IVF0025965 (gene) Melon (IVF77) v1

Overview


Name	IVF0025965
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Location	chr03: 23535363 .. 23539465 (+)
RNA-Seq Expression	IVF0025965
Synteny	IVF0025965

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGACTCAGAAACTTCGGTCTACTTGAGCTGAGGGAGAAGGATAATGCTATGTCGTCCCTGAATGTCACCACCGCTTTTTTATCACTCCGGCAGCCGGAATTTTTCTCCGACAATGTAAATCGTCGATGCCTCATCGGAAATTTCCCTAATCGGAAACCAACCAGGCCGCTCTCCGTCGCTGCGAATTCTTCGGAGCCATTGCTGTCGACTCCTGCGGAAAAGCCTGAGATCGAGCTCGAATTTATTGCGGTAACTTCGCGTGGAAGATTTCGTTATCGGTAATTTTATTTTAGTTCCGTGGATTTTGATGTTTGGTGACTGTTTGATGTTTTTGGTTCGAACTTCGAACAGCCGAAGCCGGGAAGCGACGGATCGTTTCCGGTGGATACGGTCAAGGCGATAAGCGGCGACAAGCTTTTGAGGAATATAATGCTGGATAATAAAATCGAGTTGTACGCCCCCTATGTAAGTTTTGATTTCTGCACAATACGGAGTGAGTTTGTGAATTGTGATTTGTTTTTTAACTGATTCGTGTGTTGCACTAACCCTGTAAAGAGATTTGATCATCGCAAAGAATATAATGGATCATTAATGTTATTGTTTTCAACTGCTAGTAAGTAGTAATGTGTGAGTAAAGTGAAGGAAAGCATGATATGGAATGACCATGGATCTCGTCTACGACGGTATTGGATAATGATGACTGTTTCTCGAAACCTTTTAAAGGAATTTGAGCTGAAATTAAAATACCATATTTGGAATGACGCCTCACTCTGTCTGATCATTATGTATTAGTTAAACAATGGCCTTTACATTTCAGTCTTTATTCTCAACAATTTCCATAATATATAGTTCAATCCAGTAAGGCCTAAAGACTAGAGTAATCGTTTTAATTAAGGTATCTTTACTAACCAATTAGCTAATAGTATGTTGTTTTGGTCAAAGTTACCCATACGCTGTAATAAATTTTTAAAAAATTAAGCTTAAAAACACTACTTTCACTGTAGTCTGTTTGTTTTTTAATTTAGTTAAGAATTCAATGTTTCTTAATGAATGTAGATATTGTGAGAAAACAAATACAATGAAGCTGTGGTCAAACGGGATGGACTAATTCTTTTCTTTTTTTTCTCTTTTAAAAGGTCTAAGTACAAACTGGGATGGGAAAAATTGAACCCAGGAGCTCTTATCCTCGAAAACATAATAGATGTCACTTGAATTGAGCTCATGTTGATTGGAATAGTTAAACTTTCATTGTTCTCGTGATTAATCCATGATTGATTTCCAAAGCATTGTTAATATGTTACATTTTACCCAACCTATCGACTTAAGTTTAACATGTTATAACAGCACGAGATCCTGAGGTATGAAAGCCTATAATGTCATTTTTTATCTTGTGCAAATTTCTAAGCGTACAGAACCGAAGGAATATTGAATAATTTATAAAAGATGAGTGTTTAGCAGTCATTTTACAATGAAAATAATCTTATATTCTAATTACTTAATCCTTCTCGCCTCTGTTTTCTTGTATTATATGTAATTGAAATGCATCCAAATATTCTCAGGGAAAATTGATGAACTGTGGTGGTGGTGGAAGTTGTGGGACCTGTATTGTCGAGGTAGTTTCCTAGCATACACCGTTGTAGTTAAGAGCTCCAGTACTTTTTCTATGACCATTGTTTTGTCTGCTAGCCTACTGGTGAAGTAACAAAATATCAAATTGCCTCTTTTGAGGTTGGAGGTCAGACTGTGGTCTGCTTCTTCTGGACGAAGCAGAACAAATGCACGTCAAAGTTGTAAATAATTGAGATGGAAAATTGGAGAGTAGAGAGTTCGCTCGTAGGCTAAAAAACTGGTTTTTTCTGATTGCAAAACAGTTGGAAAAGATGCTGTTTTTTTTTTGTTCTATCATGCAATTGTTTACTTTGGAAAATTTGGTTTGGTATCATTTGGTTTTTGGTTTTTAGTTTTTAGTTTTTGAAAACCAAGCCTATAACAGTTACCACCTTTATTTTTCTTGTTTTGTTATTGTTGTTTTGCTATCTACGTTTTACCAATATATTTTAAAACTACATCAATCTTTTTTAAAAACATTTGTTTAAGAATAATACTTTTTACCAAAAAAGATAGGAAAACATTATAAGAAATTAAGAGGACGTAGACTTGATTTTAAAAAACACAAGGATTGTTAAATGGGGTTAACAATTCACTCATTCAATTTTCCTTTTTCATCATCGTCACTGCATCACATCTCTTGTTGAGTATAGATTGTAGGTTGAGGATCTAAAGCAGAGAACAGAGATGTACATATCTTTTCTTATTAATACAAAGAACTGTATATCTGATAAGGGTCTCTACATCTTTGTGCAGATACTTGATGGAAAGGATCTATTGAATGAGAGAACAAATACTGAACTCCGTTACCTGAAGAAGGTCTGACCGTAATTGATAGACCTCTCGCTTTTTCCCAGCCTTTTTGTTCTTTTAAAACCTTCTTATTCACCACGGTACTTCCCATATTACGTTATTAGCTATGGATTAGTTTTAAATTTAGGCTAATAGGAGCATAACTCATTACTCCTCTTTTGAGGTCGGAGATTCATATCCGAAGGTCCCCCAGTATGGATCTTTTCTCTACAAGTCTGTGTGTTGTGTTAATCTCCTTAAAGGTCTGACAAGAAAACATTTTATCCCCAAAACTGCATGTGTAGGACCAAGTTATGATAGGTTCTATAATAATTTCATCACCATTTCTCTATGGTTCTATATCTACTGCTCACTTCTTTAGGATTGTTAGCCCAAACAAATCGTAGTCCAGGTAAACAAGCATCAGGGAATTGTTTGATCGGTTCAATTAATTTTAATCTAATAACTTCAACTTTCTGATTTAGTGTCAGGAGCCTGATTTTCTTCATGTTTCCTCGAAATTTTTCATTCACCATTTGTTCGCTATGGAGCAATATTAACTTTGGTTGTTACAATTCAGAAACCCGAAAGTTGGAGGCTTGCTTGTCAGACAATTGTTGGCAATAAAGAGAACTCTGGAAAGGTAATGCCAAGAACCCTTCACCTTATTACCTATTTGCTTCTTTGTTCAGATTTACATGACAATCCTTCTATCATTGCATTGAAAATATAAGATCCATAATAGCCCTAGATGTCCTTAACATGATTAGACTGGCATCTGCTGAATGGCAAGCTCTCCCGGCACATGGCAAAGCCAATTCTAGTATGGAGGGACAAAATTTTACTTCAAAATTTTAATACCTATATATATAGGCTAAATTAGAAATAATACCTTAAACCTTATCATTGTTCAAAAAACACTATCTTGCTAAAAGTTGCAATATCACCGCCGGTTACCTTGGAGTAGAAATACATTAAAATGTTGAACGAACATTGATACTTGATATGTTGAGTGAACGCTGATACTTGATTGGAATGACGTGGCAGTAACCTAGAATGGTATGGTAGCAGTTTCAATTTCCATTTCAGGTCACACAACTCACATCACAACATTCTAGGTCTTAATTTCCATTCAACATTCCAATGAATTTCTACACCAAGACAAATTAATGAAAAATTAAAGTTAATTTTACAACTTCTAAATGTGTATGGGAGTACTTCTGAAACAAAGGGTAATATAATAGAATCTTAATTTTATATAAGAGTTTGAATCTAAGATAAAGTAAGGACAATAAACAATTGTCTTTCTCCTTCTTCATTCTATCCTTGTTCTACAACCCCTTCCTTCCAGTAATATAGGTGGACCATTGGTTACAGGTTGTGGTCCAAAGGTTGCCCAATGGAAGAAGTGATTTAGAGTTGCATCTTTATGTAGAGGCTGTGATTTGTTGCAAAAATCAGTAGATAATATTATATCCTACACCCAACCAATACTACCTTGAAAGCTGCTGCTCATAAGTCACAAACAAATTTGTGGCTTAGCACTCAAATACTGCCTTTCTGTAAGTTGAAATTGTATATTTTGAGTAACTTAGTTGAAAAAAGAAAAACCAAGTCATTTCTCATTGTTATTACTGGCCCATGCATGGTTTACTCCCATGTTTTTATACTTAATCACAAATATAGTTCAACCGGTATAAAC

mRNA sequence

ACGACTCAGAAACTTCGGTCTACTTGAGCTGAGGGAGAAGGATAATGCTATGTCGTCCCTGAATGTCACCACCGCTTTTTTATCACTCCGGCAGCCGGAATTTTTCTCCGACAATGTAAATCGTCGATGCCTCATCGGAAATTTCCCTAATCGGAAACCAACCAGGCCGCTCTCCGTCGCTGCGAATTCTTCGGAGCCATTGCTGTCGACTCCTGCGGAAAAGCCTGAGATCGAGCTCGAATTTATTGCGCCGAAGCCGGGAAGCGACGGATCGTTTCCGGTGGATACGGTCAAGGCGATAAGCGGCGACAAGCTTTTGAGGAATATAATGCTGGATAATAAAATCGAGTTGTACGCCCCCTATGGAAAATTGATGAACTGTGGTGGTGGTGGAAGTTGTGGGACCTGTATTGTCGAGATACTTGATGGAAAGGATCTATTGAATGAGAGAACAAATACTGAACTCCGTTACCTGAAGAAGAAACCCGAAAGTTGGAGGCTTGCTTGTCAGACAATTGTTGGCAATAAAGAGAACTCTGGAAAGGTTGTGGTCCAAAGGTTGCCCAATGGAAGAAGTGATTTAGAGTTGCATCTTTATGTAGAGGCTGTGATTTGTTGCAAAAATCAGTAGATAATATTATATCCTACACCCAACCAATACTACCTTGAAAGCTGCTGCTCATAAGTCACAAACAAATTTGTGGCTTAGCACTCAAATACTGCCTTTCTGTAAGTTGAAATTGTATATTTTGAGTAACTTAGTTGAAAAAAGAAAAACCAAGTCATTTCTCATTGTTATTACTGGCCCATGCATGGTTTACTCCCATGTTTTTATACTTAATCACAAATATAGTTCAACCGGTATAAAC

Coding sequence (CDS)

ATGTCGTCCCTGAATGTCACCACCGCTTTTTTATCACTCCGGCAGCCGGAATTTTTCTCCGACAATGTAAATCGTCGATGCCTCATCGGAAATTTCCCTAATCGGAAACCAACCAGGCCGCTCTCCGTCGCTGCGAATTCTTCGGAGCCATTGCTGTCGACTCCTGCGGAAAAGCCTGAGATCGAGCTCGAATTTATTGCGCCGAAGCCGGGAAGCGACGGATCGTTTCCGGTGGATACGGTCAAGGCGATAAGCGGCGACAAGCTTTTGAGGAATATAATGCTGGATAATAAAATCGAGTTGTACGCCCCCTATGGAAAATTGATGAACTGTGGTGGTGGTGGAAGTTGTGGGACCTGTATTGTCGAGATACTTGATGGAAAGGATCTATTGAATGAGAGAACAAATACTGAACTCCGTTACCTGAAGAAGAAACCCGAAAGTTGGAGGCTTGCTTGTCAGACAATTGTTGGCAATAAAGAGAACTCTGGAAAGGTTGTGGTCCAAAGGTTGCCCAATGGAAGAAGTGATTTAGAGTTGCATCTTTATGTAGAGGCTGTGATTTGTTGCAAAAATCAGTAG

Protein sequence

MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPEIELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTCIVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLPNGRSDLELHLYVEAVICCKNQ

Homology

[Close]

BLAST of IVF0025965 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-29
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 0


Query: 31  NFPNRKPTRPLSVAANSSEPLLSTPAEKPEIELEFIAPKPGSDGSFPVDTVKAISGDKLL 90
           N    K  R +S A  S  P    P E P ++  F+      DG+  V   +A  G K L
Sbjct: 40  NAARTKTVRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQK-L 99

Query: 91  RNIMLDNKIELYAPYGK-LMNCGGGGSCGTCIVEILDGKDLLNERTNTELRYLKKKPESW 150
           R+IMLD+ IELY PY K L NC G G+C TC+VEI++GK+LLN RT+ E   LK+KP++W
Sbjct: 100 RDIMLDSNIELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNW 159

Query: 151 RLACQTIVGNKENSGKVVVQRLPNGRS 177
           RLACQT VGN +++G VV+Q+LP  ++
Sbjct: 160 RLACQTNVGNPDSTGLVVIQQLPEWKA 185

[Close]

BLAST of IVF0025965 vs. ExPASy Swiss-Prot
Match: A3MYM7 (Na(+)-translocating NADH-quinone reductase subunit F OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=nqrF PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.8e-04
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 111 CGGGGSCGTCIVEILDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 158
           CGGGGSCG C V++  G     E   TEL ++ KK   E WRLACQ  V
Sbjct: 71  CGGGGSCGQCKVQVKSGG---GEILPTELSHISKKEAKEGWRLACQVNV 116

[Close]

BLAST of IVF0025965 vs. ExPASy Swiss-Prot
Match: Q7VNU4 (Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=nqrF PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-04
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 111 CGGGGSCGTCIVEILDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 158
           CGGGGSCG C V++  G     E   TEL ++ KK   E WRLACQ  V
Sbjct: 71  CGGGGSCGQCKVQVNSGG---GEILPTELSHISKKEAKEGWRLACQVNV 116

[Close]

BLAST of IVF0025965 vs. ExPASy Swiss-Prot
Match: Q4QP19 (Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus influenzae (strain 86-028NP) OX=281310 GN=nqrF PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-04
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 111 CGGGGSCGTCIVEILDGKDLLNERTNTELRYLKKK--PESWRLACQ-TIVGNKE 162
           CGGGGSCG CIV++ +G     E   TEL ++ K+   E +RLACQ  + GN E
Sbjct: 73  CGGGGSCGQCIVKVKNGG---GEILPTELSHINKREAKEGYRLACQVNVKGNME 123

[Close]

BLAST of IVF0025965 vs. ExPASy Swiss-Prot
Match: A5UAX6 (Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus influenzae (strain PittEE) OX=374930 GN=nqrF PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-04
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 111 CGGGGSCGTCIVEILDGKDLLNERTNTELRYLKKK--PESWRLACQ-TIVGNKE 162
           CGGGGSCG CIV++ +G     E   TEL ++ K+   E +RLACQ  + GN E
Sbjct: 73  CGGGGSCGQCIVKVKNGG---GEILPTELSHINKREAKEGYRLACQVNVKGNME 123

[Close]

BLAST of IVF0025965 vs. ExPASy TrEMBL
Match: A0A0A0LQ15 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G379280 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.9e-91
Identity = 168/172 (97.67%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           MSSLNVTTAFLSLRQPEFFSDN NRRCLIGNFP+RKPTRPLSVAANSSEPLLSTPAEKPE
Sbjct: 1   MSSLNVTTAFLSLRQPEFFSDNANRRCLIGNFPSRKPTRPLSVAANSSEPLLSTPAEKPE 60

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEFI PKPGSDGSFPVDTVKAISGDKLLRNIMLDNK+ELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKLELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 173
           IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP
Sbjct: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 172

[Close]

BLAST of IVF0025965 vs. ExPASy TrEMBL
Match: A0A1S3BBH4 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488260 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           MSSLNVTTAFLSLRQPEFFSD VNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE
Sbjct: 1   MSSLNVTTAFLSLRQPEFFSDKVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEFI PKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV 167
           IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV
Sbjct: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV 166

[Close]

BLAST of IVF0025965 vs. ExPASy TrEMBL
Match: A0A6J1BTF3 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004660 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.6e-82
Identity = 151/172 (87.79%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           M+SLNVTTA LSLRQPEF S + NRRC+IGNFPNR+PT PLSVAANSSEPLLS+PAEKPE
Sbjct: 1   MASLNVTTASLSLRQPEFRSGSGNRRCIIGNFPNRRPTVPLSVAANSSEPLLSSPAEKPE 60

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEF+ P PGSDGS+PVDT KA+SG+KLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFLGPNPGSDGSYPVDTAKAVSGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 173
           IVEI+DG  LLNERTNTELRYLKKKPE+WRLACQTIVGNKENSGKVVVQRLP
Sbjct: 121 IVEIIDGNGLLNERTNTELRYLKKKPETWRLACQTIVGNKENSGKVVVQRLP 172

[Close]

BLAST of IVF0025965 vs. ExPASy TrEMBL
Match: A0A6J1GHD4 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454210 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.5e-80
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           M+SLNVTT  LSLR  EF S + NRRC IGNF NRKPT PLSVA+NSSEPL+S+P EKPE
Sbjct: 17  MASLNVTTTLLSLRPVEFPSGSANRRCFIGNFRNRKPTLPLSVASNSSEPLISSPPEKPE 76

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEF+ PKPGSDGSFPV+T KAISG+KLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC
Sbjct: 77  IELEFLGPKPGSDGSFPVNTAKAISGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 136

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 173
           IVEI+DGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP
Sbjct: 137 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 188

[Close]

BLAST of IVF0025965 vs. ExPASy TrEMBL
Match: A0A6J1KTR7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496328 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.9e-80
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           M+SLNVTT  LSLR  EF S + NRRC IGNFPNRK T PLSVA+NSSEPL+S+P +KPE
Sbjct: 17  MASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVASNSSEPLISSPPDKPE 76

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEF+ PKPGSDGSFPVDT KAISG+KLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC
Sbjct: 77  IELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 136

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 173
           IVEI+DGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP
Sbjct: 137 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 188

[Close]

BLAST of IVF0025965 vs. NCBI nr
Match: XP_004138751.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 341 bits (874), Expect = 1.26e-117
Identity = 168/172 (97.67%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           MSSLNVTTAFLSLRQPEFFSDN NRRCLIGNFP+RKPTRPLSVAANSSEPLLSTPAEKPE
Sbjct: 1   MSSLNVTTAFLSLRQPEFFSDNANRRCLIGNFPSRKPTRPLSVAANSSEPLLSTPAEKPE 60

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEFI PKPGSDGSFPVDTVKAISGDKLLRNIMLDNK+ELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKLELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 172
           IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP
Sbjct: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 172

[Close]

BLAST of IVF0025965 vs. NCBI nr
Match: XP_011649793.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X1 [Cucumis sativus] >KAE8652187.1 hypothetical protein Csa_022632 [Cucumis sativus])

HSP 1 Score: 334 bits (857), Expect = 6.06e-115
Identity = 168/178 (94.38%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           MSSLNVTTAFLSLRQPEFFSDN NRRCLIGNFP+RKPTRPLSVAANSSEPLLSTPAEKPE
Sbjct: 1   MSSLNVTTAFLSLRQPEFFSDNANRRCLIGNFPSRKPTRPLSVAANSSEPLLSTPAEKPE 60

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEFI PKPGSDGSFPVDTVKAISGDKLLRNIMLDNK+ELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKLELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV------VVQRLP 172
           IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV      VVQRLP
Sbjct: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVDHWLQVVVQRLP 178

[Close]

BLAST of IVF0025965 vs. NCBI nr
Match: XP_008445133.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis melo])

HSP 1 Score: 332 bits (850), Expect = 4.65e-114
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           MSSLNVTTAFLSLRQPEFFSD VNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE
Sbjct: 1   MSSLNVTTAFLSLRQPEFFSDKVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEFI PKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV 166
           IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV
Sbjct: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV 166

[Close]

BLAST of IVF0025965 vs. NCBI nr
Match: XP_038884162.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 328 bits (842), Expect = 9.50e-113
Identity = 161/172 (93.60%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           M+SLNVTTAFLSLRQPEF SDNVNRRCLIGNFPNR+PTRPLS+AANSSEP LSTPAEKPE
Sbjct: 1   MASLNVTTAFLSLRQPEFPSDNVNRRCLIGNFPNRRPTRPLSIAANSSEPFLSTPAEKPE 60

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEFI PKPGSDGSFPVD  KAISG+KLLRNIMLD KIELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 172
           IVEI+DGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP
Sbjct: 121 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLP 172

[Close]

BLAST of IVF0025965 vs. NCBI nr
Match: XP_038884161.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 322 bits (825), Expect = 4.57e-110
Identity = 161/178 (90.45%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MSSLNVTTAFLSLRQPEFFSDNVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60
           M+SLNVTTAFLSLRQPEF SDNVNRRCLIGNFPNR+PTRPLS+AANSSEP LSTPAEKPE
Sbjct: 1   MASLNVTTAFLSLRQPEFPSDNVNRRCLIGNFPNRRPTRPLSIAANSSEPFLSTPAEKPE 60

Query: 61  IELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120
           IELEFI PKPGSDGSFPVD  KAISG+KLLRNIMLD KIELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV------VVQRLP 172
           IVEI+DGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV      VVQRLP
Sbjct: 121 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVDHWLQVVVQRLP 178

[Close]

BLAST of IVF0025965 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 212.2 bits (539), Expect = 3.6e-55
Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 42  SVAANSSEPLLSTPAEKPEIELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIEL 101
           S ++ +S P   +     EIELEF  PKPGSDGS+PVD  KA+SGDKLLR+IM DNKIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 102 YAPYGKLMNCGGGGSCGTCIVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKE 161
           YA YGK+MNCGGGGSCGTCIVEILDG+DLLNERT+TE RYLKKKPESWRLACQTIVGNKE
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKE 158

Query: 162 NSGKVVVQRLP 173
           NSGKVVVQR+P
Sbjct: 159 NSGKVVVQRIP 169

[Close]

BLAST of IVF0025965 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-51
Identity = 96/124 (77.42%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 42  SVAANSSEPLLSTPAEKPEIELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIEL 101
           S ++ +S P   +     EIELEF  PKPGSDGS+PVD  KA+SGDKLLR+IM DNKIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 102 YAPYGKLMNCGGGGSCGTCIVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKE 161
           YA YGK+MNCGGGGSCGTCIVEILDG+DLLNERT+TE RYLKKKPESWRLACQTIVGNKE
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKE 158

Query: 162 NSGK 166
           NSGK
Sbjct: 159 NSGK 162

[Close]

BLAST of IVF0025965 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 4.0e-38
Identity = 75/103 (72.82%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 42  SVAANSSEPLLSTPAEKPEIELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIEL 101
           S ++ +S P   +     EIELEF  PKPGSDGS+PVD  KA+SGDKLLR+IM DNKIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 102 YAPYGKLMNCGGGGSCGTCIVEILDGKDLLNERTNTELRYLKK 145
           YA YGK+MNCGGGGSCGTCIVEILDG+DLLNERT+TE RYLKK
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]

BLAST of IVF0025965 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-30
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 0


Query: 31  NFPNRKPTRPLSVAANSSEPLLSTPAEKPEIELEFIAPKPGSDGSFPVDTVKAISGDKLL 90
           N    K  R +S A  S  P    P E P ++  F+      DG+  V   +A  G K L
Sbjct: 40  NAARTKTVRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQK-L 99

Query: 91  RNIMLDNKIELYAPYGK-LMNCGGGGSCGTCIVEILDGKDLLNERTNTELRYLKKKPESW 150
           R+IMLD+ IELY PY K L NC G G+C TC+VEI++GK+LLN RT+ E   LK+KP++W
Sbjct: 100 RDIMLDSNIELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNW 159

Query: 151 RLACQTIVGNKENSGKVVVQRLPNGRS 177
           RLACQT VGN +++G VV+Q+LP  ++
Sbjct: 160 RLACQTNVGNPDSTGLVVIQQLPEWKA 185

[Close]

BLAST of IVF0025965 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 42  SVAANSSEPLLSTPAEKPEIELEFIAPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIEL 101
           S ++ +S P   +     EIELEF  PKPGSDGS+PVD  KA+SGDKLLR+IM DNKIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 102 YAPYGKLMNCGGGGSCGTCIVE 124
           YA YGK+MNCGGGGSCGTCIVE
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:

BLAST of IVF0025965 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU21	1.9e-29	46.94	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]
A3MYM7	2.8e-04	51.02	Na(+)-translocating NADH-quinone reductase subunit F OS=Actinobacillus pleuropne...	[more]
Q7VNU4	3.7e-04	51.02	Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus ducreyi (str...	[more]
Q4QP19	3.7e-04	48.15	Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus influenzae (...	[more]
A5UAX6	3.7e-04	48.15	Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus influenzae (...	[more]

BLAST of IVF0025965 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ15	1.9e-91	97.67	2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A1S3BBH4	1.1e-88	98.80	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1BTF3	4.6e-82	87.79	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant...	[more]
A0A6J1GHD4	1.5e-80	87.21	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1KTR7	1.9e-80	87.21	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ...	[more]

BLAST of IVF0025965 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138751.1	1.26e-117	97.67	photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X2 [Cucumis ...	[more]
XP_011649793.1	6.06e-115	94.38	photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X1 [Cucumis ...	[more]
XP_008445133.1	4.65e-114	98.80	PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ...	[more]
XP_038884162.1	9.50e-113	93.60	photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X2 [Benincas...	[more]
XP_038884161.1	4.57e-110	90.45	photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X1 [Benincas...	[more]

BLAST of IVF0025965 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32590.1	3.6e-55	77.86	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.3	1.4e-51	77.42	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.4	4.0e-38	72.82	2Fe-2S ferredoxin-like superfamily protein	[more]
AT3G16250.1	1.4e-30	46.94	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.2	1.9e-27	69.51	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 76..176 e-value: 7.7E-18 score: 66.2
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 108..157 e-value: 1.1E-9 score: 38.1
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 47..175
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 47..175
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 83..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025965.1	IVF0025965.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051536	iron-sulfur cluster binding