IVF0026666 (gene) Melon (IVF77) v1

Overview


Name	IVF0026666
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr09: 8963372 .. 8965059 (+)
RNA-Seq Expression	IVF0026666
Synteny	IVF0026666

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTGTATTTATGAAAATGATTTCATATATTGTATGTCCGAAAAGGTTTTCAAAACTATCACTCATTAAGCTTTGACTTATGGTTTATGTTTTTCCTTCCCAAGTGACAAGGTGTTAAGGCCAAGTTAAGAAGGGTTTGACGAATTGCTACGTGTTGAGATGCTAGCTAGATGATCTAAGTTTAAGCTCAAAAAGTTGAGCTAGACGTTGAAGGCCTAAAGTTCATTTTAAGTCTTGTTGTAAAGAGAAATCATGTATACTGTATCTTGGAACACATATTATTAAGTTAATAAAAGAGTTGTTGTTTGTTATTATTTTGTTGTGTCATGTTATTCTTATTGCTTAGTAACTAAAGGAGTTAAGTTGAACTAAGCGATAAAGCCAAGTTTTAAGAACTTAAGTTGAGCGTTCTAGCGTTTCATCTTGAGACATCAGGACTGCTCAAGTCGCGTCGTAGTGCAATGTGAGGTTAGAACGCGTGCGGAAAAGGATGTGACACACATCACTTATTGGACATCTTTAATGAATAAAATCCAACAAACTATTTATATAAAATATTGAAAAAGTGAATACATGATAAAGAGGAGTGGGAAAGATATTTGAAAATAATATTTGAGAATATAGAATCTGTGGACATTCATGTCTAATTCAAATAGTTTAAAACAATAATTACTACTTGTTCTTATTACATGGGAGTTTCAGAAAAGAAAAATTGAACTTTTTCTTATTACATTTGAATTTTTTCTTTAAACAATTAAAAGTCTTATTTTAAAGACAAAATTTGAAATAGAAAAGAAGAATTTGTAAAGAAGAAAAACCTAAACCCTATCGTCCGTCCTTCCTTCCTTTTCCCCCCAATCCCACTTCTTCAGATTTCTTACCGCAGTCGCACGCCAACGCCCCTCACCGGCGAACTCTCTCCCTTTCCCTCTCCGCCGCAGCCGCTCCCCGGCACCCTTCCACTGTCCTAACGGTCTGTTTTCCTTCTCCTCTCCCTATATATATATATATATATATATATCTCTGCTACAACCGTACGCCGGCGCGCCACCCCCTTCTTCTGCCGCAGGCGCTTGACTGCCACTAACTTCTTTTGCAGCTGCCCCTCGCTGTTTTCCACTCCAATCTTCCCTTGCTCCCTCCATCTCTCAGTCGCTCGCCGTTGAGTTTTTTTTTCGGTTTAGCCAACACCGGGTAAGTTCCGTATTAGGTCAATTTTAATTTTAAATCCTGACATTGAAAGTCAAGCATACTTATGGAATATCTTTATGATTCAAGATATCTTTAAAGTTCCTTTTATGGATTCCAGAATGCTGTTGTATCGTTTTGGATTCTTTACTGGGAGATTGAGTCGGACTGTTCCCTTAGTTGATTTTCGTACATGCATTTACTCGTCGTTTCTTAGAGATATGTACACATAGACATAACCCATCATGGGTTGGCCTAGTGATAAACAGGAGCATGACCTTTGGTTGAAATACATTTATAAAAAATGCATTGATATATACACGCACTAGATATACCCTTCTTTTTTTATGTTTTGCATATCTTGCCAACAATTTTGGGTTTTATAAAACAAGTGTAATTATACTTGAGTCCATTCTTGATAAAACTTCATTACCTTTGTTTATATGTGTTCATGTATATATGTTTTAGTCTCAGGTGTTGCATAAATTCTTTTGA

mRNA sequence

ATGAAAGCTTGGGAAAGATATTTGAAAATAATATTTGAGAATATAGAATCTGTGGACATTCATAAAAGAAGAATTTGTAAAGAAGAAAAACCTAAACCCTATCGTCCGTCCTTCCTTCCTTTTCCCCCCAATCCCACTTCTTCAGATTTCTTACCGCAGTCGCACGCCAACGCCCCTCACCGGCGAACTCTCTCCCTTTCCCTCTCCGCCGCAGCCGCTCCCCGGCACCCTTCCACTGTCCTAACGCTGCCCCTCGCTGTTTTCCACTCCAATCTTCCCTTGCTCCCTCCATCTCTCAGTCGCTCGCCGTTGAGTTTTTTTTTCGGTTTAGTGTTGCATAAATTCTTTTGA

Coding sequence (CDS)

ATGAAAGCTTGGGAAAGATATTTGAAAATAATATTTGAGAATATAGAATCTGTGGACATTCATAAAAGAAGAATTTGTAAAGAAGAAAAACCTAAACCCTATCGTCCGTCCTTCCTTCCTTTTCCCCCCAATCCCACTTCTTCAGATTTCTTACCGCAGTCGCACGCCAACGCCCCTCACCGGCGAACTCTCTCCCTTTCCCTCTCCGCCGCAGCCGCTCCCCGGCACCCTTCCACTGTCCTAACGCTGCCCCTCGCTGTTTTCCACTCCAATCTTCCCTTGCTCCCTCCATCTCTCAGTCGCTCGCCGTTGAGTTTTTTTTTCGGTTTAGTGTTGCATAAATTCTTTTGA

Protein sequence

MKAWERYLKIIFENIESVDIHKRRICKEEKPKPYRPSFLPFPPNPTSSDFLPQSHANAPHRRTLSLSLSAAAAPRHPSTVLTLPLAVFHSNLPLLPPSLSRSPLSFFFGLVLHKFF

Homology

[Close]

BLAST of IVF0026666 vs. ExPASy TrEMBL
Match: A0A0A0KTX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G471100 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 72/115 (62.61%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 9   KIIFENIESVDIHKRRICKEE---KPKPYRPSFLP-FPPNPTSSDFLPQSHANAPHRRTL 68
           ++I ++ E++ IH   + ++E   K K   P   P F PNPTSSDFLPQSHANAPHRR L
Sbjct: 16  ELIVDHHENLSIHSLALERKEEFAKKKNLNPIVRPSFFPNPTSSDFLPQSHANAPHRRAL 75

Query: 69  SLSLSAAAAPRHPSTVLTLPLAVFHSNLPLLPPSLSRSPLSFF-FG--LVLHKFF 117
           S+SLSAAA  +HPST+LTLPLAV HSNL LLPPSL+RSPL FF F    VLHKFF
Sbjct: 76  SISLSAAATRQHPSTILTLPLAVVHSNLHLLPPSLTRSPLRFFRFSQLRVLHKFF 130

[Close]

BLAST of IVF0026666 vs. NCBI nr
Match: KGN51171.1 (hypothetical protein Csa_009295 [Cucumis sativus])

HSP 1 Score: 119 bits (298), Expect = 6.75e-32
Identity = 73/118 (61.86%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 9   KIIFENIESVDIH------KRRICKEEKPKPY-RPSFLPFPPNPTSSDFLPQSHANAPHR 68
           ++I ++ E++ IH      K    K++   P  RPSF P   NPTSSDFLPQSHANAPHR
Sbjct: 16  ELIVDHHENLSIHSLALERKEEFAKKKNLNPIVRPSFFP---NPTSSDFLPQSHANAPHR 75

Query: 69  RTLSLSLSAAAAPRHPSTVLTLPLAVFHSNLPLLPPSLSRSPLSFF-FGL--VLHKFF 116
           R LS+SLSAAA  +HPST+LTLPLAV HSNL LLPPSL+RSPL FF F    VLHKFF
Sbjct: 76  RALSISLSAAATRQHPSTILTLPLAVVHSNLHLLPPSLTRSPLRFFRFSQLRVLHKFF 130

The following BLAST results are available for this feature:

BLAST of IVF0026666 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026666 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTX1	2.9e-23	62.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G471100 PE=4 SV=1	[more]

BLAST of IVF0026666 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51171.1	6.75e-32	61.86	hypothetical protein Csa_009295 [Cucumis sativus]	[more]

BLAST of IVF0026666 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026666.1	IVF0026666.1	mRNA