Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCATATTTGCAACTTTTTTAAAACGTTGCTATGTACTTAATTATTTTAAATATAATTGATACATTTGCCACTATCCTTTTTTTAAAAAAAATACATTATTAAAAAATTTATTTCTTAAATTTTAAAATTTCTCAATAGTTTATACTCCAACAATAGATTGAAATATTTATGAAATCTTTTAATCATTATATTTATCATCCATTTACAATATTCTCATCTCTGTTTCCTCGAGAAATAGTGTTTTCTCGATCGATGATTACGAGAGGATGTGGACATCGGGAACAACTCCCCCAAATTGCCAAAACGTATCGGCCATTCCCGATTCCAAATCACCGGAGAACGATCCTCCGTTGTTTGTCTTACAGGAAGCCATTGAATCCGTCAACGCTTCTTCTCCAATCATCCTCACCGTCGATTTCTCCAAATCCTCCTCCTCGCCTTCCCAATTGGCTTACTTCGTTCTCTATTTTACTGAAGTGCTTAATTTCACTTCCGAGGACAATAGAACCATGAATATCTTCATCGATTCAGTGTTGATGTCCACAATCACTACTAGCATTCATAAATGTACGGTGGTTACTCTGTTTCCAGTTCATGTTAAGGCGTCGACAGCCAACGTGACGCTCGCCGCAGCAAATTCATCCGTTCCCTTCCCGCCACTGATTACTGCTATGGAGGTTTTCACCAAAGTTAACGCCACAAACGTCACTGGCGACAACATCGACATCGTCGCTGGCGACAGCACACCGTCGATGCGATTTACTTTCTTGTCCTTTGTATTGATACTTTGTGTCTCTGTTTTAGCTAACTTGACGTGA
mRNA sequence
GTCATATTTGCAACTTTTTTAAAACGTTGCTATGTACTTAATTATTTTAAATATAATTGATACATTTGCCACTATCCTTTTTTTAAAAAAAATACATTATTAAAAAATTTATTTCTTAAATTTTAAAATTTCTCAATAGTTTATACTCCAACAATAGATTGAAATATTTATGAAATCTTTTAATCATTATATTTATCATCCATTTACAATATTCTCATCTCTGTTTCCTCGAGAAATAGTGTTTTCTCGATCGATGATTACGAGAGGATGTGGACATCGGGAACAACTCCCCCAAATTGCCAAAACGTATCGGCCATTCCCGATTCCAAATCACCGGAGAACGATCCTCCGTTGTTTGTCTTACAGGAAGCCATTGAATCCGTCAACGCTTCTTCTCCAATCATCCTCACCGTCGATTTCTCCAAATCCTCCTCCTCGCCTTCCCAATTGGCTTACTTCGTTCTCTATTTTACTGAAGTGCTTAATTTCACTTCCGAGGACAATAGAACCATGAATATCTTCATCGATTCAGTGTTGATGTCCACAATCACTACTAGCATTCATAAATGTACGGTGGTTACTCTGTTTCCAGTTCATGTTAAGGCGTCGACAGCCAACGTGACGCTCGCCGCAGCAAATTCATCCGTTCCCTTCCCGCCACTGATTACTGCTATGGAGGTTTTCACCAAAGTTAACGCCACAAACGTCACTGGCGACAACATCGACATCGTCGCTGGCGACAGCACACCGTCGATGCGATTTACTTTCTTGTCCTTTGTATTGATACTTTGTGTCTCTGTTTTAGCTAACTTGACGTGA
Coding sequence (CDS)
ATGTGGACATCGGGAACAACTCCCCCAAATTGCCAAAACGTATCGGCCATTCCCGATTCCAAATCACCGGAGAACGATCCTCCGTTGTTTGTCTTACAGGAAGCCATTGAATCCGTCAACGCTTCTTCTCCAATCATCCTCACCGTCGATTTCTCCAAATCCTCCTCCTCGCCTTCCCAATTGGCTTACTTCGTTCTCTATTTTACTGAAGTGCTTAATTTCACTTCCGAGGACAATAGAACCATGAATATCTTCATCGATTCAGTGTTGATGTCCACAATCACTACTAGCATTCATAAATGTACGGTGGTTACTCTGTTTCCAGTTCATGTTAAGGCGTCGACAGCCAACGTGACGCTCGCCGCAGCAAATTCATCCGTTCCCTTCCCGCCACTGATTACTGCTATGGAGGTTTTCACCAAAGTTAACGCCACAAACGTCACTGGCGACAACATCGACATCGTCGCTGGCGACAGCACACCGTCGATGCGATTTACTTTCTTGTCCTTTGTATTGATACTTTGTGTCTCTGTTTTAGCTAACTTGACGTGA
Protein sequence
MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQLAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTLAAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLANLT
Homology
BLAST of IVF0026388 vs. ExPASy TrEMBL
Match:
A0A5A7V701 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00010 PE=4 SV=1)
HSP 1 Score: 344.0 bits (881), Expect = 3.9e-91
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query: 1 MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ 60
MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ
Sbjct: 1 MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ 60
Query: 61 LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL 120
LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL
Sbjct: 61 LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL 120
Query: 121 AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA 180
AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA
Sbjct: 121 AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA 180
Query: 181 NLT 184
NLT
Sbjct: 181 NLT 183
BLAST of IVF0026388 vs. ExPASy TrEMBL
Match:
A0A0A0KLJ1 (Malectin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G177640 PE=4 SV=1)
HSP 1 Score: 281.2 bits (718), Expect = 3.1e-72
Identity = 156/181 (86.19%), Postives = 166/181 (91.71%), Query Frame = 0
Query: 2 WTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQL 61
WTS TTPPNC NVSAIPD KSPENDPPLFVLQEAIESVNASSPIILT+DFSK SSSPSQL
Sbjct: 35 WTSVTTPPNCINVSAIPDFKSPENDPPLFVLQEAIESVNASSPIILTIDFSK-SSSPSQL 94
Query: 62 AYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTLA 121
AYFVLYFTEVLNFTSE++RT+NIFIDSVLMSTITTS+HKCTVVTLFPVHVKASTANVTLA
Sbjct: 95 AYFVLYFTEVLNFTSENSRTINIFIDSVLMSTITTSLHKCTVVTLFPVHVKASTANVTLA 154
Query: 122 AANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLAN 181
AANSSV PPLITAMEVF KVNATNVT D+I AGD SM+F+ LSFV++LCVSVLAN
Sbjct: 155 AANSSVGLPPLITAMEVFAKVNATNVTDDSI---AGDGRASMQFSLLSFVMMLCVSVLAN 211
Query: 182 L 183
L
Sbjct: 215 L 211
BLAST of IVF0026388 vs. ExPASy TrEMBL
Match:
A0A0A0KS42 (Malectin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G177650 PE=4 SV=1)
HSP 1 Score: 217.2 bits (552), Expect = 5.5e-53
Identity = 128/182 (70.33%), Postives = 143/182 (78.57%), Query Frame = 0
Query: 1 MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ 60
+WTSG TPPNC NV PD +SPENDPP VL+EAIESVN SSPIILTVDF KSSSS SQ
Sbjct: 89 IWTSGKTPPNCNNVGVTPDFESPENDPPPSVLEEAIESVNVSSPIILTVDFPKSSSS-SQ 148
Query: 61 LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL 120
AYFVLYFTEV + + NRT+NIFIDSVLMSTITT++ KCTVVTLFPV V+ STA VTL
Sbjct: 149 SAYFVLYFTEVEDLFDQKNRTINIFIDSVLMSTITTTVLKCTVVTLFPVDVRGSTAKVTL 208
Query: 121 AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA 180
AAANSS PPLI+AMEVFTKV AT VAG + PS +FTFLS +L++CVSVL
Sbjct: 209 AAANSSANLPPLISAMEVFTKVIATGG-------VAGSNGPS-QFTFLSSILMICVSVLV 261
Query: 181 NL 183
NL
Sbjct: 269 NL 261
BLAST of IVF0026388 vs. ExPASy TrEMBL
Match:
A0A5A7V3N2 (Leucine-rich repeat receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00030 PE=4 SV=1)
HSP 1 Score: 210.7 bits (535), Expect = 5.2e-51
Identity = 124/182 (68.13%), Postives = 142/182 (78.02%), Query Frame = 0
Query: 1 MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ 60
+W S TTPPNC NV+A PD +SPEN+PP VL+ AIESVN SSPIILTVDF KSSSS SQ
Sbjct: 88 IWKSATTPPNCNNVAASPDFESPENNPPPSVLENAIESVNVSSPIILTVDFPKSSSS-SQ 147
Query: 61 LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL 120
AYFVLYFTEV + ++NRT++IFIDSVLMSTITT++ CTVVTLFPV +K S ANVTL
Sbjct: 148 SAYFVLYFTEVADIFGQNNRTIDIFIDSVLMSTITTTVRNCTVVTLFPVDIKGSRANVTL 207
Query: 121 AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA 180
AAANS PPLI+AMEVFTKV AT VAG + PS +FTFLS VL++CVSVL
Sbjct: 208 AAANSPTNLPPLISAMEVFTKVIATGG-------VAGSNGPS-QFTFLSSVLMICVSVLV 260
Query: 181 NL 183
NL
Sbjct: 268 NL 260
BLAST of IVF0026388 vs. ExPASy TrEMBL
Match:
A0A6J1CDC0 (receptor-like protein kinase At5g59670 OS=Momordica charantia OX=3673 GN=LOC111010171 PE=4 SV=1)
HSP 1 Score: 195.3 bits (495), Expect = 2.3e-46
Identity = 117/181 (64.64%), Postives = 135/181 (74.59%), Query Frame = 0
Query: 2 WTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQL 61
WTSG TPPNC N+SAIPD +SPE +PP FVLQEAIES NASSPI+LTVDF K+SS SQ
Sbjct: 222 WTSGATPPNCNNISAIPDFESPEKNPPPFVLQEAIESDNASSPIVLTVDFPKTSSQ-SQS 281
Query: 62 AYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTLA 121
AYFVLYFTE +F EDNRT+NI ID +STITTS+ KCTVVTL+PV V+ S NV+L
Sbjct: 282 AYFVLYFTEAEDFLREDNRTINILIDGQNVSTITTSVSKCTVVTLYPVDVRKSMVNVSLV 341
Query: 122 AANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLAN 181
AANSS PPLI+AMEVFTKV I I + P+++FT LSFVL+L VLAN
Sbjct: 342 AANSS-GLPPLISAMEVFTKV---------IPIGGAGAGPAVQFTLLSFVLMLSGCVLAN 391
Query: 182 L 183
L
Sbjct: 402 L 391
BLAST of IVF0026388 vs. NCBI nr
Match:
KAA0062206.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])
HSP 1 Score: 345 bits (886), Expect = 1.59e-119
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query: 1 MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ 60
MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ
Sbjct: 1 MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ 60
Query: 61 LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL 120
LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL
Sbjct: 61 LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL 120
Query: 121 AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA 180
AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA
Sbjct: 121 AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA 180
Query: 181 NLT 183
NLT
Sbjct: 181 NLT 183
BLAST of IVF0026388 vs. NCBI nr
Match:
XP_011656170.1 (probable LRR receptor-like serine/threonine-protein kinase At1g51810 [Cucumis sativus])
HSP 1 Score: 283 bits (725), Expect = 6.13e-94
Identity = 156/181 (86.19%), Postives = 166/181 (91.71%), Query Frame = 0
Query: 2 WTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQL 61
WTS TTPPNC NVSAIPD KSPENDPPLFVLQEAIESVNASSPIILT+DFSKSSS PSQL
Sbjct: 77 WTSVTTPPNCINVSAIPDFKSPENDPPLFVLQEAIESVNASSPIILTIDFSKSSS-PSQL 136
Query: 62 AYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTLA 121
AYFVLYFTEVLNFTSE++RT+NIFIDSVLMSTITTS+HKCTVVTLFPVHVKASTANVTLA
Sbjct: 137 AYFVLYFTEVLNFTSENSRTINIFIDSVLMSTITTSLHKCTVVTLFPVHVKASTANVTLA 196
Query: 122 AANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLAN 181
AANSSV PPLITAMEVF KVNATNVT D+I AGD SM+F+ LSFV++LCVSVLAN
Sbjct: 197 AANSSVGLPPLITAMEVFAKVNATNVTDDSI---AGDGRASMQFSLLSFVMMLCVSVLAN 253
BLAST of IVF0026388 vs. NCBI nr
Match:
KGN49999.2 (hypothetical protein Csa_000485 [Cucumis sativus])
HSP 1 Score: 283 bits (725), Expect = 8.01e-88
Identity = 156/181 (86.19%), Postives = 166/181 (91.71%), Query Frame = 0
Query: 2 WTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQL 61
WTS TTPPNC NVSAIPD KSPENDPPLFVLQEAIESVNASSPIILT+DFSKSSS PSQL
Sbjct: 601 WTSVTTPPNCINVSAIPDFKSPENDPPLFVLQEAIESVNASSPIILTIDFSKSSS-PSQL 660
Query: 62 AYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTLA 121
AYFVLYFTEVLNFTSE++RT+NIFIDSVLMSTITTS+HKCTVVTLFPVHVKASTANVTLA
Sbjct: 661 AYFVLYFTEVLNFTSENSRTINIFIDSVLMSTITTSLHKCTVVTLFPVHVKASTANVTLA 720
Query: 122 AANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLAN 181
AANSSV PPLITAMEVF KVNATNVT D+I AGD SM+F+ LSFV++LCVSVLAN
Sbjct: 721 AANSSVGLPPLITAMEVFAKVNATNVTDDSI---AGDGRASMQFSLLSFVMMLCVSVLAN 777
BLAST of IVF0026388 vs. NCBI nr
Match:
XP_038892896.1 (uncharacterized protein At1g24485-like [Benincasa hispida])
HSP 1 Score: 235 bits (599), Expect = 6.97e-73
Identity = 135/182 (74.18%), Postives = 146/182 (80.22%), Query Frame = 0
Query: 1 MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ 60
+WT GTTPPNC NVSAI D +SPENDPP F+L+EAIESVNASSPI LTVDF KSSS PSQ
Sbjct: 232 VWTLGTTPPNCNNVSAIADFESPENDPPPFILEEAIESVNASSPITLTVDFPKSSS-PSQ 291
Query: 61 LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL 120
AYFVLYFTEV +F +E NRT++IFI+SVLMSTITTSIHKCTVVTLFPV V AST NV L
Sbjct: 292 SAYFVLYFTEVEDFLNEKNRTIDIFINSVLMSTITTSIHKCTVVTLFPVAVNASTVNVML 351
Query: 121 AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA 180
AAANSS FPPLI+AMEVFTKV AT PSM FTFLS VL+LCVSVLA
Sbjct: 352 AAANSSAGFPPLISAMEVFTKVIATG------------GGPSMHFTFLSSVLMLCVSVLA 400
Query: 181 NL 182
NL
Sbjct: 412 NL 400
BLAST of IVF0026388 vs. NCBI nr
Match:
XP_011656171.1 (leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 [Cucumis sativus])
HSP 1 Score: 219 bits (558), Expect = 1.20e-68
Identity = 128/182 (70.33%), Postives = 143/182 (78.57%), Query Frame = 0
Query: 1 MWTSGTTPPNCQNVSAIPDSKSPENDPPLFVLQEAIESVNASSPIILTVDFSKSSSSPSQ 60
+WTSG TPPNC NV PD +SPENDPP VL+EAIESVN SSPIILTVDF KSSSS SQ
Sbjct: 76 IWTSGKTPPNCNNVGVTPDFESPENDPPPSVLEEAIESVNVSSPIILTVDFPKSSSS-SQ 135
Query: 61 LAYFVLYFTEVLNFTSEDNRTMNIFIDSVLMSTITTSIHKCTVVTLFPVHVKASTANVTL 120
AYFVLYFTEV + + NRT+NIFIDSVLMSTITT++ KCTVVTLFPV V+ STA VTL
Sbjct: 136 SAYFVLYFTEVEDLFDQKNRTINIFIDSVLMSTITTTVLKCTVVTLFPVDVRGSTAKVTL 195
Query: 121 AAANSSVPFPPLITAMEVFTKVNATNVTGDNIDIVAGDSTPSMRFTFLSFVLILCVSVLA 180
AAANSS PPLI+AMEVFTKV AT VAG + PS +FTFLS +L++CVSVL
Sbjct: 196 AAANSSANLPPLISAMEVFTKVIATGG-------VAGSNGPS-QFTFLSSILMICVSVLV 248
Query: 181 NL 182
NL
Sbjct: 256 NL 248
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V701 | 3.9e-91 | 100.00 | Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ... | [more] |
A0A0A0KLJ1 | 3.1e-72 | 86.19 | Malectin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G1776... | [more] |
A0A0A0KS42 | 5.5e-53 | 70.33 | Malectin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G1776... | [more] |
A0A5A7V3N2 | 5.2e-51 | 68.13 | Leucine-rich repeat receptor-like serine/threonine-protein kinase OS=Cucumis mel... | [more] |
A0A6J1CDC0 | 2.3e-46 | 64.64 | receptor-like protein kinase At5g59670 OS=Momordica charantia OX=3673 GN=LOC1110... | [more] |
Match Name | E-value | Identity | Description | |
KAA0062206.1 | 1.59e-119 | 100.00 | putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma... | [more] |
XP_011656170.1 | 6.13e-94 | 86.19 | probable LRR receptor-like serine/threonine-protein kinase At1g51810 [Cucumis sa... | [more] |
KGN49999.2 | 8.01e-88 | 86.19 | hypothetical protein Csa_000485 [Cucumis sativus] | [more] |
XP_038892896.1 | 6.97e-73 | 74.18 | uncharacterized protein At1g24485-like [Benincasa hispida] | [more] |
XP_011656171.1 | 1.20e-68 | 70.33 | leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 [Cuc... | [more] |
Match Name | E-value | Identity | Description | |