IVF0025103 (gene) Melon (IVF77) v1

Overview


Name	IVF0025103
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr06: 2045860 .. 2046163 (+)
RNA-Seq Expression	IVF0025103
Synteny	IVF0025103

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCAACGGAAGGGGTTTAAGTGCTTTGGAAGTTCCTGATGTTCCACCACTGGTTTGCACGTTTTCCCTTCTAATTTTTTTTTGTTTTGTCCATCTTCTTCGTAAGTGACTTATTAATTGTTTACTTCTGCAGTCCCCATTGAACGATCATCTTGAAGGACTTATAGAGCCAGACAGTGATGAATCTTTGA

mRNA sequence

ATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCAACGGAAGGGGTTTAAGTGCTTTGGAAGTTCCTGATGTTCCACCACTGAGCCAGACAGTGATGAATCTTTGA

Coding sequence (CDS)

ATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCAACGGAAGGGGTTTAAGTGCTTTGGAAGTTCCTGATGTTCCACCACTGAGCCAGACAGTGATGAATCTTTGA

Protein sequence

MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLSQTVMNL

Homology

[Close]

BLAST of IVF0025103 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.5e-22
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 57
           MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHP+GRGLSALEVPDVPPLS
Sbjct: 258 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLS 313

[Close]

BLAST of IVF0025103 vs. ExPASy TrEMBL
Match: A0A5A7VAY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001930 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 57
          MAPNLEE+VKEHKD+SDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS
Sbjct: 1  MAPNLEEKVKEHKDKSDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 56

[Close]

BLAST of IVF0025103 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 57
           MAPNLEEEVKEHKDES++SKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS
Sbjct: 605 MAPNLEEEVKEHKDESNNSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 660

[Close]

BLAST of IVF0025103 vs. ExPASy TrEMBL
Match: A0A5A7UJ48 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold438G00100 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 57
           MAPNLEEEVK+HKDESDSSKSDRHWKRPLKKAKVSGDHP+GRGLSALEVPDVPPLS
Sbjct: 402 MAPNLEEEVKKHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLS 457

[Close]

BLAST of IVF0025103 vs. ExPASy TrEMBL
Match: A0A5D3C4E5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00580 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 57
           MAPNLEEEVK+HKDESDSSKSDRHWKRPLKKAKVSGDHP+GRGLSALEVPDVPPLS
Sbjct: 406 MAPNLEEEVKKHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLS 461

[Close]

BLAST of IVF0025103 vs. NCBI nr
Match: KAA0063075.1 (hypothetical protein E6C27_scaffold468G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 9.81e-27
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 56
          MAPNLEE+VKEHKD+SDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS
Sbjct: 1  MAPNLEEKVKEHKDKSDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 56

[Close]

BLAST of IVF0025103 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 1.90e-26
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 56
           MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHP+GRGLSALEVPDVPPLS
Sbjct: 258 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLS 313

[Close]

BLAST of IVF0025103 vs. NCBI nr
Match: TYK16277.1 (hypothetical protein E5676_scaffold21G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 3.48e-26
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 56
          MA NLEE+V EHKDESDSSKSDRHWKRP KKAKVSGDHPNGRGLSALEVPDVPPLS
Sbjct: 1  MASNLEEKVNEHKDESDSSKSDRHWKRPSKKAKVSGDHPNGRGLSALEVPDVPPLS 56

[Close]

BLAST of IVF0025103 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 5.20e-26
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 56
           MAPNLEEEVKEHKDES++SKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS
Sbjct: 605 MAPNLEEEVKEHKDESNNSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 660

[Close]

BLAST of IVF0025103 vs. NCBI nr
Match: KAA0055892.1 (hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 7.06e-26
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPNGRGLSALEVPDVPPLS 56
           MAPNLEEEVK+HKDESDSSKSDRHWKRPLKKAKVSGDHP+GRGLSALEVPDVPPLS
Sbjct: 402 MAPNLEEEVKKHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLS 457

The following BLAST results are available for this feature:

BLAST of IVF0025103 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025103 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQC9	8.5e-22	98.21	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VAY8	1.9e-21	96.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U8L3	1.9e-21	96.43	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UJ48	2.5e-21	96.43	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C4E5	2.5e-21	96.43	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of IVF0025103 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063075.1	9.81e-27	96.43	hypothetical protein E6C27_scaffold468G001930 [Cucumis melo var. makuwa]	[more]
KAA0031751.1	1.90e-26	98.21	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]
TYK16277.1	3.48e-26	92.86	hypothetical protein E5676_scaffold21G00460 [Cucumis melo var. makuwa]	[more]
KAA0050516.1	5.20e-26	96.43	hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]	[more]
KAA0055892.1	7.06e-26	96.43	hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025103 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025103.1	IVF0025103.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane