IVF0026513 (gene) Melon (IVF77) v1

Overview


Name	IVF0026513
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr01: 17085800 .. 17086144 (-)
RNA-Seq Expression	IVF0026513
Synteny	IVF0026513

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCCCACTCAAATCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAATACCGTGATGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTAGTGCCTGGGCCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAACTACTGAATGCAGGGTTTATCAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAAAGAAGAAAGATGGGAGTTTACGACTGTGCATTGATTATCGCGCCCTAA

mRNA sequence

ATGGCCATCCCACTCAAATCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAATACCGTGATGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTAGTGCCTGGGCCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAACTACTGAATGCAGGGTTTATCAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAAAGAAGAAAGATGGGAGTTTACGACTGTGCATTGATTATCGCGCCCTAA

Coding sequence (CDS)

ATGGCCATCCCACTCAAATCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAATACCGTGATGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTAGTGCCTGGGCCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAACTACTGAATGCAGGGTTTATCAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAAAGAAGAAAGATGGGAGTTTACGACTGTGCATTGATTATCGCGCCCTAA

Protein sequence

MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMGVYDCALIIAP

Homology

[Close]

BLAST of IVF0026513 vs. ExPASy TrEMBL
Match: A0A5A7SZ91 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001280 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.0e-50
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN
Sbjct: 578 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 637

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMG 105
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ++K G
Sbjct: 638 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDG 681

[Close]

BLAST of IVF0026513 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMG 105
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR+K G
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDG 714

[Close]

BLAST of IVF0026513 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMG 105
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR+K G
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDG 714

[Close]

BLAST of IVF0026513 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMG 105
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR+K G
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDG 714

[Close]

BLAST of IVF0026513 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMG 105
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR+K G
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDG 714

[Close]

BLAST of IVF0026513 vs. NCBI nr
Match: KAA0050675.1 (uncharacterized protein E6C27_scaffold673G001580 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (512), Expect = 4.06e-62
Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPP KN
Sbjct: 131 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPTKN 190

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMG 104
           AYRMAPPELAELRKQLDELLNAGFI+PAKAPYGAPVLFQR+K G
Sbjct: 191 AYRMAPPELAELRKQLDELLNAGFIKPAKAPYGAPVLFQRKKDG 234

[Close]

BLAST of IVF0026513 vs. NCBI nr
Match: KAA0041960.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK17895.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 2.98e-60
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPL SSENSGETVPKEIMRVLEKY DVMPDSLPKSLPPRRMIDHEIELVPG KPPAKN
Sbjct: 1   MAIPLNSSENSGETVPKEIMRVLEKYHDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMG 104
           AYRMAPPELAELRKQLDELLNA FIRPAKAPYGAPVLFQ++K G
Sbjct: 61  AYRMAPPELAELRKQLDELLNAEFIRPAKAPYGAPVLFQKKKDG 104

[Close]

BLAST of IVF0026513 vs. NCBI nr
Match: TYK11032.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 1.29e-59
Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPL SSENSGET+PKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELV G KPPAKN
Sbjct: 102 MAIPLNSSENSGETIPKEIMCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGEKPPAKN 161

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRK 102
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ++K
Sbjct: 162 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKK 203

[Close]

BLAST of IVF0026513 vs. NCBI nr
Match: TYK28653.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (499), Expect = 1.79e-59
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPL SSENSGETV KEI+RVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKN
Sbjct: 67  MAIPLNSSENSGETVSKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 126

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMG 104
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ++K G
Sbjct: 127 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDG 170

[Close]

BLAST of IVF0026513 vs. NCBI nr
Match: KAA0036604.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (524), Expect = 6.58e-59
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 60
           MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN
Sbjct: 578 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKN 637

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMG 104
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ++K G
Sbjct: 638 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDG 681

The following BLAST results are available for this feature:

BLAST of IVF0026513 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026513 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZ91	8.0e-50	97.12	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001280 P...	[more]
A0A5D3C4R1	3.0e-49	97.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	3.0e-49	97.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	3.0e-49	97.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7T0E2	3.0e-49	97.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]

BLAST of IVF0026513 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050675.1	4.06e-62	95.19	uncharacterized protein E6C27_scaffold673G001580 [Cucumis melo var. makuwa]	[more]
KAA0041960.1	2.98e-60	93.27	reverse transcriptase [Cucumis melo var. makuwa] >TYK17895.1 reverse transcripta...	[more]
TYK11032.1	1.29e-59	93.14	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
TYK28653.1	1.79e-59	93.27	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0036604.1	6.58e-59	97.12	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026513 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 32..111 e-value: 1.4E-15 score: 59.4
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 25..107
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 25..107
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 22..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026513.1	IVF0026513.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity