IVF0026039 (gene) Melon (IVF77) v1

Overview


Name	IVF0026039
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA polymerase II transcription factor B subunit 4
Location	chr05: 18194233 .. 18198667 (+)
RNA-Seq Expression	IVF0026039
Synteny	IVF0026039

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAGCTCCTTCGAAGCTCTACGCAGGTTCTCCTCCAATCCCTTTCTCCTTCCTTATGGGCACTCGGGTACAACTATCGGAATTGCAGTGGCTTATTCGTTTTTGTGATCTTTTAATTGTGTTGTTACAGATGATGTTAGCCTTCTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTAATTGATAAATTATCTCTTTTCCTGCGAACCATTCTACCCAGTAGGTCTTTCGGATAGAACTGTAATGAACATTAGTATTTTCTTTTTCTTTCTGTTTTGGGTGTATAGGTACTTGCTTTTCTGAACTCCATTTTAGTACTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATACGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTTGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACAATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTGTATCCTTGTTGATGATTGTTGGTGCTGATTATTTGCTTGTTTATGCTCATAAGTAAAGCTCGCCATCAATTCATTAACTCGAGCTTATGAGGAAAAGTCTAGACTCTACATCCCCATGTTCTACAATTAGAATGTTTCAATAGGCCATTAATTTAGCAGTCAGGACTAAACAGTATCTATTGTGATGGGAGTGGCATTTGGTCGAAATTTGTAGTAATGAGTATGGTTGCAAAATGTTGTAAGAGTTATGATTGGCACGATGGAATTTTCTAATAGCCATACTGTTTAAATGTAACTTGAGTAATTTAAGATTCATCAACAGTCTGTTATGCTCCAAATGCTTGACCTTGTGATTAGATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAGTAAGCATTTGTTTCTGTTCTGCATAATTTATTCCCAGTTTGCATATCCTGATTTTTTTTGTTGCTTACATATACTATTTGTTTTTTTTTCCTTTTTTGAAAATGTGACTAATCTATGTGAATATATTTTACTTTGAGCGTAGATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAGTAAGATTATTTTCTTTATTCTCTAAAAATATGTATACATTTCTAATGAATTTATTTTATTTGTGCAATTTTCTTTAGTAATGGGAAACAAACTTTAAAATCTTTCTTCTAGTGACTGTTTTTCTCTTCCAGATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTTGTATTTTTTGTTCACGCTTCTGTGTGTTCTTATATGACTTTACTAACTTCTTCCATCAATCACAAACTCTCATAATTTGAACTGGGTGATATCAGTAAGTAATGAAAATGTGGCAACAAGTATTTCATGGAAATGCTCGAGACAAGTTTCCTCTATTTAACTTGGTCTTTGTTTGGTTTTGATGGCAGAAAATGGTGCTGGATTAAACCTTTTTGTTCGTATCTTTTCCTATATGAATTTAAAGATATCAATTATTTCTTCTCCTATTTCGAGATATCCCATTTGTCCCACAGGCGAATTTGAATTTGAATGCATTGACAAGACTAAGTAATTTATATTGATCTACTTTCTTGGAGTCCACAACTGAATATCTAGTCTCTACCGTTAGAGTTGAACTCCAATATTCGGAATAAGTTTTATTATTTAATTTGCTTGCCCTGTGGATGGAAAGTTGATGGATCTCTGGCATATTTTCTATTATTAGTCTTGTCAGATTCAATTGTGAAAGTTTTCATGTTATATGCATGCATGTAAGTGTATGTATAGAATAAGAAACAAGAACAAAGCTAGAAAGCAAAGATTCCTTAGAAAGGACAAGGGGAGAATTGGGAGTTTCCCCGAAGGAACAGATTCTGGGATAGAAGTTTATAAGAAAAACTTCAGTCCAAGTTATCGATAGAGTAGAGAAGTGGCAAAACCCTTATGTAAGGTACTCCAATTTAAGGCTTTAACTATACAAGCTCCAAAAGTTAGCAGAAAAGTCCTGAAAAAACCAATAAAGAGATTTATTTTACAATTGGAAAAATTATAAATAGAGATGCACTTTTAAATTTCTCTCTCCAACAACACATCAAATTCGAAGGTGAAAACTGTTTTAGATTTTGAATTGCTAGTTTTCTTTTTCGTTATGACAGCTTAACATAACAATATTGACCAAAGTATGATTAATTTCTTGATGTGAAGTAATTACATCTGCAATGTTCATGATAGTGGTAATCATTTGGTAACAAGCACAAAGTTGGTAGTCAATGAGATTGAAGAAATGTGAATCTAATCTCCATTCACATTTTCATCTATGGGTTTGCTTTAAACTTTTATGTGCGCTAGTCACTCATTTGAAGTCCACAGCTGTCCGTTTTCCGCTTCATGTTGCTTTTAACTATAAACTACATTCAACATTCAACCATGTTTCCGTTTGTATAAGTATCCTATGATGTACAATTTTATCATTCTTGCTTCAGGTTTCTATAGATTCATGTTACATTGGTTCACACAATTCTGCATTTCTTCAGCAGGTAAGCTAACTGCACATTGTTCTTAATAGGGTTTTTACTTTTCCTGGAATCTTACCATCTCCGGATGTATCATCTATTCATTGCTGCTGATGATTTGATTTCTGATGCTAGGCCTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCGCTGTAGGTTTTATTTTCCTATGTGCTTTTATTGATCATGGTCTGGCCGTTCCGCGGGGTGGGGGGGTGGTCCTTGTTTTTTGTAATTTCTTGCTTAGGCTGATGTGATATTCTATCGTTATTTTTCTGCAGACTGTTTTTGGCACTGATTTGCATTCCCGGACCTTCTTACAGCTTCCAAAATCCGTTGGTGTTGATTTTCGTGCATCGTAAGTCTGCAGTCTTGTGAATACACAATTCTGTTGTTTTGTGCTTATTATTTTGTGTGGCTTACTATGGCCTTCTACCTATTTACACCTCTCATCATCATTTTGTCCTCTCGGAATCCAACAGAGATGGAAATTGCTAATTCCAAATAAATTGGGAATTTGCAGGTGTTTTTGCCATAAAAAAACGATCGACATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTAAGCGAAAGGTCAAGCCCCTTTTATATGTGGTTTCCTAAATTTTATTGAAGGTAGTTTGACATTGACTTTCGAGAATGCTGTTGTCTGTTTGGCTTTATAAGTATGAAAAGGAAGATGAAGAGGAACCTGATTTTTGAGAACTCATTATGCTAGGGCTTTTTCCTTGACGGTTATATAACACTTCGGTGTGACTTGATGTCATGACACAAGGGGGGAGCTTTGTAGCTTAGTATTGCCCCTAGATAATGGTTGCCTAAATATGATGCTAAAAGATTCTACCACGCCTTTAGTTTCTTACGGGGTGTTTGAAAAACCGGAATGTAATTAGAATCACAGAAAATTAGAGGGGTGTTGGAAAGCGTGTTGAATTGAGGGCAAAACAAAGAATGGGGTCGTAAAGCGCAAAGACCCTTCTGAAATGCTCAAAAAACTTACATTGTTGTTTGCCTACTGTCACTTTTGTCTTACTTCAGAACAAGATTGAATGTATTAATATTAATGAGTTTCAATTTCTTTCAGGTCAGTTTTTGGTGAGACACCTGTAGAACTCGATTCATTGTCTAAACTGAAAAGAAAAACTCCAGAATGATATGACTTTGAACCATTTGTTTTCACTTCTATGGCTATAGAAATTGTTCCATTTTTCTTCCCTTTCTTGAAGCTGTTGGAAAGTGGAATTCATTTGGTTCACTTGGCACGAACGGAGATGACTTAATGAAACAGTTGCTGAAAGAGTCAATCTCAACATTGTACAATTCATATCAATAGTGGTCGAATTCGGAGGGGATAACATGGAACGATGGTTAGCAAGGTCACGCATTATTCCAGTCTGATACAAATTGGGTACAAGGTTTTTATGGAACTTGAGACTTTAACTGGAAAAGTTAGATTAATGTAATTGTACTGAAAGCTTGAGTGGTTTATAAGCACATGTAGATTTAGATTTCGCTCACGCTTGACAGTATTCCAAAGCTTACCTTTGCAAAAGTAGACAAGGATACGGACAGTCACATTGTTGATTGAGTCGTGTTACTTTGTTTTTTGTGGAACCTCATACTTTGAAATTTTACAAGTTTGAAATGTGCCAAGTGAATCATATAATAAAACAATTTGAGC

mRNA sequence

ATGGCTTCAGCTCCTTCGAAGCTCTACGCAGATGATGTTAGCCTTCTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTACTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATACGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTTGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACAATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTTCTATAGATTCATGTTACATTGGTTCACACAATTCTGCATTTCTTCAGCAGGCCTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCGCTACTGTTTTTGGCACTGATTTGCATTCCCGGACCTTCTTACAGCTTCCAAAATCCGTTGGTGTTGATTTTCGTGCATCGTGTTTTTGCCATAAAAAAACGATCGACATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGTGAGACACCTGTAGAACTCGATTCATTGTCTAAACTGAAAAGAAAAACTCCAGAATGATATGACTTTGAACCATTTGTTTTCACTTCTATGGCTATAGAAATTGTTCCATTTTTCTTCCCTTTCTTGAAGCTGTTGGAAAGTGGAATTCATTTGGTTCACTTGGCACGAACGGAGATGACTTAATGAAACAGTTGCTGAAAGAGTCAATCTCAACATTGTACAATTCATATCAATAGTGGTCGAATTCGGAGGGGATAACATGGAACGATGGTTAGCAAGGTCACGCATTATTCCAGTCTGATACAAATTGGGTACAAGGTTTTTATGGAACTTGAGACTTTAACTGGAAAAGTTAGATTAATGTAATTGTACTGAAAGCTTGAGTGGTTTATAAGCACATGTAGATTTAGATTTCGCTCACGCTTGACAGTATTCCAAAGCTTACCTTTGCAAAAGTAGACAAGGATACGGACAGTCACATTGTTGATTGAGTCGTGTTACTTTGTTTTTTGTGGAACCTCATACTTTGAAATTTTACAAGTTTGAAATGTGCCAAGTGAATCATATAATAAAACAATTTGAGC

Coding sequence (CDS)

ATGGCTTCAGCTCCTTCGAAGCTCTACGCAGATGATGTTAGCCTTCTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTACTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATACGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTTGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACAATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTTCTATAGATTCATGTTACATTGGTTCACACAATTCTGCATTTCTTCAGCAGGCCTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCGCTACTGTTTTTGGCACTGATTTGCATTCCCGGACCTTCTTACAGCTTCCAAAATCCGTTGGTGTTGATTTTCGTGCATCGTGTTTTTGCCATAAAAAAACGATCGACATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGTGAGACACCTGTAGAACTCGATTCATTGTCTAAACTGAAAAGAAAAACTCCAGAATGA

Protein sequence

MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE

Homology

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BLAST of IVF0026039 vs. ExPASy Swiss-Prot
Match: Q8LF41 (General transcription and DNA repair factor IIH subunit TFB4 OS=Arabidopsis thaliana OX=3702 GN=TFB4 PE=2 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 3.1e-119
Identity = 215/299 (71.91%), Postives = 247/299 (82.61%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGR---MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTM 120
            TGY+SC Y+Y+SS  SNHG  +     MPA+   LLK LEEFV  DE+  KE+     +
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 -SSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVS 180
            S LLSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MV 
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP 180

Query: 181 IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGV 240
           IDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL T+F TDLHSR F+QLPK +GV
Sbjct: 181 IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV 240

Query: 241 DFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPV-ELDSLSKLKRKTP 295
           DFRASCFCHKKTIDMGY+CSVCLSIFC+HHKKCSTCGSVFG++ + +  S S  KRK P
Sbjct: 241 DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKAP 299

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BLAST of IVF0026039 vs. ExPASy Swiss-Prot
Match: Q86IB5 (General transcription factor IIH subunit 3 OS=Dictyostelium discoideum OX=44689 GN=gtf2h3 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.5e-49
Identity = 105/255 (41.18%), Postives = 151/255 (59.22%), Query Frame = 0


Query: 34  FSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMP------ 93
           F+KFL H + F+N+ L+LNQ N++ +I +      +++  S+   +  E   +       
Sbjct: 92  FNKFLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQLNE 151

Query: 94  --ALCTRLLKNLEEFVIGDEQ----SIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSL 153
              L     K ++  ++   Q     IK D +   +SS  S S+S+ALCYI ++ R  + 
Sbjct: 152 NGELLPTPNKTIQGQILAKLQKLDLEIKHD-QTDILSSSFSASMSIALCYINRIKRE-TP 211

Query: 154 HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSCYIGSHNSAFLQQASYITGGVY 213
             +PRIL    SPD   QY+++MN IFS+Q+  + +DSC +   +S FLQQAS++T G+Y
Sbjct: 212 TIKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQASHLTSGIY 271

Query: 214 LKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSI 273
           LKPQ+ + L QYL T F  D  SR  L  P    VD+RASCFCHK+ +D+GYVCSVCLSI
Sbjct: 272 LKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVCLSI 331

Query: 274 FCKHHKKCSTCGSVF 277
           FC H   CSTCG+ F
Sbjct: 332 FCGHSSSCSTCGTKF 344

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BLAST of IVF0026039 vs. ExPASy Swiss-Prot
Match: Q13889 (General transcription factor IIH subunit 3 OS=Homo sapiens OX=9606 GN=GTF2H3 PE=1 SV=2)

HSP 1 Score: 186.0 bits (471), Expect = 6.0e-46
Identity = 113/306 (36.93%), Postives = 171/306 (55.88%), Query Frame = 0


Query: 11  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYA 70
           D+++LLV+++D NP +W   +L  S+F     +  V+   NS L +N+ N++ VI +   
Sbjct: 6   DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 65

Query: 71  SCKYLY---------------NSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSI-- 130
             ++LY               N   ++  G +DG+       LL +  E ++ + + +  
Sbjct: 66  ESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKY-----ELLTSANEVIVEEIKDLMT 125

Query: 131 KEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPRILCLQGSPDGPEQYVAIMNA 190
           K D KG    +LL+GSL+ ALCYI ++ +    +   + RIL ++ + D   QY+  MN 
Sbjct: 126 KSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 185

Query: 191 IFSAQRSMVSIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRT 250
           IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+
Sbjct: 186 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 245

Query: 251 FLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSL 293
            L LP  V VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC + F    + L  +
Sbjct: 246 QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF---KISLPPV 302

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BLAST of IVF0026039 vs. ExPASy Swiss-Prot
Match: Q05B56 (General transcription factor IIH subunit 3 OS=Bos taurus OX=9913 GN=GTF2H3 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-45
Identity = 114/305 (37.38%), Postives = 168/305 (55.08%), Query Frame = 0


Query: 11  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYA 70
           D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L +N+ N++ VI +   
Sbjct: 6   DELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 65

Query: 71  SCKYLY----------------NSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIK 130
             ++LY                 SS ++  G +DG+   L        EE     +   K
Sbjct: 66  ESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMTK 125

Query: 131 EDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPRILCLQGSPDGPEQYVAIMNAI 190
            D +G    +LL+GSL+ ALCYI ++ +    +   + RIL ++ + D   QY+  MN I
Sbjct: 126 SDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 185

Query: 191 FSAQRSMVSIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTF 250
           F+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+ 
Sbjct: 186 FAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ 245

Query: 251 LQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLS 293
           L LP  V VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC + F    + L  + 
Sbjct: 246 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF---KISLPPVL 303

[Close]

BLAST of IVF0026039 vs. ExPASy Swiss-Prot
Match: Q8VD76 (General transcription factor IIH subunit 3 OS=Mus musculus OX=10090 GN=Gtf2h3 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.9e-45
Identity = 116/305 (38.03%), Postives = 168/305 (55.08%), Query Frame = 0


Query: 11  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYA 70
           D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L +N+ N++ VI +   
Sbjct: 6   DELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHIQ 65

Query: 71  SCKYLYNSSSYSNHGLED-----GRMPALCT---------RLLKNLEEFVIGDEQSI--K 130
             + LY      N GL D     G     C           LL    E +  + + +  K
Sbjct: 66  ESRLLYPG---KNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEIKDLMTK 125

Query: 131 EDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPRILCLQGSPDGPEQYVAIMNAI 190
            D KG    +LL+GSL+ ALCYI +V ++   +   + RIL ++ + D   QY+  MN I
Sbjct: 126 SDIKGQHTETLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 185

Query: 191 FSAQRSMVSIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTF 250
           F+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  VF  D   R+ 
Sbjct: 186 FAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ 245

Query: 251 LQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLS 293
           L LP  + VD+RA+CFCH+  I++GYVCSVCLSIFC     C+TC + F    + L  + 
Sbjct: 246 LILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF---KISLPPVL 303

[Close]

BLAST of IVF0026039 vs. ExPASy TrEMBL
Match: A0A1S3B4H7 (LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103485913 PE=3 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 1.6e-166
Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 296
           SCFCH KTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE
Sbjct: 241 SCFCHXKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 295

[Close]

BLAST of IVF0026039 vs. ExPASy TrEMBL
Match: A0A0A0LMM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072450 PE=3 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 1.3e-165
Identity = 291/295 (98.64%), Postives = 294/295 (99.66%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVFGTDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 296
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDS+SKLKRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTPE 295

[Close]

BLAST of IVF0026039 vs. ExPASy TrEMBL
Match: A0A6J1CM09 (RNA polymerase II transcription factor B subunit 4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012196 PE=3 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 2.1e-158
Identity = 278/295 (94.24%), Postives = 286/295 (96.95%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MAS PSKLYADDVSLL+VLLDTNPFFWSTSSLPFSKFLSHVLAFLNSIL LNQLNEVVVI
Sbjct: 1   MASVPSKLYADDVSLLMVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILDLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSS+SN GLEDGRMPALCTRLLKNLEEFVI DEQS+KEDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCTRLLKNLEEFVIADEQSVKEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVF TDLHSR FLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRAFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 296
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPV++DS+SK KRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVDVDSVSKQKRKTPE 295

[Close]

BLAST of IVF0026039 vs. ExPASy TrEMBL
Match: A0A6J1JZK7 (RNA polymerase II transcription factor B subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111489720 PE=3 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 4.6e-158
Identity = 278/295 (94.24%), Postives = 286/295 (96.95%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEEF+IGDEQSIKEDP+ GTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPREGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCY+QKVFRSGSLHP PRILCLQGSPDGPEQYVAIMN+IFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYLQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVF TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 296
           SCFCHKKTIDMG+VCSVCLSIFCKHHKKCSTCGSVFGETPV +DS+SKLKRKTPE
Sbjct: 241 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCGSVFGETPVAVDSVSKLKRKTPE 295

[Close]

BLAST of IVF0026039 vs. ExPASy TrEMBL
Match: A0A6J1FJQ6 (RNA polymerase II transcription factor B subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111444867 PE=3 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 2.3e-157
Identity = 279/296 (94.26%), Postives = 287/296 (96.96%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEEF+IGDEQSI+EDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMN+IFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVF TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDS-LSKLKRKTPE 296
           SCFCHKKTIDMG+VCSVCLSIFCKHHKKCSTCGSVFGETPV +DS +SKLKRKTPE
Sbjct: 241 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCGSVFGETPVAVDSVVSKLKRKTPE 296

[Close]

BLAST of IVF0026039 vs. NCBI nr
Match: XP_008441918.2 (PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 [Cucumis melo])

HSP 1 Score: 592 bits (1527), Expect = 1.64e-213
Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 295
           SCFCH KTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE
Sbjct: 241 SCFCHXKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 295

[Close]

BLAST of IVF0026039 vs. NCBI nr
Match: XP_004152842.1 (general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus] >XP_011648981.1 general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus])

HSP 1 Score: 589 bits (1519), Expect = 2.72e-212
Identity = 291/295 (98.64%), Postives = 294/295 (99.66%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVFGTDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 295
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDS+SKLKRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTPE 295

[Close]

BLAST of IVF0026039 vs. NCBI nr
Match: XP_038886688.1 (general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida] >XP_038886689.1 general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida])

HSP 1 Score: 579 bits (1493), Expect = 2.51e-208
Identity = 285/295 (96.61%), Postives = 290/295 (98.31%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAP KLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPPKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLL NLEEFVI DEQS+KEDPKGGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLNNLEEFVISDEQSLKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVFGTDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 295
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGE+P+ELDS+SK KRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGESPIELDSVSKQKRKTPE 295

[Close]

BLAST of IVF0026039 vs. NCBI nr
Match: XP_023550583.1 (RNA polymerase II transcription factor B subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568 bits (1464), Expect = 6.85e-204
Identity = 280/295 (94.92%), Postives = 287/295 (97.29%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEEF+IGDEQSIKEDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMN+IFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVF TDLHSRTFLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 295
           SCFCHKKTIDMG+VCSVCLSIFCKHHKKCSTCGSVFGETPV +DS+SKLKRKTPE
Sbjct: 241 SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCGSVFGETPVAVDSVSKLKRKTPE 295

[Close]

BLAST of IVF0026039 vs. NCBI nr
Match: XP_022141943.1 (RNA polymerase II transcription factor B subunit 4 isoform X1 [Momordica charantia] >XP_022141944.1 RNA polymerase II transcription factor B subunit 4 isoform X1 [Momordica charantia] >XP_022141945.1 RNA polymerase II transcription factor B subunit 4 isoform X1 [Momordica charantia])

HSP 1 Score: 565 bits (1457), Expect = 8.00e-203
Identity = 278/295 (94.24%), Postives = 286/295 (96.95%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MAS PSKLYADDVSLL+VLLDTNPFFWSTSSLPFSKFLSHVLAFLNSIL LNQLNEVVVI
Sbjct: 1   MASVPSKLYADDVSLLMVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILDLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
           GTGYASCKYLYNSSS+SN GLEDGRMPALCTRLLKNLEEFVI DEQS+KEDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSHSNRGLEDGRMPALCTRLLKNLEEFVIADEQSVKEDPRGGTMSSL 120

Query: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVSIDSC 180
           LSGSLSMALCYIQKVFRSGSLHP PRILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGVDFRA 240
           YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TVF TDLHSR FLQLPKSVGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRAFLQLPKSVGVDFRA 240

Query: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSLSKLKRKTPE 295
           SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPV++DS+SK KRKTPE
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVDVDSVSKQKRKTPE 295

[Close]

BLAST of IVF0026039 vs. TAIR 10
Match: AT1G18340.1 (basal transcription factor complex subunit-related )

HSP 1 Score: 429.5 bits (1103), Expect = 2.2e-120
Identity = 215/299 (71.91%), Postives = 247/299 (82.61%), Query Frame = 0


Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNHGLEDGR---MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTM 120
            TGY+SC Y+Y+SS  SNHG  +     MPA+   LLK LEEFV  DE+  KE+     +
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 -SSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVS 180
            S LLSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MV 
Sbjct: 121 PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP 180

Query: 181 IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLATVFGTDLHSRTFLQLPKSVGV 240
           IDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL T+F TDLHSR F+QLPK +GV
Sbjct: 181 IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV 240

Query: 241 DFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPV-ELDSLSKLKRKTP 295
           DFRASCFCHKKTIDMGY+CSVCLSIFC+HHKKCSTCGSVFG++ + +  S S  KRK P
Sbjct: 241 DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKAP 299

The following BLAST results are available for this feature:

BLAST of IVF0026039 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LF41	3.1e-119	71.91	General transcription and DNA repair factor IIH subunit TFB4 OS=Arabidopsis thal...	[more]
Q86IB5	7.5e-49	41.18	General transcription factor IIH subunit 3 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q13889	6.0e-46	36.93	General transcription factor IIH subunit 3 OS=Homo sapiens OX=9606 GN=GTF2H3 PE=...	[more]
Q05B56	1.3e-45	37.38	General transcription factor IIH subunit 3 OS=Bos taurus OX=9913 GN=GTF2H3 PE=2 ...	[more]
Q8VD76	3.9e-45	38.03	General transcription factor IIH subunit 3 OS=Mus musculus OX=10090 GN=Gtf2h3 PE...	[more]

BLAST of IVF0026039 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4H7	1.6e-166	99.66	LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 OS=Cucum...	[more]
A0A0A0LMM2	1.3e-165	98.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072450 PE=3 SV=1	[more]
A0A6J1CM09	2.1e-158	94.24	RNA polymerase II transcription factor B subunit 4 isoform X1 OS=Momordica chara...	[more]
A0A6J1JZK7	4.6e-158	94.24	RNA polymerase II transcription factor B subunit 4 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FJQ6	2.3e-157	94.26	RNA polymerase II transcription factor B subunit 4 OS=Cucurbita moschata OX=3662...	[more]

BLAST of IVF0026039 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441918.2	1.64e-213	99.66	PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit...	[more]
XP_004152842.1	2.72e-212	98.64	general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus] >...	[more]
XP_038886688.1	2.51e-208	96.61	general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida]...	[more]
XP_023550583.1	6.85e-204	94.92	RNA polymerase II transcription factor B subunit 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022141943.1	8.00e-203	94.24	RNA polymerase II transcription factor B subunit 4 isoform X1 [Momordica charant...	[more]

BLAST of IVF0026039 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18340.1	2.2e-120	71.91	basal transcription factor complex subunit-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004600	TFIIH subunit Tfb4/GTF2H3	PFAM	PF03850	Tfb4	coord: 13..273 e-value: 1.1E-91 score: 307.1
IPR004600	TFIIH subunit Tfb4/GTF2H3	PANTHER	PTHR12831	TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED	coord: 1..279
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	3.40.50.410	von Willebrand factor, type A domain	coord: 10..220 e-value: 1.9E-61 score: 209.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026039.3	IVF0026039.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0046872	metal ion binding