IVF0027038 (gene) Melon (IVF77) v1

Overview


Name	IVF0027038
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag protease polyprotein
Location	chr03: 13959094 .. 13959321 (-)
RNA-Seq Expression	IVF0027038
Synteny	IVF0027038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTTTGCCGTCGGCTGCCCGGCGAACGACGCGGCGGATGGCGGCTGGACGCGGTCAGACGAAGGACGCACGGTGGCGTCCGGTTACGTGAGACCGACAGGGAGGTCGGGAAAGATGGAACCGCGGCGGACGAAGTTGAAGTTGAAGAAGTTGTCGACGATGGAGACGGAAATGGAGACGGAACGCGACGGAGGAGATGGGGACGGAGGCGAAGGCGTGTGTGA

mRNA sequence

ATGAAGGTTTGCCGTCGGCTGCCCGGCGAACGACGCGGCGGATGGCGGCTGGACGCGGTCAGACGAAGGACGCACGGTGGCGTCCGGTTACGTGAGACCGACAGGGAGGTCGGGAAAGATGGAACCGCGGCGGACGAAGTTGAAGTTGAAGAAGTTGTCGACGATGGAGACGGAAATGGAGACGGAACGCGACGGAGGAGATGGGGACGGAGGCGAAGGCGTGTGTGA

Coding sequence (CDS)

ATGAAGGTTTGCCGTCGGCTGCCCGGCGAACGACGCGGCGGATGGCGGCTGGACGCGGTCAGACGAAGGACGCACGGTGGCGTCCGGTTACGTGAGACCGACAGGGAGGTCGGGAAAGATGGAACCGCGGCGGACGAAGTTGAAGTTGAAGAAGTTGTCGACGATGGAGACGGAAATGGAGACGGAACGCGACGGAGGAGATGGGGACGGAGGCGAAGGCGTGTGTGA

Protein sequence

MKVCRRLPGERRGGWRLDAVRRRTHGGVRLRETDREVGKDGTAADEVEVEEVVDDGDGNGDGTRRRRWGRRRRRV

Homology

[Close]

BLAST of IVF0027038 vs. ExPASy TrEMBL
Match: A0A5A7SVL2 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1276G00440 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 12  RGGW-RLDAVRRRTHGGVRLRETDREVGKDGT-AADEVEVEEVVDDGDGNGDGTRRRRWG 71
           +GGW   DAV +RTH GVRLRET+R +   G+     VEVEE  D  DGNGDGTR+RRWG
Sbjct: 484 KGGWTSADAVGQRTHDGVRLRETERRLETGGSRGGRNVEVEEASDYRDGNGDGTRQRRWG 543

Query: 72  RRRRR 75
           RRRRR
Sbjct: 544 RRRRR 548

[Close]

BLAST of IVF0027038 vs. NCBI nr
Match: KAA0033195.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 6.80e-11
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 12  RGGWR-LDAVRRRTHGGVRLRETDREVGKDGTAADE-VEVEEVVDDGDGNGDGTRRRRWG 71
           +GGW   DAV +RTH GVRLRET+R +   G+     VEVEE  D  DGNGDGTR+RRWG
Sbjct: 484 KGGWTSADAVGQRTHDGVRLRETERRLETGGSRGGRNVEVEEASDYRDGNGDGTRQRRWG 543

Query: 72  RRRRR 74
           RRRRR
Sbjct: 544 RRRRR 548

The following BLAST results are available for this feature:

BLAST of IVF0027038 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0027038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVL2	1.0e-08	63.08	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of IVF0027038 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033195.1	6.80e-11	63.08	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0027038 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0027038.1	IVF0027038.1	mRNA