Lag0000398 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000398
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 6042115 .. 6043003 (-)
RNA-Seq Expression	Lag0000398
Synteny	Lag0000398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATCCAACGGGTAATGTTGCAGCATCAGGCTTTAGAAGGAGAATGTAACCACCTAGCTAATCAAGTTGTGGAGGCTGAAGGGTTGAGGCAGGAGTATGACCTTCTAACACAAGACTATGAGGATACCCAAGGTTGTTTAGCAGAGGTCGTAAGAATATTAAGGATCATGGCAACAAAGGCAGAGGTGCTTTTTGAAGAAGCTCGAGGATTAAAAGGAGGAGTCATCCCAACGCAGCCAAACAGAGAGCAACTTGGCAGGTTTCTCGAGGACTTATGTGAAGAATTAAGCTACTTAAGTCGTTTTTATTGAGTTCACATTAACCTTTTGTACTTTTGTTAAGGAGTGATCGTACTTTCAATATGTAACCCCTTTTGACAAAACAATATTTATTTATGAAGTTAATTGTTCTTATCTTGCCTTTTATTAAGTTTGGTTTGCCCTTAGTTCCTTTTTCTCATCTAGATTTTTTTTCCTCCCTTTTCCCATTTGATGACAAATCTCTCCCATCTCGAAGGATAATTAAAGCACATTATTCAAAATAGCCCGACAATCACGAGCTCGACATCCTTACTTCACAAGGGCACAATGCAAAATCATGGAAGATCAGAATAACGAATAAGTTCAAGATCTAAAGCAGGATGTTGAAATACTAAAGGAGCAAGTAACTATGCTAATTGAGTTATTGTCAACCAGCAAAGGAAAAACAGTCATCGATTCACCACCGCCTACGCGGGATCCACTAGGTTCCCAATCAAATGAGTCTTCTTTATATCCACCAGGATTCACCCCTCCAGGCCACCATGCAGAGAAGTATAATTCTTCTACGGCACACCCTTCGACAACCACCCATAATATCCCTCACTTGGAGAGATTGGGAGGCTAG

mRNA sequence

ATGACGATCCAACGGGTAATGTTGCAGCATCAGGCTTTAGAAGGAGAATGTAACCACCTAGCTAATCAAGTTGTGGAGGCTGAAGGGTTGAGGCAGGAGTATGACCTTCTAACACAAGACTATGAGGATACCCAAGGTTGTTTAGCAGAGGTCGTAAGAATATTAAGGATCATGGCAACAAAGGCAGAGGTGCTTTTTGAAGAAGCTCGAGGATTAAAAGGAGGAGTCATCCCAACGCAGCCAAACAGAGAGCAACTTGGCAGCAAAGGAAAAACAGTCATCGATTCACCACCGCCTACGCGGGATCCACTAGGTTCCCAATCAAATGAGTCTTCTTTATATCCACCAGGATTCACCCCTCCAGGCCACCATGCAGAGAAGTATAATTCTTCTACGGCACACCCTTCGACAACCACCCATAATATCCCTCACTTGGAGAGATTGGGAGGCTAG

Coding sequence (CDS)

ATGACGATCCAACGGGTAATGTTGCAGCATCAGGCTTTAGAAGGAGAATGTAACCACCTAGCTAATCAAGTTGTGGAGGCTGAAGGGTTGAGGCAGGAGTATGACCTTCTAACACAAGACTATGAGGATACCCAAGGTTGTTTAGCAGAGGTCGTAAGAATATTAAGGATCATGGCAACAAAGGCAGAGGTGCTTTTTGAAGAAGCTCGAGGATTAAAAGGAGGAGTCATCCCAACGCAGCCAAACAGAGAGCAACTTGGCAGCAAAGGAAAAACAGTCATCGATTCACCACCGCCTACGCGGGATCCACTAGGTTCCCAATCAAATGAGTCTTCTTTATATCCACCAGGATTCACCCCTCCAGGCCACCATGCAGAGAAGTATAATTCTTCTACGGCACACCCTTCGACAACCACCCATAATATCCCTCACTTGGAGAGATTGGGAGGCTAG

Protein sequence

MTIQRVMLQHQALEGECNHLANQVVEAEGLRQEYDLLTQDYEDTQGCLAEVVRILRIMATKAEVLFEEARGLKGGVIPTQPNREQLGSKGKTVIDSPPPTRDPLGSQSNESSLYPPGFTPPGHHAEKYNSSTAHPSTTTHNIPHLERLGG

Homology

The following BLAST results are available for this feature:

BLAST of Lag0000398 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0000398 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000398.1	Lag0000398.1	mRNA