IVF0025689 (gene) Melon (IVF77) v1

Overview
NameIVF0025689
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 5298307 .. 5298546 (+)
RNA-Seq ExpressionIVF0025689
SyntenyIVF0025689
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTGCTGATTTATATTAAACACCTTCAAATCACTGCAACTTTTTGGCAATCAGTTGGAAGAAGGCAGTTTCAGTATGGTAGCTGCCGCGGTGGCGGTGGCGACTTGATTTTTGGCAATCTCGGTTTTTTGGGAAAATTTTTCTTCAACCAAGGTGGGAGTTTTGGCAAAGATTTCCCGACCGCCGATGGGACGGTGGCGGAGGGAGTGAGTCTGTGGTGGTTCTCCGGCAAGTAA

mRNA sequence

ATGGGGGTGCTGATTTATATTAAACACCTTCAAATCACTGCAACTTTTTGGCAATCAGTTGGAAGAAGGCAGTTTCAGTATGGTAGCTGCCGCGGTGGCGGTGGCGACTTGATTTTTGGCAATCTCGGTTTTTTGGGAAAATTTTTCTTCAACCAAGGTGGGAGTTTTGGCAAAGATTTCCCGACCGCCGATGGGACGGTGGCGGAGGGAGTGAGTCTGTGGTGGTTCTCCGGCAAGTAA

Coding sequence (CDS)

ATGGGGGTGCTGATTTATATTAAACACCTTCAAATCACTGCAACTTTTTGGCAATCAGTTGGAAGAAGGCAGTTTCAGTATGGTAGCTGCCGCGGTGGCGGTGGCGACTTGATTTTTGGCAATCTCGGTTTTTTGGGAAAATTTTTCTTCAACCAAGGTGGGAGTTTTGGCAAAGATTTCCCGACCGCCGATGGGACGGTGGCGGAGGGAGTGAGTCTGTGGTGGTTCTCCGGCAAGTAA

Protein sequence

MGVLIYIKHLQITATFWQSVGRRQFQYGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDFPTADGTVAEGVSLWWFSGK
Homology
[Close]
BLAST of IVF0025689 vs. ExPASy TrEMBL
Match: A0A5A7VBT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G001240 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.6e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MGVLIYIKHLQITATFWQSVGRRQFQYGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDF 60
          MGVLIYIKHLQITATFWQSVGRRQFQYGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDF
Sbjct: 1  MGVLIYIKHLQITATFWQSVGRRQFQYGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDF 60

Query: 61 PTADGTVAEGVSLWWFSGK 80
          PTADGTVAEGVSLWWFSGK
Sbjct: 61 PTADGTVAEGVSLWWFSGK 79

[Close]
BLAST of IVF0025689 vs. NCBI nr
Match: KAA0065663.1 (hypothetical protein E6C27_scaffold90G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (434), Expect = 6.16e-54
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MGVLIYIKHLQITATFWQSVGRRQFQYGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDF 60
          MGVLIYIKHLQITATFWQSVGRRQFQYGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDF
Sbjct: 1  MGVLIYIKHLQITATFWQSVGRRQFQYGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDF 60

Query: 61 PTADGTVAEGVSLWWFSGK 79
          PTADGTVAEGVSLWWFSGK
Sbjct: 61 PTADGTVAEGVSLWWFSGK 79

[Close]
BLAST of IVF0025689 vs. NCBI nr
Match: WP_197429619.1 (hypothetical protein [Myroides odoratus])

HSP 1 Score: 74.3 bits (181), Expect = 1.64e-15
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 32 GGGGDLIFGNLG-FLGKFFFNQGGSFGKDFPTADGTVAEGVSLWWFSG 78
          GGGG LIFG+LG FLGK F NQGG F K+ PTAD TVAEGVSLWW SG
Sbjct: 17 GGGGKLIFGSLGGFLGKIFLNQGGIFCKESPTADETVAEGVSLWWVSG 64

[Close]
BLAST of IVF0025689 vs. NCBI nr
Match: TYK22264.1 (MADS-box protein AGL42-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 48.5 bits (114), Expect = 1.29e-04
Identity = 30/62 (48.39%), Postives = 34/62 (54.84%), Query Frame = 0 

Query: 16  FWQSVGRRQFQ--YGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDFPTADGTVAEGVSL 75
           FW S+GR  F+  Y   R          + +  K FF QGG   KD PTADGTVAEGVSL
Sbjct: 87  FWHSIGRWWFRSVYPWRR-------LRPVDYWAKIFFKQGGILFKDAPTADGTVAEGVSL 141

[Close]
BLAST of IVF0025689 vs. NCBI nr
Match: KAA0033598.1 (MADS-box protein AGL42-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 48.5 bits (114), Expect = 1.56e-04
Identity = 30/62 (48.39%), Postives = 34/62 (54.84%), Query Frame = 0 

Query: 16  FWQSVGRRQFQ--YGSCRGGGGDLIFGNLGFLGKFFFNQGGSFGKDFPTADGTVAEGVSL 75
           FW S+GR  F+  Y   R          + +  K FF QGG   KD PTADGTVAEGVSL
Sbjct: 101 FWHSIGRWWFRSVYPWRR-------LRPVDYWAKIFFKQGGILFKDAPTADGTVAEGVSL 155

The following BLAST results are available for this feature:
BLAST of IVF0025689 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0025689 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VBT92.6e-39100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0025689 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065663.16.16e-54100.00hypothetical protein E6C27_scaffold90G001240 [Cucumis melo var. makuwa][more]
WP_197429619.11.64e-1577.08hypothetical protein [Myroides odoratus][more]
TYK22264.11.29e-0448.39MADS-box protein AGL42-like isoform X1 [Cucumis melo var. makuwa][more]
KAA0033598.11.56e-0448.39MADS-box protein AGL42-like isoform X1 [Cucumis melo var. makuwa][more]
BLAST of IVF0025689 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025689.1IVF0025689.1mRNA