Lag0000409 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000409
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr4: 6334911 .. 6335462 (+)
RNA-Seq ExpressionLag0000409
SyntenyLag0000409
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGGAGTTTGTCCAGAATACTCCAGATCCTGGATAAACCCGACCCTAGCACCAAACTCCATGAGGGGGACTTGATTAGAGACCCGAGGAAGGGGAAGAATCCAGTCGAATATGTGAATGAATCAAAGACAGAATCCAAAGGAAAGAAGACCAACAGCGCAACCAGCAAGGTCAGAGGGCTAAAGCACACAGAGCGCACAGTACTGAGGAGCCCTGAATCAAGTACCAGCCGTAGAACAGACCTGAGAAATCTGATCGAGGAAAAGTGCAGAGTGGCCAAAACTGCCGAGTCTGAGGCCAGAGCTGCCGAGGCCGAGGCTAAGAAAGACCATTTCCCTTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCTCAGGGAGACCTGCCTAAGTTGAAGGATTCGGGAGGCCAAGACATCGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGATGCCACAGAAGTTCAAGGTACCTACATTCAGGCCGTATGATGGCAAGAAAGACCCTGTCTAG

mRNA sequence

ATGAATCGGAGTTTGTCCAGAATACTCCAGATCCTGGATAAACCCGACCCTAGCACCAAACTCCATGAGGGGGACTTGATTAGAGACCCGAGGAAGGGGAAGAATCCAGTCGAATATGTGAATGAATCAAAGACAGAATCCAAAGGAAAGAAGACCAACAGCGCAACCAGCAAGGTCAGAGGGCTAAAGCACACAGAGCGCACAGTACTGAGGAGCCCTGAATCAAGTACCAGCCGTAGAACAGACCTGAGAAATCTGATCGAGGAAAAGTGCAGAGTGGCCAAAACTGCCGAGTCTGAGGCCAGAGCTGCCGAGGCCGAGGCTAAGAAAGACCATTTCCCTTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCTCAGGGAGACCTGCCTAAGTTGAAGGATTCGGGAGGCCAAGACATCGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGATGCCACAGAAGTTCAAGGTACCTACATTCAGGCCGTATGATGGCAAGAAAGACCCTGTCTAG

Coding sequence (CDS)

ATGAATCGGAGTTTGTCCAGAATACTCCAGATCCTGGATAAACCCGACCCTAGCACCAAACTCCATGAGGGGGACTTGATTAGAGACCCGAGGAAGGGGAAGAATCCAGTCGAATATGTGAATGAATCAAAGACAGAATCCAAAGGAAAGAAGACCAACAGCGCAACCAGCAAGGTCAGAGGGCTAAAGCACACAGAGCGCACAGTACTGAGGAGCCCTGAATCAAGTACCAGCCGTAGAACAGACCTGAGAAATCTGATCGAGGAAAAGTGCAGAGTGGCCAAAACTGCCGAGTCTGAGGCCAGAGCTGCCGAGGCCGAGGCTAAGAAAGACCATTTCCCTTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCTCAGGGAGACCTGCCTAAGTTGAAGGATTCGGGAGGCCAAGACATCGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGATGCCACAGAAGTTCAAGGTACCTACATTCAGGCCGTATGATGGCAAGAAAGACCCTGTCTAG

Protein sequence

MNRSLSRILQILDKPDPSTKLHEGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVRGLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAAEAEAKKDHFPWKTELLNTLKELGNPQGDLPKLKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV
Homology
BLAST of Lag0000409 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 7.3e-07
Identity = 59/168 (35.12%), Postives = 80/168 (47.62%), Query Frame = 0

Query: 23  EGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVR-GLKHTERTVLRSPESSTSRRT 82
           E  L+RDP+KGK P     ES TE   + TNS  SK+R G    +RT +  P        
Sbjct: 71  EVPLVRDPKKGKGP----TESDTE---ESTNSVGSKLRIGGNTRQRTRIFDPR------- 130

Query: 83  DLRNLIEEKCRVAKTAESEARAAEAEAKKDHFPWKTELLNTLKELGNPQGDLPKLKD--- 142
                        KT +     A    K DH    +E ++  K  G P  D P+  +   
Sbjct: 131 -------------KTKKQHKSPAPNGGKSDHDDRNSEPISLDK--GKP-ADRPESSEKRH 190

Query: 143 ---SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV 184
                G D+EEL+DQ D PFTEE+M+ ++P KFK+PT + +D   DPV
Sbjct: 191 SHKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPV 208

BLAST of Lag0000409 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 5.2e-05
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 108 AKKDHFPWKTE--LLNTLKELGNPQGDLPK-LKDSGGQDIEELIDQVDPPFTEEVMKAEM 167
           +K DH    +E   LN  K +  P+    +  +   G D+EEL+ Q D PFTEE+M+ ++
Sbjct: 35  SKNDHDNRNSEPISLNKGKPIDRPESSEKRHNQKEKGFDLEELLGQADSPFTEEIMREKV 94

Query: 168 PQKFKVPTFRPYDGKKDPV 184
           P KFK+PT +P+DG  +PV
Sbjct: 95  PPKFKLPTVKPFDGMTEPV 113

BLAST of Lag0000409 vs. NCBI nr
Match: GFS31826.1 (hypothetical protein Acr_00g0019390 [Actinidia rufa])

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-05
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 131 GDLPKLKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV 184
           G +  +K+ G   +EELI++ D PFT  VM+  +P KFK+PT  P+DG KDP+
Sbjct: 196 GVIAAVKEKGTNSVEELINRTDTPFTPAVMRVSLPLKFKMPTLEPFDGTKDPL 248

BLAST of Lag0000409 vs. NCBI nr
Match: XP_022145129.1 (uncharacterized protein LOC111014646 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 58/176 (32.95%), Postives = 87/176 (49.43%), Query Frame = 0

Query: 5   LSRILQILDKPDPSTKLHEGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVRGLKH 64
           L R+ Q+L + +   +  E  L+RDPRKGK P     +S+TE   + TNSA SK+R    
Sbjct: 72  LQRMTQVLRQYE-RQESDEVPLVRDPRKGKGPA----QSETE---ESTNSAGSKLR---- 131

Query: 65  TERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAAEAEAKKDHFPWKTELLNTLK 124
                      +T RRT + +         K  +    +A    + DH    +E ++  K
Sbjct: 132 --------IGGNTRRRTQIFD-------SQKMKKQHKYSAPNGGRSDHDDRNSEPVSLDK 191

Query: 125 ELGNPQGDLPKLKD------SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFR 175
             G P  D P+  +        G D+EEL+DQ D PFTEE+M+ ++P KFK+PT +
Sbjct: 192 --GKP-ADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVK 217

BLAST of Lag0000409 vs. NCBI nr
Match: XP_030939261.1 (uncharacterized protein LOC115964085 [Quercus lobata])

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-04
Identity = 37/125 (29.60%), Postives = 65/125 (52.00%), Query Frame = 0

Query: 67  RTVLRSPESSTSRRTDLRNLIE-EKCRVAKTAE--------SEARAAEAEAKKDHFPWKT 126
           + +L + E  T +  +LR  +E +  ++ +T E        S+A   +   ++D    + 
Sbjct: 18  QALLANVEELTRQNEELRKTVESQNAKLQRTDENQNEEESNSQANKQDRTLREDSTKMEN 77

Query: 127 ELLNTLKELGNPQGDLPKLKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYD 183
           EL N  KE+   +     +KD GG++++ +I ++D PFT EV+   +P KF +P    YD
Sbjct: 78  ELRNMRKEMDELKS---AMKDKGGENLDGVIRRMDSPFTTEVLNHPLPPKFHLPQLESYD 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158830.17.3e-0735.12uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022159109.15.2e-0540.51uncharacterized protein LOC111025548 [Momordica charantia][more]
GFS31826.16.8e-0547.17hypothetical protein Acr_00g0019390 [Actinidia rufa][more]
XP_022145129.11.2e-0432.95uncharacterized protein LOC111014646 [Momordica charantia][more]
XP_030939261.12.6e-0429.60uncharacterized protein LOC115964085 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000409.1Lag0000409.1mRNA