IVF0026916 (gene) Melon (IVF77) v1

Overview
NameIVF0026916
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L20
Locationchr11: 22932816 .. 22937368 (-)
RNA-Seq ExpressionIVF0026916
SyntenyIVF0026916
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCACATCCAACGAGTCAAATTCTATCAATTACCCTCTCAAAATCGATAGAATGGTAACCTTTAACCATTTCTTTCTTCCTTTTATTAAAAAGGGTTGAGAAAAAAAGAAATGAAAACATAAACTCCTTTTTAGCATTCCAAATAGAAAAATGGAAATCCCTAATTCCTTCTTGTTTCCCTTGCTCTCACGTGCTCCCCCTTCTTCTTCTTCTTCTTCTACTTCTTCATTTCACGCCGTCTCCCGTTCCCTTTCTACAGCTCAGCCGCGCCGCCGCTTCTCTTCCGTTCAGTTCTACCGCCGCCTTTCCTTCGCCTAAACCTCTATTCTAGCAGGTTTGCGGTGATTTTTTACTCTTTCGTTTACTACTATTCTCCCATTTCCTATCTTTATCTTTCTTCTCACTTGAGAAACTCAAATTACAACTTTTCAAACTGTCGTGTTATAGCATCTTCCTTTTGCTTTATTGCATATATCTTTTAATCGAGGAGTTCATCATCTGCTTATCTCTCTGGTCTCTGCTGAAAACTGTCTCATCTCCTCGACAATTAAACGTCCCACCATTTTCCTTCTTCTTTACTTATCTACAATCAGGCAAAGTAATCTATGGTATCATTGAATTCTCTTTTAATCCTAGCTCATAGGAGTTATTTTGATTGATTGAACAACACCTCAGCCATATTTGTAATTGTAGATTATAGTTGTAAAGTAGACAATGAATCGTTTTTTGATAATCGAAATGCTCTCTTTCAAATCAACAGACTACCGAAATTTTGCCACCAGTGGTAATTTGAATCTATTGGAAGTAAGAGCCGCGGTACACTCTCTGCTCCATGTACTTGATTTAAAAAGTTGTAGAAAATGCTTAGGGTAAAATAATCCTATTTTAAAAGGACGAGGGCATAAAGGAGACCTAAAATCTCTCCGCTTATAGCCAGTTATATATATAGTATATAGTATAGAACATAGATTGTATTTTTCTATGCCTTTTATTCCTCGTAAATGAAAGTGCAGTGTTCAATCGAACAAAAACTTCTCTTGGCATCAAAACTCAACCAAATATCTGAAAGATCGGAAGTTGTGCTGTTGAGTATTTTTGGTTTTTGACTTTATAGTTGTAATGATGTTTTGATTGGATCATCAAATATTCATCTATGATTATCAATTAATAATTATGATGATTCTGTAGTTTTAGATCATAGCAAAGAAGAAAGATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAACGGGACATGCGCTCTCTTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGGTATGGCTATTTTCTTTGAATGTTCCTTATTAGACTACCATAACTATTTATGTGACCACAATGCATCATTGTGTCCATAGAATTACTTTTTGTTTTGAATTTCTTAATTTGGTTTAGTTCGTCCTTTCTTTTCTTGTTTTATTTTGTTTTCCTGTAAAAGGTACTAACACTGAGACGGGAAAAAAAAGAAAACAAATAGGATCAGGGATGGGGAGTGGGATTTCAACTATTTCCCATCTTTGTTCATAATTTTGATTATAGTGAATAAGATAGAATGTTTAGGAACTTCTTGTGGGGAGGGGTCAATGAGGGTAAGGGAAAAGATTCATTTCATTAAGTGGGAGTTGGTGGTGAAGCTAGTGGAATTGGAGGATTAAAAATGGGATCTTGACATGACGAAGTGCTGCTAGGTAAGTGTTTGTGATTGCTCTTTATGGAGCATTGTACAAAGTTATAGTGAGCAAAAATGGGCCACAACCTTCTAAGGTGGGTGGCAAGAATCGATTCTCAGGGACCTAGTAAAAACGTTTTGAAATCTAGTGCACATGGATTCCCTTTTTTCTCTCGATGTATTAGATGCTTTGTTGGGAAAGATTTGAAAGTTACTTTTGGAAAAAAGGGGAGCCTAAGGTTACGTAATGGGGTGCTACTTGCTAATGAGGTGCTACTTGCTAGATGGTTGTGGTTATTCTTCATGGAGCATAGTACAAAGTTATTGTGCCAAAGATGGCCCACACCCTTCTAAGGTGTGTGGAAAGCATTCATTCTAACTTTTAAGGGACTTGGTAAGAACCTCTGAAAATCTGCTGCTCATGGATTCCCTTTCCTCTCGGTGTATTAGATACTTTGTTTGGGAAGATGGAAGTTTACTTTTGAGAAGATTGTTGAGTTTGTGACAATCCTTTTGAGAGTTGTTTCCTCATTTATATCACCTGTCTCAAAAAAGCATCATTCTCTTTTTGATGCCTTGTCATTTCCTTGGGATTCAATCCTCCTCTCTCTTTCTGATACAGAGGTTGTTGATGTGGTGGCGGTTCTTTGATTTTTCCCTTCTACAAGATCAACACAAATGTTTTTAGGAGAGAATTCTAGGTTGTGGTCTCTTGATCCTTCAAAAGGTTTATCCTGTAAATCCCATTTTCACGTTCTATTTGTCTCTTCGCTACCCTGGATTGCATAAGTTTTCGCTGCTATTTGGTTGAGTTAAATACCAAAGTAGGCTATTTTTTTTGGGCAAGTTTTACTTGGTAGGATGAACACTCTAGATTGCGATACATGTCATTCTTCCTTTGTATTGCATTTGCAATGGCCCATCATTTGCATGCAAAGGAGGACCTTCACCTCCGTTTGTGGGGTGTTGATCTAGAATAGGTGGTTGAGCTTGTTTGGCTTACAATTGGCGTGGATGAGAGATTGGTTCTCCATTATTGAGGGTGTGGTCTTTTTTACCTTTTTCGTGAGAGAGGCCAAGTATTGTACTATTGTGGCATGTTATTTTTTGTTGTTATTTGGGTTATCTGGATTAAAACCAATATCATGGCTTTTAGAAAGGTGGAAAGATCAAATGAGGAAGTGATATGAAAACCTTAGAAATTTGAAAAATTACGAACCACCCTTTGTTTATTTGAACCCCTAATAACAAATTCTAAAACCCCCCAAATCGATTCAATCCAACTACAAGGAGAGTTAAAAAAGGTTACCTTGTGATCGAAGACCATGAGGTAAGGAGAATTACTCCCTTACTCAAGGTTTGAACACTCCATGGGCAAGTTGATCAATCTTACCTGAATGCTCAAACATGCGACTCTAGATCAAGAATTTAAAAAAGGATGGTGATAAATCTCCGTTATTAGCACCAAGGAAAATATCATTCCCAAATCTGCAATCCCAAATCCAAAAATTGTTCTGTACATTAGAACTTAATGGTTAGGCTCTATAGCCTCCCAAACCCTAATGTGTGCCACATCATGAACCCAGGTAAAATGGCAAAAGATACCCTGATTTAATATGTTACAGAAAATAAGAAAATTACTTAAAAATTTTTAAATAAGTATAATTAATTATTTGATGTCCGGATGGTTCGTATCAGAAAGTAGGAGGTTACTTTTAATGTCTCCTTGTGGATATTGTTTAATAGGCTTTTTTGTACTTGTTACGTTGGTTTGATTTTTCTTTCTCTCACTTTTTTGGTTCTTTCTAATATTTCTTTTCCTTTTTGCTTGTCTTTGTATTTTGTTTTATTTATTTATTTTGAAATGAAGTTCAGTTTCCTACCCCCAAAAGAACTTAGATCATTTTTAGCTTCTGATCTTTTGATATCCTCACATCAATTTTTTAATTTTCACTTTTGATATTCTCACATCCTTTAATTTTAGCTTTCATTTCTTCTACAATTCATCTCTATAATTTTATGCCAACTTGACCTGCCTAGATAAGCTGCATACGTTTCACATGATTCATGAATGTTAGCACTTTTAGCTTGAATGGTTTGGTTTTGGGATGGGAGGAGTAAAACCTGTTTTAGGTCAAATAATTACTGTATGATTGTGTTCTATTATTGGTGTAGGATTCTCATGTTCTACATCAGTGTGAAGTGCGAACTGCCTCTTATTTCCAATCAACATTGAATTCTTTACCAAGTCACTAAAATATTTACATCTATATATTTGGGCAATTTGCCGTGTAGAGAGATACTAATGTTTCTTTTGTCTCCTTCCCTAACATTTTAGGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAATGGACCGTTTAAGAGTCCTCTGGACCTCCAGTTATATAGATACCGACTCGGGGTGTTGTCTGGCTTATGATCATCTAGAGTTGATGCTTGTTTTTAGCGTAGTTATTTTTGTTACTGTTATTGTATTAATTCTCGTAATCTTGTCAGACACCGAAATGCTTCTCCATTTGAAATGATAAAAGTTTTCTTGGATGTTTTTTGGGTTTTGGATCCACAACCAAGGATGATATTTTG

mRNA sequence

ACCACATCCAACGAGTCAAATTCTATCAATTACCCTCTCAAAATCGATAGAATGGTAACCTTTAACCATTTCTTTCTTCCTTTTATTAAAAAGGGTTGAGAAAAAAAGAAATGAAAACATAAACTCCTTTTTAGCATTCCAAATAGAAAAATGGAAATCCCTAATTCCTTCTTGTTTCCCTTGCTCTCACGTGCTCCCCCTTCTTCTTCTTCTTCTTCTACTTCTTCATTTCACGCCGTCTCCCGTTCCCTTTCTACAGCTCAGCCGCGCCGCCGCTTCTCTTCCGTTCAGTTCTACCGCCGCCTTTCCTTCGCCTAAACCTCTATTCTAGCAGGTTTGCGGTGATTTTTTACTCTTTCGTTTACTACTATTCTCCCATTTCCTATCTTTATCTTTCTTCTCACTTGAGAAACTCAAATTACAACTTTTCAAACTGTCGTGTTATAGCATCTTCCTTTTGCTTTATTGCATATATCTTTTAATCGAGGAGTTCATCATCTGCTTATCTCTCTGGTCTCTGCTGAAAACTGTCTCATCTCCTCGACAATTAAACGTCCCACCATTTTCCTTCTTCTTTACTTATCTACAATCAGGCAAAGTAATCTATGTTTTAGATCATAGCAAAGAAGAAAGATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAACGGGACATGCGCTCTCTTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAATGGACCGTTTAAGAGTCCTCTGGACCTCCAGTTATATAGATACCGACTCGGGGTGTTGTCTGGCTTATGATCATCTAGAGTTGATGCTTGTTTTTAGCGTAGTTATTTTTGTTACTGTTATTGTATTAATTCTCGTAATCTTGTCAGACACCGAAATGCTTCTCCATTTGAAATGATAAAAGTTTTCTTGGATGTTTTTTGGGTTTTGGATCCACAACCAAGGATGATATTTTG

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAACGGGACATGCGCTCTCTTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAGAAAGATGCTGCTTCCATGA

Protein sequence

MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRKMLLP
Homology
[Close]
BLAST of IVF0026916 vs. ExPASy Swiss-Prot
Match: B6IPJ8 (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplT PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 7.7e-32
Identity = 64/101 (63.37%), Postives = 82/101 (81.19%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ 
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y  FMHGL +  ++++RKVLS+++  EP SFKALV+ ++ A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]
BLAST of IVF0026916 vs. ExPASy Swiss-Prot
Match: Q3YSX0 (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-29
Identity = 61/101 (60.40%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]
BLAST of IVF0026916 vs. ExPASy Swiss-Prot
Match: Q2GHR2 (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) OX=205920 GN=rplT PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-28
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y +F+HGL   NV LNRKVL++++++    FK +VD+ + A
Sbjct: 76  YSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEA 116

[Close]
BLAST of IVF0026916 vs. ExPASy Swiss-Prot
Match: Q11KK1 (50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplT PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-28
Identity = 60/107 (56.07%), Postives = 83/107 (77.57%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ 
Sbjct: 16  KVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRNFRALWIQRINAATREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKN 112
           YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ +    KN
Sbjct: 76  YGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKN 122

[Close]
BLAST of IVF0026916 vs. ExPASy Swiss-Prot
Match: Q5FH69 (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rplT PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-28
Identity = 57/101 (56.44%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y +F++GL   N+ LNRK+L+++++H   +FK +VD+++ A
Sbjct: 76  YSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116

[Close]
BLAST of IVF0026916 vs. ExPASy TrEMBL
Match: A0A6J1JCG1 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.1e-60
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRK 119
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPP+K
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKK 118

[Close]
BLAST of IVF0026916 vs. ExPASy TrEMBL
Match: A0A1S4E159 (50S ribosomal protein L20 OS=Cucumis melo OX=3656 GN=LOC103496283 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.1e-60
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRK 119
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPP+K
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKK 118

[Close]
BLAST of IVF0026916 vs. ExPASy TrEMBL
Match: A0A6J1FUI3 (50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.1e-60
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRK 119
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPP+K
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKK 118

[Close]
BLAST of IVF0026916 vs. ExPASy TrEMBL
Match: A0A0A0KD68 (50S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-59
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRK 119
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPP+K
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKK 118

[Close]
BLAST of IVF0026916 vs. ExPASy TrEMBL
Match: A0A444YEA4 (50S ribosomal protein L20 OS=Arachis hypogaea OX=3818 GN=Ahy_A07g031593 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59
Identity = 115/121 (95.04%), Postives = 119/121 (98.35%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRKML 120
           HGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFKALVDIS+NAFPGNKNVV PPRK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISKNAFPGNKNVVIPPRKVA 120

Query: 121 L 122
           +
Sbjct: 121 I 121

[Close]
BLAST of IVF0026916 vs. NCBI nr
Match: XP_008456292.1 (PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456294.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456295.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901960.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901961.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo])

HSP 1 Score: 236 bits (603), Expect = 2.58e-78
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRK 118
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPP+K
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKK 118

[Close]
BLAST of IVF0026916 vs. NCBI nr
Match: XP_022985864.1 (uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985866.1 uncharacterized protein LOC111483787 [Cucurbita maxima])

HSP 1 Score: 236 bits (603), Expect = 2.58e-78
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRK 118
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPP+K
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKK 118

[Close]
BLAST of IVF0026916 vs. NCBI nr
Match: XP_022943497.1 (uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943499.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >KAG6570598.1 hypothetical protein SDJN03_29513, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010448.1 rplT [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (603), Expect = 2.58e-78
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRK 118
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPP+K
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKK 118

[Close]
BLAST of IVF0026916 vs. NCBI nr
Match: XP_004139908.1 (uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744109.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744110.1 uncharacterized protein LOC101216644 [Cucumis sativus] >KGN46794.1 hypothetical protein Csa_020818 [Cucumis sativus])

HSP 1 Score: 236 bits (601), Expect = 5.21e-78
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRK 118
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPP+K
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKK 118

[Close]
BLAST of IVF0026916 vs. NCBI nr
Match: XP_023007267.1 (uncharacterized protein LOC111499805 [Cucurbita maxima] >XP_023532681.1 uncharacterized protein LOC111794775 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235 bits (599), Expect = 1.05e-77
Identity = 115/118 (97.46%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRK 118
           HGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVDISRNAFPGNKNVVFPP+K
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKK 118

[Close]
BLAST of IVF0026916 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-55
Identity = 103/119 (86.55%), Postives = 112/119 (94.12%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R 
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPRKM 120
           HGVNYGNF+HGLMKEN+QLNRKVLSELSMHEPYSFKALVD+SR +FPGNKNVV   RK+
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKV 119

[Close]
BLAST of IVF0026916 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0 

Query: 3   KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG 62
           + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G
Sbjct: 14  RTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVIHEMG 73

Query: 63  V--NYGNFMHGLMKENVQLNRKVLSELSM 90
           V  +Y  F+H L K+ + LNRK+L+++++
Sbjct: 74  VFYSYNEFIHNLYKKQLLLNRKILAQIAL 102

The following BLAST results are available for this feature:
BLAST of IVF0026916 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B6IPJ87.7e-3263.3750S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX... [more]
Q3YSX02.1e-2960.4050S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=... [more]
Q2GHR21.0e-2860.4050S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arka... [more]
Q11KK11.8e-2856.0750S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplT P... [more]
Q5FH692.3e-2856.4450S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=... [more]
BLAST of IVF0026916 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JCG19.1e-6099.1550S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1[more]
A0A1S4E1599.1e-6099.1550S ribosomal protein L20 OS=Cucumis melo OX=3656 GN=LOC103496283 PE=3 SV=1[more]
A0A6J1FUI39.1e-6099.1550S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=... [more]
A0A0A0KD681.5e-5998.3150S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1[more]
A0A444YEA42.6e-5995.0450S ribosomal protein L20 OS=Arachis hypogaea OX=3818 GN=Ahy_A07g031593 PE=3 SV=... [more]
BLAST of IVF0026916 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456292.12.58e-7899.15PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456294.1 PREDICTED: 5... [more]
XP_022985864.12.58e-7899.15uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharac... [more]
XP_022943497.12.58e-7899.15uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 unchar... [more]
XP_004139908.15.21e-7898.31uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharact... [more]
XP_023007267.11.05e-7797.46uncharacterized protein LOC111499805 [Cucurbita maxima] >XP_023532681.1 uncharac... [more]
BLAST of IVF0026916 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G16740.11.3e-5586.55Ribosomal protein L20 [more]
ATCG00660.11.1e-0938.20ribosomal protein L20 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 64..90
score: 38.27
coord: 31..60
score: 58.08
coord: 1..30
score: 33.03
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 3..102
e-value: 9.6E-39
score: 130.2
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..98
e-value: 1.9E-41
score: 140.5
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..112
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 43..59
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 1..104
score: 22.226503
IPR005813Ribosomal protein L20CDDcd07026Ribosomal_L20coord: 5..100
e-value: 1.33664E-49
score: 151.483
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20Ribosomal protein L20coord: 45..106
e-value: 1.7E-26
score: 93.5
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 2..105
NoneNo IPR availableGENE3D6.10.160.10coord: 1..44
e-value: 3.5E-20
score: 73.9
NoneNo IPR availablePANTHERPTHR10986:SF2450S RIBOSOMAL PROTEIN L20coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026916.8IVF0026916.8mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome