Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTGGCAGAGAAGATCATCGTCTCAAATATATTACAACCGAGAAGATCGTCGTCTCAAATACGTTGCAGCCAAAAAGGTCATCGTCTCATATATGTTGCAGCCGAGGATGTCGTCGTCTCAAATATATTATCGTCGAGAAGGTCGTCCCCTAAAATATGTTGCAGCTCAGAAGATTGTCGTTCTTAAATATGTTGAAGCAGAAAAGATAATCGTCTCAAATATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCTGTCGAGAAGGTCGTTCCTTCAATTATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCTGAGAAGATCATCGCCTCAAATATGTTACAACTGAGAAGATTGTCGTCTCAAATATGTTGCAGCTAA
mRNA sequence
ATGTTGTGGCAGAGAAGATCATCGTCTCAAATATATTACAACCGAGAAGATCGTCGTCTCAAATACGTTGCAGCCAAAAAGGTCATCGTCTCATATATGTTGCAGCCGAGGATGTCGTCGTCTCAAATATATTATCGTCGAGAAGGTCGTCCCCTAAAATATGTTGCAGCTCAGAAGATTGTCGTTCTTAAATATGTTGAAGCAGAAAAGATAATCGTCTCAAATATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCTGTCGAGAAGGTCGTTCCTTCAATTATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCTGAGAAGATCATCGCCTCAAATATGTTACAACTGAGAAGATTGTCGTCTCAAATATGTTGCAGCTAA
Coding sequence (CDS)
ATGTTGTGGCAGAGAAGATCATCGTCTCAAATATATTACAACCGAGAAGATCGTCGTCTCAAATACGTTGCAGCCAAAAAGGTCATCGTCTCATATATGTTGCAGCCGAGGATGTCGTCGTCTCAAATATATTATCGTCGAGAAGGTCGTCCCCTAAAATATGTTGCAGCTCAGAAGATTGTCGTTCTTAAATATGTTGAAGCAGAAAAGATAATCGTCTCAAATATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCAAATATGTTGCTGTCGAGAAGGTCGTTCCTTCAATTATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCTGAGAAGATCATCGCCTCAAATATGTTACAACTGAGAAGATTGTCGTCTCAAATATGTTGCAGCTAA
Protein sequence
MLWQRRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIVVLKYVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCREGRSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS
Homology
BLAST of IVF0026433 vs. ExPASy TrEMBL
Match:
A0A5A7T770 (Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G002020 PE=4 SV=1)
HSP 1 Score: 307.0 bits (785), Expect = 4.8e-80
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 5 RRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIVVLK 64
RRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIVVLK
Sbjct: 55 RRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIVVLK 114
Query: 65 YVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCREG 124
YVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCREG
Sbjct: 115 YVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCREG 174
Query: 125 RSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 165
RSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS
Sbjct: 175 RSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 214
BLAST of IVF0026433 vs. ExPASy TrEMBL
Match:
A0A5A7VHT0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00170 PE=4 SV=1)
HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 153/163 (93.87%), Postives = 154/163 (94.48%), Query Frame = 0
Query: 2 LWQRRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIV 61
L QRRSS QIYYNREDRRLKYVAAKKV+VSYMLQPRMSSSQIYYRREGRPLKYVA QKI
Sbjct: 65 LSQRRSSFQIYYNREDRRLKYVAAKKVVVSYMLQPRMSSSQIYYRREGRPLKYVATQKIA 124
Query: 62 VLKYVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCC 121
VLKYVEAEK IVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCC
Sbjct: 125 VLKYVEAEKTIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCC 184
Query: 122 REGRSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 165
REGR F YVAAEKIVVLKYVAAEKIIASNMLQ RR SSQICCS
Sbjct: 185 REGRPFKYVAAEKIVVLKYVAAEKIIASNMLQPRRSSSQICCS 227
BLAST of IVF0026433 vs. ExPASy TrEMBL
Match:
A0A5A7SNS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold999G00100 PE=4 SV=1)
HSP 1 Score: 238.0 bits (606), Expect = 2.7e-59
Identity = 130/164 (79.27%), Postives = 139/164 (84.76%), Query Frame = 0
Query: 1 MLWQRRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKI 60
ML +RSSSQ+Y +RE RL+YV +K IVSY+LQPRMSSSQI REGRPLKYVA +KI
Sbjct: 64 MLQPKRSSSQVYCSRECCRLRYVTTEKFIVSYILQPRMSSSQICCHREGRPLKYVAVEKI 123
Query: 61 VVLKYVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICC 120
VLKYV AEKIIVSNMLQPRRSSSQICCSQKDFC +YI+AEKVVVSYILQPRMSSSQIC
Sbjct: 124 DVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCHEYIIAEKVVVSYILQPRMSSSQICY 183
Query: 121 CREGRSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 165
RE R YVAAEKI VLKYVAAEKII SNMLQ RR SSQICCS
Sbjct: 184 RRECRPLKYVAAEKIFVLKYVAAEKIIVSNMLQPRRSSSQICCS 227
BLAST of IVF0026433 vs. ExPASy TrEMBL
Match:
A0A5A7SLN4 (Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00010 PE=4 SV=1)
HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 126/164 (76.83%), Postives = 139/164 (84.76%), Query Frame = 0
Query: 1 MLWQRRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKI 60
ML RRSS QI +++D LKY+ A+KV+VSY+LQPRMSSSQI YRR G PLKYVAA+KI
Sbjct: 58 MLQPRRSSFQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICYRRGGCPLKYVAAEKI 117
Query: 61 VVLKYVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICC 120
VVLKYV AEKI+VSNMLQPRRSS +ICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQIC
Sbjct: 118 VVLKYVAAEKIVVSNMLQPRRSSFEICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICY 177
Query: 121 CREGRSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 165
R GR YVAAEKIVVLKYV AEKI+ SNMLQ +R SQ+ CS
Sbjct: 178 RRGGRPLKYVAAEKIVVLKYVEAEKIVVSNMLQPKRFLSQVYCS 221
BLAST of IVF0026433 vs. ExPASy TrEMBL
Match:
A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1)
HSP 1 Score: 223.8 bits (569), Expect = 5.3e-55
Identity = 122/158 (77.22%), Postives = 132/158 (83.54%), Query Frame = 0
Query: 7 SSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIVVLKYV 66
SSSQI +++D RLKY+ A+ V+VS MLQPRMSSS+I Y RE + +KI VLKYV
Sbjct: 489 SSSQICCSQKDIRLKYIVAENVVVSDMLQPRMSSSEICYNRE-------SPEKIAVLKYV 548
Query: 67 EAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCREGRS 126
AEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICC REGR
Sbjct: 549 AAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRP 608
Query: 127 FNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 165
YVA EKI+VLKYVAAEKII SNMLQ RR SSQICCS
Sbjct: 609 LKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCS 639
BLAST of IVF0026433 vs. NCBI nr
Match:
KAA0039100.1 (zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 309 bits (791), Expect = 6.54e-105
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 5 RRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIVVLK 64
RRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIVVLK
Sbjct: 55 RRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIVVLK 114
Query: 65 YVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCREG 124
YVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCREG
Sbjct: 115 YVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCCREG 174
Query: 125 RSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 164
RSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS
Sbjct: 175 RSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 214
BLAST of IVF0026433 vs. NCBI nr
Match:
KAA0065301.1 (hypothetical protein E6C27_scaffold1023G00170 [Cucumis melo var. makuwa])
HSP 1 Score: 294 bits (752), Expect = 8.91e-99
Identity = 153/163 (93.87%), Postives = 154/163 (94.48%), Query Frame = 0
Query: 2 LWQRRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKIV 61
L QRRSS QIYYNREDRRLKYVAAKKV+VSYMLQPRMSSSQIYYRREGRPLKYVA QKI
Sbjct: 65 LSQRRSSFQIYYNREDRRLKYVAAKKVVVSYMLQPRMSSSQIYYRREGRPLKYVATQKIA 124
Query: 62 VLKYVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCC 121
VLKYVEAEK IVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCC
Sbjct: 125 VLKYVEAEKTIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCC 184
Query: 122 REGRSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 164
REGR F YVAAEKIVVLKYVAAEKIIASNMLQ RR SSQICCS
Sbjct: 185 REGRPFKYVAAEKIVVLKYVAAEKIIASNMLQPRRSSSQICCS 227
BLAST of IVF0026433 vs. NCBI nr
Match:
KAA0032450.1 (hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 239 bits (611), Expect = 1.91e-76
Identity = 130/164 (79.27%), Postives = 139/164 (84.76%), Query Frame = 0
Query: 1 MLWQRRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKI 60
ML +RSSSQ+Y +RE RL+YV +K IVSY+LQPRMSSSQI REGRPLKYVA +KI
Sbjct: 64 MLQPKRSSSQVYCSRECCRLRYVTTEKFIVSYILQPRMSSSQICCHREGRPLKYVAVEKI 123
Query: 61 VVLKYVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICC 120
VLKYV AEKIIVSNMLQPRRSSSQICCSQKDFC +YI+AEKVVVSYILQPRMSSSQIC
Sbjct: 124 DVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCHEYIIAEKVVVSYILQPRMSSSQICY 183
Query: 121 CREGRSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 164
RE R YVAAEKI VLKYVAAEKII SNMLQ RR SSQICCS
Sbjct: 184 RRECRPLKYVAAEKIFVLKYVAAEKIIVSNMLQPRRSSSQICCS 227
BLAST of IVF0026433 vs. NCBI nr
Match:
KAA0025375.1 (zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 234 bits (597), Expect = 7.89e-75
Identity = 126/164 (76.83%), Postives = 139/164 (84.76%), Query Frame = 0
Query: 1 MLWQRRSSSQIYYNREDRRLKYVAAKKVIVSYMLQPRMSSSQIYYRREGRPLKYVAAQKI 60
ML RRSS QI +++D LKY+ A+KV+VSY+LQPRMSSSQI YRR G PLKYVAA+KI
Sbjct: 58 MLQPRRSSFQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICYRRGGCPLKYVAAEKI 117
Query: 61 VVLKYVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICC 120
VVLKYV AEKI+VSNMLQPRRSS +ICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQIC
Sbjct: 118 VVLKYVAAEKIVVSNMLQPRRSSFEICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICY 177
Query: 121 CREGRSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 164
R GR YVAAEKIVVLKYV AEKI+ SNMLQ +R SQ+ CS
Sbjct: 178 RRGGRPLKYVAAEKIVVLKYVEAEKIVVSNMLQPKRFLSQVYCS 221
BLAST of IVF0026433 vs. NCBI nr
Match:
KAA0046208.1 (hypothetical protein E6C27_scaffold8039G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 223 bits (569), Expect = 2.46e-70
Identity = 130/173 (75.14%), Postives = 136/173 (78.61%), Query Frame = 0
Query: 5 RRSSSQIYYNREDRRLKYVAAKKVIV-SYMLQ---PRMSSSQIYYRREGRPLKYVAAQKI 64
R SSSQI R R LKYVAA+K++V Y+ PRMSSSQI RREG PLKYVAA+KI
Sbjct: 99 RMSSSQICCRRGGRPLKYVAAEKIVVLKYVAAEKIPRMSSSQICCRREGHPLKYVAAEKI 158
Query: 65 VVLKYVEAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAE---------KVVVSYILQP 124
VVLKYV AEKIIVSNMLQPRRSSSQICCSQKDF LKYIVAE KVVVSYILQP
Sbjct: 159 VVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFYLKYIVAENATLSRATQKVVVSYILQP 218
Query: 125 RMSSSQICCCREGRSFNYVAAEKIVVLKYVAAEKIIASNMLQLRRLSSQICCS 164
RMS SQICCCR G YVAAEKIVVLKYVAAEKI+ SNMLQ RR SSQICCS
Sbjct: 219 RMSLSQICCCRGGCLLKYVAAEKIVVLKYVAAEKIVVSNMLQPRRSSSQICCS 271
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T770 | 4.8e-80 | 100.00 | Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa ... | [more] |
| A0A5A7VHT0 | 1.2e-75 | 93.87 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7SNS6 | 2.7e-59 | 79.27 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7SLN4 | 1.1e-57 | 76.83 | Zinc finger Y-chromosomal protein 1-like isoform X1 OS=Cucumis melo var. makuwa ... | [more] |
| A0A5D3C2C8 | 5.3e-55 | 77.22 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0039100.1 | 6.54e-105 | 100.00 | zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa] | [more] |
| KAA0065301.1 | 8.91e-99 | 93.87 | hypothetical protein E6C27_scaffold1023G00170 [Cucumis melo var. makuwa] | [more] |
| KAA0032450.1 | 1.91e-76 | 79.27 | hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa] | [more] |
| KAA0025375.1 | 7.89e-75 | 76.83 | zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa] | [more] |
| KAA0046208.1 | 2.46e-70 | 75.14 | hypothetical protein E6C27_scaffold8039G00010 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
