Lag0000366 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000366
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr4: 5141821 .. 5142135 (+)
RNA-Seq ExpressionLag0000366
SyntenyLag0000366
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCGCCAAAGGTGCAAGGCAAAATGGTTTGTTGAGGGTGATGCCAATACAGCCTTTTTCCACCTTATAGTGGCTGCAAATAGAAGAAAAGGCTCCATTGTGGAGATTTTATCCGGCTTAGGTAACAGCCTCACAAATGATAATGACATAGAAAAAGAATTTATAGCCTTTTACCAAAAGCTCTACACTAAAAAAGACAGCAGAAATCCATTGTCGATTATTGATGAACGGAATCCTATATCTACGGACCAGAGAGCAACTTTAGAATCTCCCTTCACAAAGCTGAAATTTACAAGGCAGAATAGGATTTAG

mRNA sequence

ATGTGGCGCCAAAGGTGCAAGGCAAAATGGTTTGTTGAGGGTGATGCCAATACAGCCTTTTTCCACCTTATAGTGGCTGCAAATAGAAGAAAAGGCTCCATTGTGGAGATTTTATCCGGCTTAGGTAACAGCCTCACAAATGATAATGACATAGAAAAAGAATTTATAGCCTTTTACCAAAAGCTCTACACTAAAAAAGACAGCAGAAATCCATTGTCGATTATTGATGAACGGAATCCTATATCTACGGACCAGAGAGCAACTTTAGAATCTCCCTTCACAAAGCTGAAATTTACAAGGCAGAATAGGATTTAG

Coding sequence (CDS)

ATGTGGCGCCAAAGGTGCAAGGCAAAATGGTTTGTTGAGGGTGATGCCAATACAGCCTTTTTCCACCTTATAGTGGCTGCAAATAGAAGAAAAGGCTCCATTGTGGAGATTTTATCCGGCTTAGGTAACAGCCTCACAAATGATAATGACATAGAAAAAGAATTTATAGCCTTTTACCAAAAGCTCTACACTAAAAAAGACAGCAGAAATCCATTGTCGATTATTGATGAACGGAATCCTATATCTACGGACCAGAGAGCAACTTTAGAATCTCCCTTCACAAAGCTGAAATTTACAAGGCAGAATAGGATTTAG

Protein sequence

MWRQRCKAKWFVEGDANTAFFHLIVAANRRKGSIVEILSGLGNSLTNDNDIEKEFIAFYQKLYTKKDSRNPLSIIDERNPISTDQRATLESPFTKLKFTRQNRI
Homology
[Close]
BLAST of Lag0000366 vs. NCBI nr
Match: KAG7028494.1 (LINE-1 retrotransposable element ORF2 protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-13
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 7  KAKWFVEGDANTAFFHLIVAANRRKGSIVEILSGLGNSLTNDNDIEKEFIAFYQKLYTKK 66
          K+KW  EGDANTAF HL+V     +G+IVEILS    +L N N IE+E I FY+KL+TKK
Sbjct: 11 KSKWLPEGDANTAFSHLVVQL-IDEGTIVEILSA---NLVNGNGIERELIGFYRKLFTKK 70

Query: 67 DSRNPLSIIDER--NPISTDQRATLESPFTKLK 98
          D R   +++D R  +PI+ +QR  LE+PFT+++
Sbjct: 71 DGRR--TVLDNRDISPITAEQRDFLETPFTEVE 97

[Close]
BLAST of Lag0000366 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-09
Identity = 34/57 (59.65%), Postives = 37/57 (64.91%), Query Frame = 0 

Query: 2   WRQRCKAKWFVEGDANTAFFHLIVAANRRKGSIVEILSGLGNSLTNDNDIEKEFIAF 59
           WRQRCK KW  EGD NT FFH  +A  RR+  I EILS  G  LT   DIE+EFI F
Sbjct: 342 WRQRCKQKWLCEGDENTKFFHRFLANKRRRSIITEILSKKGIGLTQIKDIEEEFIDF 398

[Close]
BLAST of Lag0000366 vs. NCBI nr
Match: XP_035546536.1 (uncharacterized protein LOC118348603 [Juglans regia])

HSP 1 Score: 71.2 bits (173), Expect = 5.8e-09
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0 

Query: 2   WRQRCKAKWFVEGDANTAFFHLIVAANRRKGSIVEILSGLGNSLTNDNDIEKEFIAFYQK 61
           WRQR K +W  EGD NT FFH   +  R+K  I ++ S LG  LTN NDI  EF + ++ 
Sbjct: 187 WRQRAKQRWLKEGDRNTKFFHKCASVRRQKNLIHKLQSELGQVLTNPNDIGGEFQSVFRD 246

Query: 62  LYTKKDSRNPLSIIDERNP 81
           L+T  +   P S+++   P
Sbjct: 247 LFTSSNPTAPNSLLENFRP 265

[Close]
BLAST of Lag0000366 vs. NCBI nr
Match: XP_019242559.1 (PREDICTED: uncharacterized protein LOC109222690, partial [Nicotiana attenuata])

HSP 1 Score: 70.5 bits (171), Expect = 9.8e-09
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 0 

Query: 2   WRQRCKAKWFVEGDANTAFFHLIVAANRRKGSIVEILSGLGNSLTNDNDIEKEFIAFYQK 61
           WRQR +A W  EGD NT FFH    A+RR  +I +++   G SL    DI++E I +Y+K
Sbjct: 254 WRQRSRALWLKEGDKNTKFFHRTANAHRRYNNIDQLVVE-GESLQAPEDIKREVIRYYKK 313

Query: 62  LYTKKDSRNPLSIIDERNPISTDQRATLESPF 94
           LYT+++   P         I+ +    L+SPF
Sbjct: 314 LYTEEEEWRPTGPNSIHQMITEEDNLMLQSPF 344

[Close]
BLAST of Lag0000366 vs. NCBI nr
Match: KAG9458388.1 (hypothetical protein H6P81_002896 [Aristolochia fimbriata])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 0 

Query: 2   WRQRCKAKWFVEGDANTAFFHLIVAANRRKGSIVEILSGLGNSLTNDNDIEKEFIAFYQK 61
           W+QR + KW  EGD NT FFH + +A+RRK  I   L+  G  +TN + I   F  F+  
Sbjct: 326 WKQRARYKWVKEGDGNTKFFHAVASAHRRKSRITS-LTANGVEVTNKDAIISGFTTFFTG 385

Query: 62  LYTKKDSRNPLSIIDERNPISTDQRATLESPFT 95
           LYT++D   P+ +      +S   R  L  PFT
Sbjct: 386 LYTEEDFERPVPVGLPIKKLSDASRLALVRPFT 417

The following BLAST results are available for this feature:
BLAST of Lag0000366 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028494.12.3e-1351.61LINE-1 retrotransposable element ORF2 protein, partial [Cucurbita argyrosperma s... [more]
XP_022158956.12.6e-0959.65uncharacterized protein LOC111025405 [Momordica charantia][more]
XP_035546536.15.8e-0941.77uncharacterized protein LOC118348603 [Juglans regia][more]
XP_019242559.19.8e-0939.13PREDICTED: uncharacterized protein LOC109222690, partial [Nicotiana attenuata][more]
KAG9458388.11.3e-0838.71hypothetical protein H6P81_002896 [Aristolochia fimbriata][more]
BLAST of Lag0000366 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000366.1Lag0000366.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
molecular_function GO:0003824 catalytic activity