IVF0025314 (gene) Melon (IVF77) v1

Overview


Name	IVF0025314
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr06: 16629488 .. 16630689 (-)
RNA-Seq Expression	IVF0025314
Synteny	IVF0025314

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAAGCAGGAAAGAGAAACTTCCAAGAATGTATGTACATTCAGCTCGTCGATGCATCGAAATCGACAAGGTAAAGAAAGAAGTGGAAGATTTGTGCCTGGGGTGTCTAGCAGAGGGAATTTTAAGTCTCAGTACAATGGTTCTTCTTTCTCTAAATCGGGATCAAGCGGAGGAGCCCAGAGATCGAGTGGTTCTAGTCATCCTATATCTTCTACAGGAGGTTCTCATATTGCTCGATCAGATAGGGTTGTATCAGAATCTAGCAAGAGTAGTGTATGTTATAACTGTGGTCAGCCAGGACATTATCGTAGAGACTGTCCACATCTGATACCAGGGGGTAATACTATCTTAAAAACTACTTCTCAAACAGTAAGCCAGCAGCCAAGAATCACGATAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAGAAAGGACCAGTGGGTCGTTCTCGCCAGGAAGGGAAGGTTTTTGCAATGACACAACAAGAGGCAGCAGATGCACCAAACGTTGTGACTGGTACGTTATCTATATTTAATAAATCTGCACATGTCCTAATGGATCCTGGTGCAACACATTCTTTTGTCTCTATTATGTTTACAGTTGGGATTGATAAAGAGTTAGAAAGTCTAACTGAGGAACTGTTGATAAGTACACGTATAGGTGATAGTTTTATAGTCAATAGTGTGTACCGGAAATGTAGTATTCTTATTGATGGTGAAACTTTAGAAGTGGATTTGAATCCGTTAAACATTCAGGAGTTTGATGTTATCTTGGGAATGGATTTTCTATCTAATCACTATGCCTCCCTAAATTGTCATCAGAAAGAGATTGTTTTTAAACGTCCAGGGATGAGTGAAATCCTTTTCCGCGGTGATAGAAAAATACTTCTCACCTGTGTGATCTCTGCCTTAAAGGCCAGTAAATTGTTGAGGAAGGGTTGTACGGTTTACCTAGTAAATGTGATAGATACACAGGTTAGTAAGCTGAAGCTTGAGGATATACCAGTGGTAAGAGAATTCCCAGATGTATTTCCTGAAGAGTTATCAGAACTACCGCCTGATAGAGAGATTGAATTCTCAATTGATTTAGTGCCTGGAACTACACCCATTTCACAAGCTCCCTATAGAATGGCACCGATGGAACTGAGAGAGCTAAAATCGCAGTTGCAGGAATTAGTGGATATGGGATTTATCTGA

mRNA sequence

ATGAAAGGAAGCAGGAAAGAGAAACTTCCAAGAATGTATGTACATTCAGCTCGTCGATGCATCGAAATCGACAAGGTAAAGAAAGAATCTCAGTACAATGGTTCTTCTTTCTCTAAATCGGGATCAAGCGGAGGAGCCCAGAGATCGAGTGGTTCTAGTCATCCTATATCTTCTACAGGAGGTTCTCATATTGCTCGATCAGATAGGGTTGTATCAGAATCTAGCAAGAGTAGTGTATGTTATAACTGTGGTCAGCCAGGACATTATCGTAGAGACTGTCCACATCTGATACCAGGGGGTAATACTATCTTAAAAACTACTTCTCAAACAGTAAGCCAGCAGCCAAGAATCACGATAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAGAAAGGACCAGTGGGTCGTTCTCGCCAGGAAGGGAAGGTTTTTGCAATGACACAACAAGAGGCAGCAGATGCACCAAACGTTGTGACTGTTGGGATTGATAAAGAGTTAGAAAGTCTAACTGAGGAACTGTTGATAAGTACACGTATAGGTGATAGTTTTATAGTCAATAGTGTGTACCGGAAATGTAGTATTCTTATTGATGGTGAAACTTTAGAAGTGGATTTGAATCCGTTAAACATTCAGGAGTTTGATGTTATCTTGGGAATGGATTTTCTATCTAATCACTATGCCTCCCTAAATTGTCATCAGAAAGAGATTGTTTTTAAACGTCCAGGGATGAGTGAAATCCTTTTCCGCGGTGATAGAAAAATACTTCTCACCTGTGTGATCTCTGCCTTAAAGGCCAGTAAATTGTTGAGGAAGGGTTGTACGGTTTACCTAGTAAATGTGATAGATACACAGGTTAGTAAGCTGAAGCTTGAGGATATACCAGTGGTAAGAGAATTCCCAGATGTATTTCCTGAAGAGTTATCAGAACTACCGCCTGATAGAGAGATTGAATTCTCAATTGATTTAGTGCCTGGAACTACACCCATTTCACAAGCTCCCTATAGAATGGCACCGATGGAACTGAGAGAGCTAAAATCGCAGTTGCAGGAATTAGTGGATATGGGATTTATCTGA

Coding sequence (CDS)

ATGAAAGGAAGCAGGAAAGAGAAACTTCCAAGAATGTATGTACATTCAGCTCGTCGATGCATCGAAATCGACAAGGTAAAGAAAGAATCTCAGTACAATGGTTCTTCTTTCTCTAAATCGGGATCAAGCGGAGGAGCCCAGAGATCGAGTGGTTCTAGTCATCCTATATCTTCTACAGGAGGTTCTCATATTGCTCGATCAGATAGGGTTGTATCAGAATCTAGCAAGAGTAGTGTATGTTATAACTGTGGTCAGCCAGGACATTATCGTAGAGACTGTCCACATCTGATACCAGGGGGTAATACTATCTTAAAAACTACTTCTCAAACAGTAAGCCAGCAGCCAAGAATCACGATAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAGAAAGGACCAGTGGGTCGTTCTCGCCAGGAAGGGAAGGTTTTTGCAATGACACAACAAGAGGCAGCAGATGCACCAAACGTTGTGACTGTTGGGATTGATAAAGAGTTAGAAAGTCTAACTGAGGAACTGTTGATAAGTACACGTATAGGTGATAGTTTTATAGTCAATAGTGTGTACCGGAAATGTAGTATTCTTATTGATGGTGAAACTTTAGAAGTGGATTTGAATCCGTTAAACATTCAGGAGTTTGATGTTATCTTGGGAATGGATTTTCTATCTAATCACTATGCCTCCCTAAATTGTCATCAGAAAGAGATTGTTTTTAAACGTCCAGGGATGAGTGAAATCCTTTTCCGCGGTGATAGAAAAATACTTCTCACCTGTGTGATCTCTGCCTTAAAGGCCAGTAAATTGTTGAGGAAGGGTTGTACGGTTTACCTAGTAAATGTGATAGATACACAGGTTAGTAAGCTGAAGCTTGAGGATATACCAGTGGTAAGAGAATTCCCAGATGTATTTCCTGAAGAGTTATCAGAACTACCGCCTGATAGAGAGATTGAATTCTCAATTGATTTAGTGCCTGGAACTACACCCATTTCACAAGCTCCCTATAGAATGGCACCGATGGAACTGAGAGAGCTAAAATCGCAGTTGCAGGAATTAGTGGATATGGGATTTATCTGA

Protein sequence

MKGSRKEKLPRMYVHSARRCIEIDKVKKESQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQQEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPLNIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKLLRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTPISQAPYRMAPMELRELKSQLQELVDMGFI

Homology

[Close]

BLAST of IVF0025314 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 633.3 bits (1632), Expect = 6.3e-178
Identity = 328/329 (99.70%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 29  ESQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH 88
           +SQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH
Sbjct: 271 KSQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH 330

Query: 89  YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 148
           YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ
Sbjct: 331 YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 390

Query: 149 QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL 208
           QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL
Sbjct: 391 QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL 450

Query: 209 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL 268
           NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL
Sbjct: 451 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL 510

Query: 269 LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP 328
           LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP
Sbjct: 511 LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP 570

Query: 329 ISQAPYRMAPMELRELKSQLQELVDMGFI 358
           ISQAPYRMAPMELRELKSQLQELVDMGFI
Sbjct: 571 ISQAPYRMAPMELRELKSQLQELVDMGFI 599

[Close]

BLAST of IVF0025314 vs. ExPASy TrEMBL
Match: A0A5D3DS52 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00670 PE=4 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 8.1e-149
Identity = 284/329 (86.32%), Postives = 297/329 (90.27%), Query Frame = 0


Query: 29  ESQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH 88
           +SQY+GSSFSKSG  G AQRSSGS+HPISST GSHIARSDRV+S+S KSSVCYNCGQ GH
Sbjct: 260 KSQYSGSSFSKSGLGGRAQRSSGSNHPISSTAGSHIARSDRVLSKSGKSSVCYNCGQLGH 319

Query: 89  YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 148
           YRRDCPHLIPGGNTILKTTSQTVSQQ R T TSGEGSSG KQ G VGRSRQEGKV AMTQ
Sbjct: 320 YRRDCPHLIPGGNTILKTTSQTVSQQLRTTRTSGEGSSGEKQNGLVGRSRQEGKVCAMTQ 379

Query: 149 QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL 208
           QEAADAPNVVT+G+DKELESLTEELLIST +GDSFIVNSVYRKCSILID ETLEVDL PL
Sbjct: 380 QEAADAPNVVTIGVDKELESLTEELLISTLVGDSFIVNSVYRKCSILIDDETLEVDLIPL 439

Query: 209 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL 268
           NIQEFDVILGMDFLSNHYASLNCH+KEIVFKRP  SEI+F GDRKIL T VIS LKASKL
Sbjct: 440 NIQEFDVILGMDFLSNHYASLNCHRKEIVFKRPRKSEIIFHGDRKILPTYVISTLKASKL 499

Query: 269 LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP 328
           LRKGCT YL NV+DTQ+SKLKLEDIPVVREFPDVFPEELS + PDREIEFSIDLV G  P
Sbjct: 500 LRKGCTAYLANVMDTQISKLKLEDIPVVREFPDVFPEELSGVSPDREIEFSIDLVLGMAP 559

Query: 329 ISQAPYRMAPMELRELKSQLQELVDMGFI 358
           ISQA YRMAPMELRELKSQLQELVD  FI
Sbjct: 560 ISQARYRMAPMELRELKSQLQELVDKSFI 588

[Close]

BLAST of IVF0025314 vs. ExPASy TrEMBL
Match: A0A5A7TL70 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00030 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 5.8e-123
Identity = 252/337 (74.78%), Postives = 259/337 (76.85%), Query Frame = 0


Query: 25  KVKKESQYNGSSFSKS----GSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVC 84
           K ++E+  N  +FS S        GAQRSSGSSHPISSTGGSHIARSDRVVSES KSSVC
Sbjct: 230 KRERETSKNVRTFSSSMHRNRQGRGAQRSSGSSHPISSTGGSHIARSDRVVSESGKSSVC 289

Query: 85  YNCGQPGHYRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQE 144
           YNC QPGHYRRDCPHLIPGGNTILKTTS TVSQQPR T TSGEGSSGGKQKGPVGRSR E
Sbjct: 290 YNCDQPGHYRRDCPHLIPGGNTILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPE 349

Query: 145 GKVFAMTQQEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGET 204
           GKVFAMTQQEAADAPNVV                    IGDSFIVNSVYRKCS+LIDGET
Sbjct: 350 GKVFAMTQQEAADAPNVV--------------------IGDSFIVNSVYRKCSVLIDGET 409

Query: 205 LEVDLNPLNIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVI 264
           LEVDL  LNIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPG                  
Sbjct: 410 LEVDLISLNIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPG------------------ 469

Query: 265 SALKASKLLRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSI 324
                     KGCT YL NVIDTQVSKLKLEDI VVREFPDVFP+ELS LPPDREIEFSI
Sbjct: 470 ----------KGCTAYLANVIDTQVSKLKLEDILVVREFPDVFPKELSGLPPDREIEFSI 518

Query: 325 DLVPGTTPISQAPYRMAPMELRELKSQLQELVDMGFI 358
           DLVPGT PISQAPY MA MELRELKSQ+QELVD GFI
Sbjct: 530 DLVPGTAPISQAPYIMALMELRELKSQMQELVDKGFI 518

[Close]

BLAST of IVF0025314 vs. ExPASy TrEMBL
Match: A0A5D3DI38 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00610 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 5.8e-123
Identity = 252/337 (74.78%), Postives = 259/337 (76.85%), Query Frame = 0


Query: 25  KVKKESQYNGSSFSKS----GSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVC 84
           K ++E+  N  +FS S        GAQRSSGSSHPISSTGGSHIARSDRVVSES KSSVC
Sbjct: 230 KRERETSKNVRTFSSSMHRNRQGRGAQRSSGSSHPISSTGGSHIARSDRVVSESGKSSVC 289

Query: 85  YNCGQPGHYRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQE 144
           YNC QPGHYRRDCPHLIPGGNTILKTTS TVSQQPR T TSGEGSSGGKQKGPVGRSR E
Sbjct: 290 YNCDQPGHYRRDCPHLIPGGNTILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPE 349

Query: 145 GKVFAMTQQEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGET 204
           GKVFAMTQQEAADAPNVV                    IGDSFIVNSVYRKCS+LIDGET
Sbjct: 350 GKVFAMTQQEAADAPNVV--------------------IGDSFIVNSVYRKCSVLIDGET 409

Query: 205 LEVDLNPLNIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVI 264
           LEVDL  LNIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPG                  
Sbjct: 410 LEVDLISLNIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPG------------------ 469

Query: 265 SALKASKLLRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSI 324
                     KGCT YL NVIDTQVSKLKLEDI VVREFPDVFP+ELS LPPDREIEFSI
Sbjct: 470 ----------KGCTAYLANVIDTQVSKLKLEDILVVREFPDVFPKELSGLPPDREIEFSI 518

Query: 325 DLVPGTTPISQAPYRMAPMELRELKSQLQELVDMGFI 358
           DLVPGT PISQAPY MA MELRELKSQ+QELVD GFI
Sbjct: 530 DLVPGTAPISQAPYIMALMELRELKSQMQELVDKGFI 518

[Close]

BLAST of IVF0025314 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 5.4e-121
Identity = 248/329 (75.38%), Postives = 259/329 (78.72%), Query Frame = 0


Query: 29  ESQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH 88
           +SQY+GSSFSKS S GGAQRSS SSH ISSTGGSH+ARS+RVVSES KSSVCYNC Q GH
Sbjct: 249 KSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGH 308

Query: 89  YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 148
           YRRDCPHLIPG NTILKTTSQTV QQ R T TSGEGSSGGKQKG VGRSRQEGKVFAMTQ
Sbjct: 309 YRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQ 368

Query: 149 QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL 208
           QEAADAPN+VT           E   +    GDSFIVNSVYRKCSILIDGETLEVDL PL
Sbjct: 369 QEAADAPNIVT----GTSSIFNESAHVLMDPGDSFIVNSVYRKCSILIDGETLEVDLIPL 428

Query: 209 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL 268
           NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRP  SEI+FRG+RKIL T VISALKASKL
Sbjct: 429 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKL 488

Query: 269 LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP 328
           LRKGCT YL +V+DTQ+SKL LEDIP                            VPGTTP
Sbjct: 489 LRKGCTAYLAHVMDTQISKLNLEDIP----------------------------VPGTTP 545

Query: 329 ISQAPYRMAPMELRELKSQLQELVDMGFI 358
           ISQAPYRM  MELRELKSQLQELVD GFI
Sbjct: 549 ISQAPYRMTSMELRELKSQLQELVDKGFI 545

[Close]

BLAST of IVF0025314 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 638 bits (1646), Expect = 9.17e-226
Identity = 328/329 (99.70%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 29  ESQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH 88
           +SQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH
Sbjct: 271 KSQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH 330

Query: 89  YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 148
           YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ
Sbjct: 331 YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 390

Query: 149 QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL 208
           QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL
Sbjct: 391 QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL 450

Query: 209 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL 268
           NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL
Sbjct: 451 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL 510

Query: 269 LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP 328
           LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP
Sbjct: 511 LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP 570

Query: 329 ISQAPYRMAPMELRELKSQLQELVDMGFI 357
           ISQAPYRMAPMELRELKSQLQELVDMGFI
Sbjct: 571 ISQAPYRMAPMELRELKSQLQELVDMGFI 599

[Close]

BLAST of IVF0025314 vs. NCBI nr
Match: KAA0067055.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK26292.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 541 bits (1395), Expect = 9.91e-188
Identity = 284/329 (86.32%), Postives = 297/329 (90.27%), Query Frame = 0


Query: 29  ESQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH 88
           +SQY+GSSFSKSG  G AQRSSGS+HPISST GSHIARSDRV+S+S KSSVCYNCGQ GH
Sbjct: 260 KSQYSGSSFSKSGLGGRAQRSSGSNHPISSTAGSHIARSDRVLSKSGKSSVCYNCGQLGH 319

Query: 89  YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 148
           YRRDCPHLIPGGNTILKTTSQTVSQQ R T TSGEGSSG KQ G VGRSRQEGKV AMTQ
Sbjct: 320 YRRDCPHLIPGGNTILKTTSQTVSQQLRTTRTSGEGSSGEKQNGLVGRSRQEGKVCAMTQ 379

Query: 149 QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL 208
           QEAADAPNVVT+G+DKELESLTEELLIST +GDSFIVNSVYRKCSILID ETLEVDL PL
Sbjct: 380 QEAADAPNVVTIGVDKELESLTEELLISTLVGDSFIVNSVYRKCSILIDDETLEVDLIPL 439

Query: 209 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL 268
           NIQEFDVILGMDFLSNHYASLNCH+KEIVFKRP  SEI+F GDRKIL T VIS LKASKL
Sbjct: 440 NIQEFDVILGMDFLSNHYASLNCHRKEIVFKRPRKSEIIFHGDRKILPTYVISTLKASKL 499

Query: 269 LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP 328
           LRKGCT YL NV+DTQ+SKLKLEDIPVVREFPDVFPEELS + PDREIEFSIDLV G  P
Sbjct: 500 LRKGCTAYLANVMDTQISKLKLEDIPVVREFPDVFPEELSGVSPDREIEFSIDLVLGMAP 559

Query: 329 ISQAPYRMAPMELRELKSQLQELVDMGFI 357
           ISQA YRMAPMELRELKSQLQELVD  FI
Sbjct: 560 ISQARYRMAPMELRELKSQLQELVDKSFI 588

[Close]

BLAST of IVF0025314 vs. NCBI nr
Match: KAA0042457.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 457 bits (1177), Expect = 1.03e-153
Identity = 246/313 (78.59%), Postives = 249/313 (79.55%), Query Frame = 0


Query: 45  GAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTIL 104
           GAQRSSGSSHPISSTGGSHIARSDRVVSES KSSVCYNC QPGHYRRDCPHLIPGGNTIL
Sbjct: 254 GAQRSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDCPHLIPGGNTIL 313

Query: 105 KTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQQEAADAPNVVTVGIDK 164
           KTTS TVSQQPR T TSGEGSSGGKQKGPVGRSR EGKVFAMTQQEAADAPNVV      
Sbjct: 314 KTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFAMTQQEAADAPNVV------ 373

Query: 165 ELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPLNIQEFDVILGMDFLSN 224
                         IGDSFIVNSVYRKCS+LIDGETLEVDL  LNIQEFDVILGMDFLSN
Sbjct: 374 --------------IGDSFIVNSVYRKCSVLIDGETLEVDLISLNIQEFDVILGMDFLSN 433

Query: 225 HYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKLLRKGCTVYLVNVIDTQ 284
           HYASLNCHQKEIVFKRPG                            KGCT YL NVIDTQ
Sbjct: 434 HYASLNCHQKEIVFKRPG----------------------------KGCTAYLANVIDTQ 493

Query: 285 VSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTPISQAPYRMAPMELREL 344
           VSKLKLEDI VVREFPDVFP+ELS LPPDREIEFSIDLVPGT PISQAPY MA MELREL
Sbjct: 494 VSKLKLEDILVVREFPDVFPKELSGLPPDREIEFSIDLVPGTAPISQAPYIMALMELREL 518

Query: 345 KSQLQELVDMGFI 357
           KSQ+QELVD GFI
Sbjct: 554 KSQMQELVDKGFI 518

[Close]

BLAST of IVF0025314 vs. NCBI nr
Match: TYK22919.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 457 bits (1177), Expect = 1.03e-153
Identity = 246/313 (78.59%), Postives = 249/313 (79.55%), Query Frame = 0


Query: 45  GAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTIL 104
           GAQRSSGSSHPISSTGGSHIARSDRVVSES KSSVCYNC QPGHYRRDCPHLIPGGNTIL
Sbjct: 254 GAQRSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDCPHLIPGGNTIL 313

Query: 105 KTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQQEAADAPNVVTVGIDK 164
           KTTS TVSQQPR T TSGEGSSGGKQKGPVGRSR EGKVFAMTQQEAADAPNVV      
Sbjct: 314 KTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFAMTQQEAADAPNVV------ 373

Query: 165 ELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPLNIQEFDVILGMDFLSN 224
                         IGDSFIVNSVYRKCS+LIDGETLEVDL  LNIQEFDVILGMDFLSN
Sbjct: 374 --------------IGDSFIVNSVYRKCSVLIDGETLEVDLISLNIQEFDVILGMDFLSN 433

Query: 225 HYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKLLRKGCTVYLVNVIDTQ 284
           HYASLNCHQKEIVFKRPG                            KGCT YL NVIDTQ
Sbjct: 434 HYASLNCHQKEIVFKRPG----------------------------KGCTAYLANVIDTQ 493

Query: 285 VSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTPISQAPYRMAPMELREL 344
           VSKLKLEDI VVREFPDVFP+ELS LPPDREIEFSIDLVPGT PISQAPY MA MELREL
Sbjct: 494 VSKLKLEDILVVREFPDVFPKELSGLPPDREIEFSIDLVPGTAPISQAPYIMALMELREL 518

Query: 345 KSQLQELVDMGFI 357
           KSQ+QELVD GFI
Sbjct: 554 KSQMQELVDKGFI 518

[Close]

BLAST of IVF0025314 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 449 bits (1154), Expect = 2.11e-148
Identity = 249/329 (75.68%), Postives = 260/329 (79.03%), Query Frame = 0


Query: 29  ESQYNGSSFSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGH 88
           +SQY+GSSFSKS S GGAQRSS SSH ISSTGGSH+ARS+RVVSES KSSVCYNC Q GH
Sbjct: 249 KSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGH 308

Query: 89  YRRDCPHLIPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 148
           YRRDCPHLIPG NTILKTTSQTV QQ R T TSGEGSSGGKQKG VGRSRQEGKVFAMTQ
Sbjct: 309 YRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQ 368

Query: 149 QEAADAPNVVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPL 208
           QEAADAPN+VT G           L+     GDSFIVNSVYRKCSILIDGETLEVDL PL
Sbjct: 369 QEAADAPNIVT-GTSSIFNESAHVLM---DPGDSFIVNSVYRKCSILIDGETLEVDLIPL 428

Query: 209 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKL 268
           NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRP  SEI+FRG+RKIL T VISALKASKL
Sbjct: 429 NIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKL 488

Query: 269 LRKGCTVYLVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTP 328
           LRKGCT YL +V+DTQ+SKL LEDIPV                            PGTTP
Sbjct: 489 LRKGCTAYLAHVMDTQISKLNLEDIPV----------------------------PGTTP 545

Query: 329 ISQAPYRMAPMELRELKSQLQELVDMGFI 357
           ISQAPYRM  MELRELKSQLQELVD GFI
Sbjct: 549 ISQAPYRMTSMELRELKSQLQELVDKGFI 545

The following BLAST results are available for this feature:

BLAST of IVF0025314 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025314 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZM6	6.3e-178	99.70	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DS52	8.1e-149	86.32	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]
A0A5A7TL70	5.8e-123	74.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5D3DI38	5.8e-123	74.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33...	[more]
A0A5A7T1M0	5.4e-121	75.38	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]

BLAST of IVF0025314 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060484.1	9.17e-226	99.70	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0067055.1	9.91e-188	86.32	reverse transcriptase [Cucumis melo var. makuwa] >TYK26292.1 reverse transcripta...	[more]
KAA0042457.1	1.03e-153	78.59	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK22919.1	1.03e-153	78.59	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0036813.1	2.11e-148	75.68	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025314 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 79..95 e-value: 9.0E-6 score: 35.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 79..95 e-value: 2.1E-8 score: 33.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 80..94 score: 11.680103
None	No IPR available	GENE3D	4.10.60.10		coord: 72..126 e-value: 4.3E-8 score: 35.4
None	No IPR available	PFAM	PF08284	RVP_2	coord: 166..240 e-value: 6.1E-18 score: 64.9
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 308..357 e-value: 8.3E-8 score: 34.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..65
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 171..357
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 171..357
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 155..249 e-value: 6.1E-10 score: 41.0
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 295..357
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 75..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025314.1	IVF0025314.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding