Lag0000389 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000389
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description40S ribosomal protein S13
Locationchr4: 5648419 .. 5649592 (-)
RNA-Seq ExpressionLag0000389
SyntenyLag0000389
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGAATTGTAGTATCCCTGCCTTATACATTCACTTTGCCTCTCTTAGCACTACTACAAAATTGGGAATCCATGATGCCAAAAGGAAAGGAACCAAGGGGTGTCAATGTAAGGTGAAAAATCGTTTCTCCTTTTAGTTTTCTAATGAGTGTTCGGTTGATTTGTTGTGAGAACTCTCTTTTCTTGGATGATTTTTTAATGTTTGGTGGGAGCGTATATGTTCTTAAGTTTTTGCTAAGTTTAGTTTAGTTGTTATGTTCATGAATTTTTTATACTTTGGTTAATTTTTTAATACTTTAAGTCATGTTTTTAATCTTGGTAATGCCTCATTGTAATTCTTTATTAAGTTCTCTACTCTTCTTGGCTCATATAAGAAATTCAGGTACTACTTATACTAATTAGAATTAACACATGCCTCATGCAAGCATTATTTCCTCTCAAATTGGTCCTTTGTTGAGATTTAGAAATGAAAACTCACCTTTAGTTAAAGAAGGGTCTCCACAAGTAGTCCTCTTGTTAATACTGGAGTGATGCATGGAGTTGTGTACATTTCTCAATATGCATTCTGCTTTTTTCAGAACATAGGCTTAAAATTTTAGAATTTTGTTTCATTTTCCATCTTTCTAGGCCTTGGGCCTTGGGGGCTGGGGAGAGTAGGTTTAGCATGTATATCTTGTTCTTGGTAATTTGTGCAGCAAACACCAACTTTGAAACACCAACTTGATGGCTTTCCTTTGACCATTCAGGTTGCCAAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCTGTGATTCTCACGGGATTGCTTAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCATATATTGAAGGCTCATGGTGAGCCCCATCTACCCTTCCTCCACTGAACTTCTATTTTATACATCAATCAGAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTGGTCCAGGGCTAACTCCTGAAATCTCGGAGGATCTCTACCATCTCATCAAGAAAGTTGTTTCAATCAAAAAACATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCCATTGCCTGACCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAG

mRNA sequence

ATGTTGAGAATTGTAGTATCCCTGCCTTATACATTCACTTTGCCTCTCTTAGCACTACTACAAAATTGGGAATCCATGATGCCAAAAGGAAAGGAACCAAGGGGTGTCAATCAAACACCAACTTTGAAACACCAACTTGATGGCTTTCCTTTGACCATTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCATATATTGAAGGCTCATGGGCTAACTCCTGAAATCTCGGAGGATCTCTACCATCTCATCAAGAAAGTTGTTTCAATCAAAAAACATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCCATTGCCTGACCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAG

Coding sequence (CDS)

ATGTTGAGAATTGTAGTATCCCTGCCTTATACATTCACTTTGCCTCTCTTAGCACTACTACAAAATTGGGAATCCATGATGCCAAAAGGAAAGGAACCAAGGGGTGTCAATCAAACACCAACTTTGAAACACCAACTTGATGGCTTTCCTTTGACCATTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCATATATTGAAGGCTCATGGGCTAACTCCTGAAATCTCGGAGGATCTCTACCATCTCATCAAGAAAGTTGTTTCAATCAAAAAACATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCCATTGCCTGACCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAG

Protein sequence

MLRIVVSLPYTFTLPLLALLQNWESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILHILKAHGLTPEISEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
Homology
[Close]
BLAST of Lag0000389 vs. NCBI nr
Match: PPD86677.1 (hypothetical protein GOBAR_DD16380 [Gossypium barbadense])

HSP 1 Score: 147.9 bits (372), Expect = 6.2e-32
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 0 

Query: 54  QVKSVTGSKILHILKAHGLTPEISEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESR 113
           QVKSVTGSKIL ILKAHGL PEI EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESR
Sbjct: 62  QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESR 121

Query: 114 IHCLTRYYKKTKKLPPVWK 133
           IHCL RYYKKTKKLPPVWK
Sbjct: 122 IHCLARYYKKTKKLPPVWK 140

[Close]
BLAST of Lag0000389 vs. NCBI nr
Match: XP_010450246.1 (PREDICTED: 40S ribosomal protein S13-2-like [Camelina sativa])

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-31
Identity = 82/129 (63.57%), Postives = 91/129 (70.54%), Query Frame = 0 

Query: 7   SLPYTFTLPLLALLQNW---ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKI 66
           +LPY  T P    + +    ES+    K+    +Q   +     G P   QVKSVTGSKI
Sbjct: 15  ALPYKRTPPAWVKITSQDVDESICKFAKKGLTPSQIGVILRDSHGIP---QVKSVTGSKI 74

Query: 67  LHILKAHGLTPEISEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKK 126
           L ILKAHGL PEI EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKK
Sbjct: 75  LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKK 134

Query: 127 TKKLPPVWK 133
           TKKLPPVWK
Sbjct: 135 TKKLPPVWK 140

[Close]
BLAST of Lag0000389 vs. NCBI nr
Match: XP_023533955.1 (40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 4.0e-31
Identity = 82/129 (63.57%), Postives = 91/129 (70.54%), Query Frame = 0 

Query: 7   SLPYTFTLPLLALLQN---WESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKI 66
           +LPY  TLP    + +    E++    K+    +Q   +     G     QVKSVTGSKI
Sbjct: 15  ALPYKRTLPSWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGI---AQVKSVTGSKI 74

Query: 67  LHILKAHGLTPEISEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKK 126
           L ILKAHGL PEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKK
Sbjct: 75  LRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKK 134

Query: 127 TKKLPPVWK 133
           TKKLPPVWK
Sbjct: 135 TKKLPPVWK 140

[Close]
BLAST of Lag0000389 vs. NCBI nr
Match: XP_020217345.1 (40S ribosomal protein S13 [Cajanus cajan] >KYP67202.1 40S ribosomal protein S13 [Cajanus cajan])

HSP 1 Score: 144.8 bits (364), Expect = 5.2e-31
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 0 

Query: 54  QVKSVTGSKILHILKAHGLTPEISEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESR 113
           QVKSVTGSKIL ILKAHGLTPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESR
Sbjct: 62  QVKSVTGSKILRILKAHGLTPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESR 121

Query: 114 IHCLTRYYKKTKKLPPVWK 133
           IH L RYYK+TKKLPPVWK
Sbjct: 122 IHRLARYYKQTKKLPPVWK 140

[Close]
BLAST of Lag0000389 vs. NCBI nr
Match: XP_010440625.1 (PREDICTED: 40S ribosomal protein S13-2-like [Camelina sativa])

HSP 1 Score: 144.8 bits (364), Expect = 5.2e-31
Identity = 77/109 (70.64%), Postives = 83/109 (76.15%), Query Frame = 0 

Query: 24  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILHILKAHGLTPEISEDLYHL 83
           ES+    K+    +Q   +     G P   QVKSVTGSKIL ILKAHGL PEI EDLYHL
Sbjct: 35  ESICKFAKKGLTPSQIGVILRDSHGIP---QVKSVTGSKILRILKAHGLAPEIPEDLYHL 94

Query: 84  IKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK 133
           IKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Sbjct: 95  IKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Lag0000389 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-34
Identity = 77/109 (70.64%), Postives = 83/109 (76.15%), Query Frame = 0 

Query: 24  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILHILKAHGLTPEISEDLYHL 83
           ES+    K+    +Q   +     G P   QVKSVTGSKIL ILKAHGL PEI EDLYHL
Sbjct: 35  ESICKFAKKGLTPSQIGVILRDSHGIP---QVKSVTGSKILRILKAHGLAPEIPEDLYHL 94

Query: 84  IKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK 133
           IKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Sbjct: 95  IKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Lag0000389 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-34
Identity = 77/109 (70.64%), Postives = 83/109 (76.15%), Query Frame = 0 

Query: 24  ESMMPKGKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKILHILKAHGLTPEISEDLYHL 83
           ES+    K+    +Q   +     G P   QVKSVTGSKIL ILKAHGL PEI EDLYHL
Sbjct: 35  ESICKFAKKGLTPSQIGVILRDSHGIP---QVKSVTGSKILRILKAHGLAPEIPEDLYHL 94

Query: 84  IKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK 133
           IKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Sbjct: 95  IKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Lag0000389 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-33
Identity = 71/79 (89.87%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 54  QVKSVTGSKILHILKAHGLTPEISEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESR 113
           QV SVTGSKIL ILKAHGL PEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESR
Sbjct: 62  QVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESR 121

Query: 114 IHCLTRYYKKTKKLPPVWK 133
           IH L RYYKKTKKLPPVWK
Sbjct: 122 IHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Lag0000389 vs. ExPASy Swiss-Prot
Match: Q05761 (40S ribosomal protein S13 OS=Zea mays OX=4577 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.8e-33
Identity = 82/129 (63.57%), Postives = 91/129 (70.54%), Query Frame = 0 

Query: 7   SLPYTFTLP--LLALLQNWESMMPK-GKEPRGVNQTPTLKHQLDGFPLTIQVKSVTGSKI 66
           +LPY  T P  L     + E M+ K  K+ +  +Q   L     G PL   VKSVTGSKI
Sbjct: 15  ALPYKRTPPTWLKTAASDVEEMITKAAKKGQMPSQIGVLLRDQHGIPL---VKSVTGSKI 74

Query: 67  LHILKAHGLTPEISEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKK 126
           L ILKAHGL PEI EDLY LIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYK+
Sbjct: 75  LRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKR 134

Query: 127 TKKLPPVWK 133
           TKKLPP WK
Sbjct: 135 TKKLPPTWK 140

[Close]
BLAST of Lag0000389 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.9e-33
Identity = 71/79 (89.87%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 54  QVKSVTGSKILHILKAHGLTPEISEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESR 113
           QVKSVTGSKIL ILKAHGL PEI EDLYHLIKK VSI+KHLER RKDKDSKFRLILVESR
Sbjct: 62  QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESR 121

Query: 114 IHCLTRYYKKTKKLPPVWK 133
           IH L RYYKKTKKLPPVWK
Sbjct: 122 IHRLARYYKKTKKLPPVWK 140

The following BLAST results are available for this feature:
BLAST of Lag0000389 vs. NCBI nr
Match NameE-valueIdentityDescription
PPD86677.16.2e-3291.14hypothetical protein GOBAR_DD16380 [Gossypium barbadense][more]
XP_010450246.12.3e-3163.57PREDICTED: 40S ribosomal protein S13-2-like [Camelina sativa][more]
XP_023533955.14.0e-3163.5740S ribosomal protein S13-like [Cucurbita pepo subsp. pepo][more]
XP_020217345.15.2e-3191.1440S ribosomal protein S13 [Cajanus cajan] >KYP67202.1 40S ribosomal protein S13 ... [more]
XP_010440625.15.2e-3170.64PREDICTED: 40S ribosomal protein S13-2-like [Camelina sativa][more]
BLAST of Lag0000389 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P592236.8e-3470.6440S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P592246.8e-3470.6440S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P623023.4e-3389.8740S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
Q057615.8e-3363.5740S ribosomal protein S13 OS=Zea mays OX=4577 GN=RPS13 PE=2 SV=1[more]
P462989.9e-3389.8740S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 62..132
e-value: 7.5E-6
score: 25.1
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 67..126
e-value: 2.6E-12
score: 46.8
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 90..120
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 62..132
e-value: 3.00305E-21
score: 79.0842
NoneNo IPR availableGENE3D1.10.287.10coord: 75..132
e-value: 1.4E-30
score: 107.4
NoneNo IPR availableGENE3D4.10.860.130coord: 52..74
e-value: 1.8E-6
score: 29.5
NoneNo IPR availablePANTHERPTHR11885:SF2240S RIBOSOMAL PROTEIN S13coord: 53..132
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 53..132
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 58..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000389.1Lag0000389.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome