IVF0025413 (gene) Melon (IVF77) v1

Overview
NameIVF0025413
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Locationchr04: 4805656 .. 4805826 (+)
RNA-Seq ExpressionIVF0025413
SyntenyIVF0025413
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAACAGATGTTGGAAACCAGTACTGACTGGATGGGAATCACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAGCCTGAGATCACCTGGACAAAGGAAGAAGATGAAGAATCACTAGAAAACTGGAGGTCTCTAAATGCATTGTTCAATGGTGTGGACTAG

mRNA sequence

ATGGATAACAGATGTTGGAAACCAGTACTGACTGGATGGGAATCACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAGCCTGAGATCACCTGGACAAAGGAAGAAGATGAAGAATCACTAGAAAACTGGAGGTCTCTAAATGCATTGTTCAATGGTGTGGACTAG

Coding sequence (CDS)

ATGGATAACAGATGTTGGAAACCAGTACTGACTGGATGGGAATCACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAGCCTGAGATCACCTGGACAAAGGAAGAAGATGAAGAATCACTAGAAAACTGGAGGTCTCTAAATGCATTGTTCAATGGTGTGGACTAG

Protein sequence

MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD
Homology
BLAST of IVF0025413 vs. ExPASy TrEMBL
Match: A0A5D3D805 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00680 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 57
          MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD
Sbjct: 8  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 63

BLAST of IVF0025413 vs. ExPASy TrEMBL
Match: A0A5A7TDV3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00470 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1   MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 57
           MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD
Sbjct: 90  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 145

BLAST of IVF0025413 vs. ExPASy TrEMBL
Match: A0A5D3CDY8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G00030 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 0

Query: 1  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 57
          MD++CWK VLTG E PSIKDAAGKTTLKPEITWTKE DEESL N R+LNALFNG++
Sbjct: 8  MDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGIN 63

BLAST of IVF0025413 vs. ExPASy TrEMBL
Match: A0A5D3C137 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00680 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-16
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 1  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 57
          +D+R WK V TGWE PS+KD AGKTTLKPEITWTK+EDEES  N ++LNALFNGVD
Sbjct: 8  VDSRYWKSVPTGWEPPSVKDEAGKTTLKPEITWTKKEDEESFGNSKALNALFNGVD 63

BLAST of IVF0025413 vs. ExPASy TrEMBL
Match: A0A5D3DVE7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00330 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.1e-15
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFN 54
          MDN+CWK V   WESPS +DAA K  LKPEITWTKEEDEESLEN R+LNALFN
Sbjct: 21 MDNKCWKVVFIEWESPSTRDAADKIMLKPEITWTKEEDEESLENSRALNALFN 73

BLAST of IVF0025413 vs. NCBI nr
Match: TYK19674.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 4.38e-36
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 56
          MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD
Sbjct: 8  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 63

BLAST of IVF0025413 vs. NCBI nr
Match: KAA0041582.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 4.80e-35
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1   MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 56
           MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD
Sbjct: 90  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 145

BLAST of IVF0025413 vs. NCBI nr
Match: KAA0038855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 2.43e-23
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGV 55
          MD++CWK VLTG E PSIKDAAGKTTLKPEITWTKE DEESL N R+LNALFNG+
Sbjct: 8  MDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGI 62

BLAST of IVF0025413 vs. NCBI nr
Match: KAA0047417.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.43e-21
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 1  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGVD 56
          +D+R WK V TGWE PS+KD AGKTTLKPEITWTK+EDEES  N ++LNALFNGVD
Sbjct: 8  VDSRYWKSVPTGWEPPSVKDEAGKTTLKPEITWTKKEDEESFGNSKALNALFNGVD 63

BLAST of IVF0025413 vs. NCBI nr
Match: TYK27701.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 3.46e-21
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1  MDNRCWKPVLTGWESPSIKDAAGKTTLKPEITWTKEEDEESLENWRSLNALFNGV 55
          MDN+CWK V   WESPS +DAA K  LKPEITWTKEEDEESLEN R+LNALFN +
Sbjct: 21 MDNKCWKVVFIEWESPSTRDAADKIMLKPEITWTKEEDEESLENSRALNALFNDL 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D8051.1e-25100.00Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G... [more]
A0A5A7TDV31.1e-25100.00Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G0... [more]
A0A5D3CDY82.6e-1780.36Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G... [more]
A0A5D3C1372.8e-1675.00Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119... [more]
A0A5D3DVE74.1e-1577.36Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G... [more]
Match NameE-valueIdentityDescription
TYK19674.14.38e-36100.00gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0041582.14.80e-35100.00gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0038855.12.43e-2381.82gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [... [more]
KAA0047417.11.43e-2175.00gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [... [more]
TYK27701.13.46e-2174.55gag-pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025413.1IVF0025413.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane