Lag0000335 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000335
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPol protein
Locationchr4: 4415857 .. 4416168 (+)
RNA-Seq ExpressionLag0000335
SyntenyLag0000335
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGTCTGGTAGCTTATCGTCTAGCGTTGCCTCCTTCTCTTTCGGCGGTACACAATGTTTTCCATGTCTCCATGCTACGAAGGTATTTGGAAAATCCAGCCCATAGAGTGGACTTCGAACCTTTGCAACTGAGCGAGAACTTGTCATATGAGGAGAAGCCTATGCTAATTCTTGATAGAGAGGTGAAGGTCCTTCGTAATCGCGAGATAGCTCTCGTAAAGGTCCTTTGGCAAAACCATCTGTCTGAAGAAGCAACATGGGAGAGAGAAGACAAAATGATGACCAAGTTTCCAGAGTTTTTCAAGTACTAG

mRNA sequence

ATTGGTCTGGTAGCTTATCGTCTAGCGTTGCCTCCTTCTCTTTCGGCGGTACACAATGTTTTCCATGTCTCCATGCTACGAAGGTATTTGGAAAATCCAGCCCATAGAGTGGACTTCGAACCTTTGCAACTGAGCGAGAACTTGTCATATGAGGAGAAGCCTATGCTAATTCTTGATAGAGAGGTGAAGGTCCTTCGTAATCGCGAGATAGCTCTCGTAAAGGTCCTTTGGCAAAACCATCTGTCTGAAGAAGCAACATGGGAGAGAGAAGACAAAATGATGACCAAGTTTCCAGAGTTTTTCAAGTACTAG

Coding sequence (CDS)

ATTGGTCTGGTAGCTTATCGTCTAGCGTTGCCTCCTTCTCTTTCGGCGGTACACAATGTTTTCCATGTCTCCATGCTACGAAGGTATTTGGAAAATCCAGCCCATAGAGTGGACTTCGAACCTTTGCAACTGAGCGAGAACTTGTCATATGAGGAGAAGCCTATGCTAATTCTTGATAGAGAGGTGAAGGTCCTTCGTAATCGCGAGATAGCTCTCGTAAAGGTCCTTTGGCAAAACCATCTGTCTGAAGAAGCAACATGGGAGAGAGAAGACAAAATGATGACCAAGTTTCCAGAGTTTTTCAAGTACTAG

Protein sequence

IGLVAYRLALPPSLSAVHNVFHVSMLRRYLENPAHRVDFEPLQLSENLSYEEKPMLILDREVKVLRNREIALVKVLWQNHLSEEATWEREDKMMTKFPEFFKY
Homology
BLAST of Lag0000335 vs. NCBI nr
Match: XP_038896625.1 (uncharacterized protein LOC120084887 [Benincasa hispida])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 1   IGLVAYRLALPPSLSAVHNVFHVSMLRRYLENPAHRVDFEPLQLSENLSYEEKPMLILDR 60
           IG VAYRLALPPSLSAVHNVFHVSMLR+YL +P H VDFEPLQL++NLSYEEKP+ ++ R
Sbjct: 27  IGSVAYRLALPPSLSAVHNVFHVSMLRKYLTDPLHMVDFEPLQLNKNLSYEEKPVQVVAR 86

Query: 61  EVKVLRNREIALVKVLWQNHLSEEATWEREDKMMTKFPEFFK 103
           EVKVLR++E+ALVKVLWQNH  EEATWERED+M     E F+
Sbjct: 87  EVKVLRSKEVALVKVLWQNHQFEEATWEREDEMRALHSELFQ 128

BLAST of Lag0000335 vs. NCBI nr
Match: KAA0042023.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 5.1e-34
Identity = 74/102 (72.55%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 1    IGLVAYRLALPPSLSAVHNVFHVSMLRRYLENPAHRVDFEPLQLSENLSYEEKPMLILDR 60
            IG VAYRLALPPSLSAVH+VFHVSMLR Y+ +P+H VD+EPL++ ENLSY E+P+ +L R
Sbjct: 1082 IGPVAYRLALPPSLSAVHDVFHVSMLRNYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAR 1141

Query: 61   EVKVLRNREIALVKVLWQNHLSEEATWEREDKMMTKFPEFFK 103
            EVK+LRNREI LVKVLWQNH  EEATWERED M  ++PEFF+
Sbjct: 1142 EVKMLRNREIPLVKVLWQNHRVEEATWEREDDMRARYPEFFE 1183

BLAST of Lag0000335 vs. NCBI nr
Match: KAA0025917.1 (pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo var. makuwa] >KAA0048622.1 pol protein [Cucumis melo var. makuwa] >KAA0056306.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 5.1e-34
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 1    IGLVAYRLALPPSLSAVHNVFHVSMLRRYLENPAHRVDFEPLQLSENLSYEEKPMLILDR 60
            IG VAYRLALPPSLSAVH+VFHVSMLRRY+ +P H VDFEPLQ+SENLSYEE+P+ IL R
Sbjct: 1435 IGPVAYRLALPPSLSAVHDVFHVSMLRRYVADPTHIVDFEPLQVSENLSYEEQPVEILAR 1494

Query: 61   EVKVLRNREIALVKVLWQNHLSEEATWEREDKMMTKFPEFFK 103
            E+K LR+R+I LVKVLWQNH  EEATWERE+ M T++PE F+
Sbjct: 1495 EIKKLRSRDIPLVKVLWQNHGVEEATWEREEDMKTQYPELFE 1536

BLAST of Lag0000335 vs. NCBI nr
Match: KAA0031854.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 5.1e-34
Identity = 72/102 (70.59%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 1   IGLVAYRLALPPSLSAVHNVFHVSMLRRYLENPAHRVDFEPLQLSENLSYEEKPMLILDR 60
           IG VAYRLALPPSLSAVHNVFHVSMLR+Y+ +P+H VD+EPL++ ENLSY E+P+ +L R
Sbjct: 60  IGSVAYRLALPPSLSAVHNVFHVSMLRKYVSDPSHAVDYEPLEIDENLSYTEQPIEVLAR 119

Query: 61  EVKVLRNREIALVKVLWQNHLSEEATWEREDKMMTKFPEFFK 103
           EVK+LRNREI LVK+LW+NH  EEATWERED M  ++PE F+
Sbjct: 120 EVKMLRNREIPLVKILWRNHRIEEATWEREDDMRARYPELFE 161

BLAST of Lag0000335 vs. NCBI nr
Match: TYK09567.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 6.7e-34
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 1   IGLVAYRLALPPSLSAVHNVFHVSMLRRYLENPAHRVDFEPLQLSENLSYEEKPMLILDR 60
           IG VAYRLA+PPS SAVH+VFHVSMLRRY+ +P H VDFEPLQ+SENLSYEE+P  IL R
Sbjct: 35  IGSVAYRLAVPPSFSAVHDVFHVSMLRRYVADPMHVVDFEPLQISENLSYEEQPAEILAR 94

Query: 61  EVKVLRNREIALVKVLWQNHLSEEATWEREDKMMTKFPEFFK 103
           EVK LRNREI+LVKVLW+NH  EEATWERE+ M T++PE F+
Sbjct: 95  EVKKLRNREISLVKVLWRNHGVEEATWEREEDMRTQYPELFE 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038896625.12.3e-3474.51uncharacterized protein LOC120084887 [Benincasa hispida][more]
KAA0042023.15.1e-3472.55pol protein [Cucumis melo var. makuwa][more]
KAA0025917.15.1e-3474.51pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo v... [more]
KAA0031854.15.1e-3470.59pol protein [Cucumis melo var. makuwa][more]
TYK09567.16.7e-3474.51pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46148:SF33OS05G0296332 PROTEINcoord: 5..101
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 5..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000335.1Lag0000335.1mRNA