IVF0026652 (gene) Melon (IVF77) v1

Overview


Name	IVF0026652
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Clavata3/esr-related 43, putative
Location	chr10: 1438225 .. 1438969 (+)
RNA-Seq Expression	IVF0026652
Synteny	IVF0026652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACTCTCTTTCTCTCTTCTCTCTGAGTCCCATTATAGCCGTCTTTTCCTTTGCTCTTATATCTCTAACCTAAGCCTCAAATCCATTTCAACACACTAACAATTTCTTTCCTCTCTATTTTTTCCAAACTCAATTTACTATGACATTCATACATGCCGACCACCCACATACACCACGGATTTGAGTGTTCTTGAAATATTTCAAGTTTCAAATTCTTTTTTTATTTTTTTTATTTTTATTGTGGGTTTTTCTTCCGGCCGCCGGCAAGCCACCATGTTCAACAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCTATACTAATTTTGATCCTCTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCGCCGCCGTCCCCACCGCATACGACGGATAAATCACTCCCTGGTGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAACCTTCGATCGTCACCATCACCGCCATGATGAAGGATTTGAAGACAGCAAACGGAAAATCCCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTATTCAATTTTACACTCTTTCCCGTCCAAAATACCCCCGTTTTTCTCTTCAATTTTTTCTTCTTTTCTCTTTGTTAAACACGCGTTTGTCTATGATTCAATAGAGAAAACCGGG

mRNA sequence

CGACTCTCTTTCTCTCTTCTCTCTGAGTCCCATTATAGCCGTCTTTTCCTTTGCTCTTATATCTCTAACCTAAGCCTCAAATCCATTTCAACACACTAACAATTTCTTTCCTCTCTATTTTTTCCAAACTCAATTTACTATGACATTCATACATGCCGACCACCCACATACACCACGGATTTGAGTGTTCTTGAAATATTTCAAGTTTCAAATTCTTTTTTTATTTTTTTTATTTTTATTGTGGGTTTTTCTTCCGGCCGCCGGCAAGCCACCATGTTCAACAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCTATACTAATTTTGATCCTCTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCGCCGCCGTCCCCACCGCATACGACGGATAAATCACTCCCTGGTGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAACCTTCGATCGTCACCATCACCGCCATGATGAAGGATTTGAAGACAGCAAACGGAAAATCCCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTATTCAATTTTACACTCTTTCCCGTCCAAAATACCCCCGTTTTTCTCTTCAATTTTTTCTTCTTTTCTCTTTGTTAAACACGCGTTTGTCTATGATTCAATAGAGAAAACCGGG

Coding sequence (CDS)

ATGTTCAACAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCTATACTAATTTTGATCCTCTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCGCCGCCGTCCCCACCGCATACGACGGATAAATCACTCCCTGGTGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAACCTTCGATCGTCACCATCACCGCCATGATGAAGGATTTGAAGACAGCAAACGGAAAATCCCCAGTTGTCCAGATCCTCTTCATAATTAG

Protein sequence

MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPHTTDKSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN

Homology

[Close]

BLAST of IVF0026652 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.4e-46
Identity = 101/115 (87.83%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60
           MFNRRI T    SSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPP  PPH
Sbjct: 1   MFNRRITT----SSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPP--PPH 60

Query: 61  TTDKSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
             DKSL GEEKDNAKN+LLQKYFNGR FDR  HRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  PADKSLSGEEKDNAKNDLLQKYFNGRAFDR--HRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of IVF0026652 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 67/113 (59.29%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60
           M  RRIA  SSS+SS      FAILILILWVSQIWVCCHCQARASRI PPP         
Sbjct: 1   MCTRRIAAVSSSASS------FAILILILWVSQIWVCCHCQARASRILPPP--------- 60

Query: 61  TTDKSLPGEEKDNA--KNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPD 112
                L G+ K +A  KNEL+QKY  GR  DRH     EGFEDSKR++PSC D
Sbjct: 61  -----LTGDAKHDASGKNELVQKYLRGRASDRH-----EGFEDSKRRVPSCSD 88

[Close]

BLAST of IVF0026652 vs. ExPASy TrEMBL
Match: A0A2N9G6I6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 24  ILILILWVSQIWVCCH--CQARASRIFPPPPPPPPSPPHTTDKSLPGEEKDNAKNELLQK 83
           +++LI+ V QIW+CC   CQARA RIFP           + DK +       +K EL  K
Sbjct: 6   VVLLIMSVFQIWLCCEYSCQARAIRIFPGNGVAKFIKEKSIDKKI-------SKEELFHK 65

Query: 84  YFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           YF+GRTF  ++   D GF++SKR++PSCPDPLHN
Sbjct: 66  YFSGRTFSLNNKTDDNGFDESKRRVPSCPDPLHN 92

[Close]

BLAST of IVF0026652 vs. ExPASy TrEMBL
Match: A0A6A1W705 (CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G018956 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.6e-11
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 24  ILILILWVSQIWVCCH--CQARASRIFPPPPPPPPSPPHTTDKSLPGEEKDNAKNELLQK 83
           +++LI+ V QIWVCC   CQA A RI      P       T +   G      K ELL+K
Sbjct: 6   VVLLIIPVLQIWVCCEYSCQAGAIRIH-----PGNGEAKVTKEGSRGSLDKKNKEELLRK 65

Query: 84  YFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           YFNGRTF    +R   GFE+SKR++PSCPDPLHN
Sbjct: 66  YFNGRTFG--FNRTANGFEESKRRVPSCPDPLHN 92

[Close]

BLAST of IVF0026652 vs. ExPASy TrEMBL
Match: A0A061E6F8 (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.6e-11
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 14  SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPHTTDKSLPGEEKDN 73
           SS     +  +++LI++  QIWVCC C+A A RI      P       T+    G + + 
Sbjct: 7   SSRKLLYSSVVVLLIIFFLQIWVCCDCRAGAIRIL-----PGNGMRKMTESQ--GMKDNK 66

Query: 74  AKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
            K +L QKYFNGR+F    ++ D GFE+SKR++PSCPDPLHN
Sbjct: 67  GKGDLFQKYFNGRSFS--FNKTDRGFEESKRRVPSCPDPLHN 99

[Close]

BLAST of IVF0026652 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 192 bits (489), Expect = 2.63e-61
Identity = 101/115 (87.83%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60
           MFNRRI TSSSSSS    TSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPP  PH
Sbjct: 1   MFNRRITTSSSSSS----TSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPP--PH 60

Query: 61  TTDKSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 115
             DKSL GEEKDNAKN+LLQKYFNGR FDRH  RHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  PADKSLSGEEKDNAKNDLLQKYFNGRAFDRH--RHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of IVF0026652 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142 bits (357), Expect = 3.06e-41
Identity = 79/119 (66.39%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60
           M  RRIATSSSSS        FA+LI ILWVSQIWVC HCQARASRIFPPPPP      H
Sbjct: 1   MCTRRIATSSSSS--------FALLIFILWVSQIWVCSHCQARASRIFPPPPP------H 60

Query: 61  TTDKSLPGEEK----DNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 115
           T D +L G++K     NA+ ELL+KYF G+ FDRH  R DEGFEDSKR+IPSCPDPLHN
Sbjct: 61  TADTTLTGDQKYNANANAERELLRKYFKGKAFDRH--RRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of IVF0026652 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142 bits (357), Expect = 4.28e-41
Identity = 79/119 (66.39%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60
           M  RRIATSSSSS        FA+LI ILWVSQIWVC HCQARASRIFPPPPP      H
Sbjct: 12  MCTRRIATSSSSS--------FALLIFILWVSQIWVCSHCQARASRIFPPPPP------H 71

Query: 61  TTDKSLPGEEK----DNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 115
           T D +L G++K     NA+ ELL+KYF G+ FDRH  R DEGFEDSKR+IPSCPDPLHN
Sbjct: 72  TADTTLTGDQKYNANANAERELLRKYFKGKAFDRH--RRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of IVF0026652 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131 bits (329), Expect = 5.14e-37
Identity = 79/116 (68.10%), Postives = 82/116 (70.69%), Query Frame = 0


Query: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWV-CCHCQARASRIFPPPPPPPPSPP 60
           M  RRIA SSS          FAILILILWVSQIWV CC  QARASRIFPPPPPPPP PP
Sbjct: 1   MCTRRIAASSS----------FAILILILWVSQIWVFCCFSQARASRIFPPPPPPPP-PP 60

Query: 61  HTTDKSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 115
           HTTDK+    +  N + ELLQKYF  R F    HRH EGF DSKRKIPSCPDPLHN
Sbjct: 61  HTTDKT----DHANRRYELLQKYFKDRAF-LDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of IVF0026652 vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 109 bits (272), Expect = 3.00e-26
Identity = 67/113 (59.29%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60
           M  RRIA  SSS+SS      FAILILILWVSQIWVCCHCQARASRI PPP         
Sbjct: 1   MCTRRIAAVSSSASS------FAILILILWVSQIWVCCHCQARASRILPPP--------- 60

Query: 61  TTDKSLPGEEKDNA--KNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPD 111
                L G+ K +A  KNEL+QKY  GR  DRH     EGFEDSKR++PSC D
Sbjct: 61  -----LTGDAKHDASGKNELVQKYLRGRASDRH-----EGFEDSKRRVPSCSD 88

[Close]

BLAST of IVF0026652 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 31/100 (31.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 16  SSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPHTTDKSLPGEEKDNAK 75
           SS T+   ++IL+ ++  ++ C + +  A RIFP  P               G+ ++   
Sbjct: 9   SSLTTTLLMVILLSYMLHLF-CVYSRVGAIRIFPETP-------------ASGKRQE--- 68

Query: 76  NELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
            +L++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 69  EDLMKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of IVF0026652 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66	5.4e-46	87.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A6J1DAV9	1.0e-20	59.29	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2N9G6I6	1.1e-11	46.81	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1	[more]
A0A6A1W705	9.6e-11	48.94	CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G01...	[more]
A0A061E6F8	9.6e-11	43.14	Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ...	[more]

BLAST of IVF0026652 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52083.1	2.63e-61	87.83	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG7032076.1	3.06e-41	66.39	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601288.1	4.28e-41	66.39	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6573960.1	5.14e-37	68.10	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022150497.1	3.00e-26	59.29	uncharacterized protein LOC111018633 [Momordica charantia]	[more]

BLAST of IVF0026652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25905.1	3.0e-04	31.00	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..115
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 13..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026652.2	IVF0026652.2	mRNA