IVF0024990 (gene) Melon (IVF77) v1

Overview


Name	IVF0024990
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 20
Location	chr05: 26613476 .. 26615724 (-)
RNA-Seq Expression	IVF0024990
Synteny	IVF0024990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCTAAAATGGTAAAACCCTCCAGAGACCCCGATCAAAATACTCCTCGTCCCTTCCCTTTGATTCTTGATTTAGTTTCACCGTTTTCCTTTGCCCAGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGATTTCGCAATGTGTTGAGAGTATCCATGGCGTTAAAGGGGGCAAGTGGAAAGCTACTCTCACTTTCTACAAACCCATCTTGCGAGGTAATCGCGCTCTTTGTCTTCAGTCCTTCAGGATTTGATTACCTAAATGAATCTTAAATCTGTCAACAGACCAGAACTCGCCGGCGGCCGAATTCCCCCGCGACTTTCTCGGAATTTCGCTGCCGGAGCAGCCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATCGTCTTGGAAGCTGATTTTACGATTCAGGCTATAATGGAGAAGCTGCAGTCGTACAAATTGCGCGTTGCTCTCAATTTCGAGGTTGGCCACTCAGCTTCTCTATCTTTGATGTACTGCATTTTTCCCATGTCCTAGAATTCAAGTTTAAAGTTGATTTTTGTGGCTTTCTAGTCTCTACTCGCTTTCCATTTTTGTTTGTAGTCTGTGAGGTGGATAAATCTTTGATTACAGACCGTTCACATTATTGGTTTTTTAGGGGTTTCAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGGTAAGGCTCATTTCATCATTTCATGGGAACTATGCTTTTGTGTGATTGCATGTTCTTCTGGTTGTTTGTTTTATTTGTGCTTTTTTATGTCTTTTGCTTTATCTGAGCGAGCAGTTTCTTTTCCCCTGGCCTGTTTCAACACAATGTTTGGCGTCTGTGTTCAAGTATGGATATAATTAAATTTTGAATGTTATTCAACTCGGTATTAAAGCATGAAATCTTTTGTTCCAATTTTTGAATGTCATTTATTCTCCAAATTAATATTGATTTTCAGTGTTTGAACTTCTACAATATTTCACACCTACTAGCGGGATTGTTGAAGTATTGATAAGACGGTGATTAACTTGGTAAGTAGAAGAAAAAAGTCGGTCATCACATAGAAGTACAATTCTGTGAATAACTTATCAGTGAGCTTTGAGGCCAGGGATCTTCTGTTGAGAAGTAATGAGAACCGATTAGGATATCTTTGCAAAAGCCCGTGTAAAATTAGTTATGGAAGTCATTATTGTGAATCTGCGATCTTCACATCTGTTTGTATTTCATACTGTCATTGTTCGACATGAATCAAAGTGTTTTGAGTAAATTCCTCTGAAAGAGTTGCTTAGTTTGGAAAGTGTATTCCAGTTCACTTGAATGCTTGAATGCTTGAATGCTTGATGAAACTCTGTAGTAGTCTTTGCTTAATCGGATGATGATTTCGAATGTCTGTCCTTCACTCTCCTTTTTCCCCTCCAAACTATTCTTGAAAAAATGCAGTACCATGTTCTATATTTTATTGTCAAGTCCAACTAGTATATGTTTTCGACTATCATGAAATCGTAGAAACTAAGGTAGTAGGGGATGCATGTCTTTGTTCCATGTTGGTTAGATAGAGACGACTAATACGGTAGTTAAGTGGTTTGGCTCTCCCACACTGTAGCCGATTTTTGAAGTGTTCTCCAAGGTGCTTAAGTAACTCACAGAAACCCCTCTATGATGAATAGCTTGCACTTCTCTAGCAAATCTTGATTCGGTTTTGTAGTTGTGTTTAATTTGTTGCGACGAATACCCTATAGAAAGTATGTGGGATTTAACTAGAAACTAAAATCTGTATGTCAAATGTGGCAATGTTATATGTCTTTTGGGTGTAAATATGAAAATTGCTCTTTGTTGGTGTTCCAATTAAACATTTTGAATAAATGTTGAGAGAGCGTTTACCATTCCCGTGATAGATATTGAATGGTATACTAAAACCTGGATATTGCAGATCGAGTATCTTCCAATTTCTTCAATGGAGAAATCAAGACAGATAATGGATGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAATCAAACTTTGCAGAATATGGACTATCGGATTTCTATACTCCTCAACACACAGCAGTTCAATATGGCAACGTCATGGCTCAACTAATCGCTACTGTGCAAGCAGTTCAATCCGCTAGAAATTAG

mRNA sequence

ATGCCGCTAAAATGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGATTTCGCAATGTGTTGAGAGTATCCATGGCGTTAAAGGGGGCAAGTGGAAAGCTACTCTCACTTTCTACAAACCCATCTTGCGAGACCAGAACTCGCCGGCGGCCGAATTCCCCCGCGACTTTCTCGGAATTTCGCTGCCGGAGCAGCCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATCGTCTTGGAAGCTGATTTTACGATTCAGGCTATAATGGAGAAGCTGCAGTCGTACAAATTGCGCGTTGCTCTCAATTTCGAGGGGTTTCAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGATCGAGTATCTTCCAATTTCTTCAATGGAGAAATCAAGACAGATAATGGATGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAATCAAACTTTGCAGAATATGGACTATCGGATTTCTATACTCCTCAACACACAGCAGTTCAATATGGCAACGTCATGGCTCAACTAATCGCTACTGTGCAAGCAGTTCAATCCGCTAGAAATTAG

Coding sequence (CDS)

ATGCCGCTAAAATGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGATTTCGCAATGTGTTGAGAGTATCCATGGCGTTAAAGGGGGCAAGTGGAAAGCTACTCTCACTTTCTACAAACCCATCTTGCGAGACCAGAACTCGCCGGCGGCCGAATTCCCCCGCGACTTTCTCGGAATTTCGCTGCCGGAGCAGCCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATCGTCTTGGAAGCTGATTTTACGATTCAGGCTATAATGGAGAAGCTGCAGTCGTACAAATTGCGCGTTGCTCTCAATTTCGAGGGGTTTCAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGATCGAGTATCTTCCAATTTCTTCAATGGAGAAATCAAGACAGATAATGGATGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAATCAAACTTTGCAGAATATGGACTATCGGATTTCTATACTCCTCAACACACAGCAGTTCAATATGGCAACGTCATGGCTCAACTAATCGCTACTGTGCAAGCAGTTCAATCCGCTAGAAATTAG

Protein sequence

MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFMHIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN

Homology

[Close]

BLAST of IVF0024990 vs. ExPASy Swiss-Prot
Match: Q6NPF4 (Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana OX=3702 GN=MED20A PE=1 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.5e-91
Identity = 159/219 (72.60%), Postives = 193/219 (88.13%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MP+KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +YKP+L+DQ +   E
Sbjct: 1   MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQ-ANQLE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISL +QPNKYY IIR QRIVLEAD +IQ IMEKLQSYK +VAL F+GFQYQLG
Sbjct: 61  FPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DF+LRVGKVVP +SEN+RGIVME+EYLPISSMEK++++M+EF ++W EA++K SLPG+F+
Sbjct: 121 DFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFV 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQ 220
           +I+ NF E+GL D YTPQHTAV+Y  VMA +IATVQAV+
Sbjct: 181 NIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVR 218

[Close]

BLAST of IVF0024990 vs. ExPASy Swiss-Prot
Match: Q9M0S0 (Mediator of RNA polymerase II transcription subunit 20b OS=Arabidopsis thaliana OX=3702 GN=MED20B PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-81
Identity = 139/217 (64.06%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MP+KW+LHWQPN GST +SQILNE++Q +ES++GVK G WKATL +YKP+L+DQ +  AE
Sbjct: 1   MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQ-ANQAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPR+F+GISLPE+P+KYY +IR QRIV+EAD +IQ IME LQSYK +++  FEG +YQLG
Sbjct: 61  FPREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DF+LRVGKVVP ++E +RG+VME+EYLPISSM  ++++M+EF ++WQEAMSK SLPG+F+
Sbjct: 121 DFRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFV 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQA 218
           + E NF ++GL D YTPQHTAV Y   MA L+A +QA
Sbjct: 181 NKELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQA 216

[Close]

BLAST of IVF0024990 vs. ExPASy Swiss-Prot
Match: Q54FL3 (Putative mediator of RNA polymerase II transcription subunit 20 OS=Dictyostelium discoideum OX=44689 GN=med20 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-09
Identity = 53/193 (27.46%), Postives = 94/193 (48.70%), Query Frame = 0


Query: 22  LNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAEFPRDFLGISLPEQPNKYYLII 81
           L E+++ +E + G+K        + Y   + D ++     PR+F  +   E+P K + + 
Sbjct: 13  LPEMTKRIEFLGGIKVSTGTINCSLYLERVPDGSN---LIPREFHLLLYDEKPKKCFTVC 72

Query: 82  RGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIV 141
           R    ++E D  + +I+EK  SYK R        +Y+LGDF +RVG +V      +RGI+
Sbjct: 73  RD--TIVETDREMVSILEKTNSYKKRQTTEALISKYELGDFIIRVGPIVFRT--EIRGIL 132

Query: 142 MEIEY----LPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFMHIESNF---AEYGLSDF 201
           +E+EY     P++S     +++ EF +         +L      I+++F   A   L   
Sbjct: 133 VEVEYTACSTPVTSPFNCTKLLSEFIN--------GNLGPFPEPIQTSFDFSAYPTLPKS 190

Query: 202 YTPQHTAVQYGNV 208
           Y+  HT+ QY N+
Sbjct: 193 YSDLHTSYQYVNL 190

[Close]

BLAST of IVF0024990 vs. ExPASy TrEMBL
Match: A0A5D3CH02 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo var. makuwa OX=1194695 GN=MED20 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 7.3e-124
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE
Sbjct: 49  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 108

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG
Sbjct: 109 FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 168

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM
Sbjct: 169 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 228

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 224
           HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN
Sbjct: 229 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 271

[Close]

BLAST of IVF0024990 vs. ExPASy TrEMBL
Match: A0A1S3CAW6 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo OX=3656 GN=LOC103498750 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 7.3e-124
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 224
           HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN
Sbjct: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 223

[Close]

BLAST of IVF0024990 vs. ExPASy TrEMBL
Match: A0A0A0LHQ1 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis sativus OX=3659 GN=MED20 PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.2e-122
Identity = 218/223 (97.76%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQ+M+EFFDVWQEAMSKSSLPGRFM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFM 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 224
           HIESNFAEYGLSD+YT QHTAVQYGNVMAQLIATVQAVQSARN
Sbjct: 181 HIESNFAEYGLSDYYTSQHTAVQYGNVMAQLIATVQAVQSARN 223

[Close]

BLAST of IVF0024990 vs. ExPASy TrEMBL
Match: A0A1S3CAU2 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo OX=3656 GN=LOC103498750 PE=3 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 2.9e-120
Identity = 219/223 (98.21%), Postives = 220/223 (98.65%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE   YQLG
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE---YQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 224
           HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN
Sbjct: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 220

[Close]

BLAST of IVF0024990 vs. ExPASy TrEMBL
Match: A0A6J1KEU1 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucurbita maxima OX=3661 GN=LOC111493666 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 8.7e-117
Identity = 209/223 (93.72%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRD N  A E
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDTNIAAGE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG
Sbjct: 61  FPRDFLGISVPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKS+Q+M+EFF+VWQEAMSKSSLPGRFM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSKQVMEEFFEVWQEAMSKSSLPGRFM 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 224
           HIE NFAEYGLSD+YT QHTAVQY NVMAQLIATVQAVQSARN
Sbjct: 181 HIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQSARN 223

[Close]

BLAST of IVF0024990 vs. NCBI nr
Match: XP_008459711.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis melo])

HSP 1 Score: 451 bits (1159), Expect = 8.00e-160
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 223
           HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN
Sbjct: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 223

[Close]

BLAST of IVF0024990 vs. NCBI nr
Match: KAA0061469.1 (mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis melo var. makuwa] >TYK10805.1 mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 451 bits (1159), Expect = 4.56e-159
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE
Sbjct: 49  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 108

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG
Sbjct: 109 FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 168

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM
Sbjct: 169 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 228

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 223
           HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN
Sbjct: 229 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 271

[Close]

BLAST of IVF0024990 vs. NCBI nr
Match: XP_004141069.1 (mediator of RNA polymerase II transcription subunit 20a [Cucumis sativus] >KGN60509.1 hypothetical protein Csa_019466 [Cucumis sativus])

HSP 1 Score: 444 bits (1143), Expect = 2.20e-157
Identity = 218/223 (97.76%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQ+M+EFFDVWQEAMSKSSLPGRFM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFM 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 223
           HIESNFAEYGLSD+YT QHTAVQYGNVMAQLIATVQAVQSARN
Sbjct: 181 HIESNFAEYGLSDYYTSQHTAVQYGNVMAQLIATVQAVQSARN 223

[Close]

BLAST of IVF0024990 vs. NCBI nr
Match: XP_008459719.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform X2 [Cucumis melo])

HSP 1 Score: 439 bits (1128), Expect = 3.83e-155
Identity = 219/223 (98.21%), Postives = 220/223 (98.65%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE   YQLG
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE---YQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 223
           HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN
Sbjct: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 220

[Close]

BLAST of IVF0024990 vs. NCBI nr
Match: XP_038889134.1 (mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Benincasa hispida])

HSP 1 Score: 435 bits (1118), Expect = 1.43e-153
Identity = 213/223 (95.52%), Postives = 219/223 (98.21%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNE+SQCVESIHGVKGGKWKATLTFYKPILRDQN PAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSR++M+EFF+VWQEAMSKSSLPGRFM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRKVMEEFFEVWQEAMSKSSLPGRFM 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 223
           HIE NFAEYGLSD+YT QHTAVQY NVMAQLIATVQAVQSARN
Sbjct: 181 HIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQSARN 223

[Close]

BLAST of IVF0024990 vs. TAIR 10
Match: AT2G28230.1 (TATA-binding related factor (TRF) of subunit 20 of Mediator complex )

HSP 1 Score: 335.9 bits (860), Expect = 2.5e-92
Identity = 159/219 (72.60%), Postives = 193/219 (88.13%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MP+KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +YKP+L+DQ +   E
Sbjct: 1   MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQ-ANQLE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPRDFLGISL +QPNKYY IIR QRIVLEAD +IQ IMEKLQSYK +VAL F+GFQYQLG
Sbjct: 61  FPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DF+LRVGKVVP +SEN+RGIVME+EYLPISSMEK++++M+EF ++W EA++K SLPG+F+
Sbjct: 121 DFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFV 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQ 220
           +I+ NF E+GL D YTPQHTAV+Y  VMA +IATVQAV+
Sbjct: 181 NIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVR 218

[Close]

BLAST of IVF0024990 vs. TAIR 10
Match: AT4G09070.1 (TATA-binding related factor (TRF) of subunit 20 of Mediator complex )

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-82
Identity = 139/217 (64.06%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEISQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
           MP+KW+LHWQPN GST +SQILNE++Q +ES++GVK G WKATL +YKP+L+DQ +  AE
Sbjct: 1   MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQ-ANQAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
           FPR+F+GISLPE+P+KYY +IR QRIV+EAD +IQ IME LQSYK +++  FEG +YQLG
Sbjct: 61  FPREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLG 120

Query: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFM 180
           DF+LRVGKVVP ++E +RG+VME+EYLPISSM  ++++M+EF ++WQEAMSK SLPG+F+
Sbjct: 121 DFRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFV 180

Query: 181 HIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQA 218
           + E NF ++GL D YTPQHTAV Y   MA L+A +QA
Sbjct: 181 NKELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQA 216

[Close]

BLAST of IVF0024990 vs. TAIR 10
Match: AT2G28020.1 (BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT2G28230.1); Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 152 MEKSRQIMDEFFDVWQEAMSKSSLPGRFMHIESNFAEYGLSDFYTPQHTAVQ-YGNVMAQ 211
           ME +R++M+EF ++W EA++K SLPG+F++ + NF E+GL D YTPQHTAV+ Y  VMA 
Sbjct: 1   MEIARKVMEEFLEIWNEALAKRSLPGKFVNKDLNFGEFGLGDNYTPQHTAVRNYALVMAH 60

Query: 212 LIATVQAV 219
           +IATVQAV
Sbjct: 61  MIATVQAV 68

The following BLAST results are available for this feature:

BLAST of IVF0024990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPF4	3.5e-91	72.60	Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana ...	[more]
Q9M0S0	1.9e-81	64.06	Mediator of RNA polymerase II transcription subunit 20b OS=Arabidopsis thaliana ...	[more]
Q54FL3	5.8e-09	27.46	Putative mediator of RNA polymerase II transcription subunit 20 OS=Dictyostelium...	[more]

BLAST of IVF0024990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CH02	7.3e-124	99.55	Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo var. maku...	[more]
A0A1S3CAW6	7.3e-124	99.55	Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0LHQ1	5.2e-122	97.76	Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis sativus OX=365...	[more]
A0A1S3CAU2	2.9e-120	98.21	Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1KEU1	8.7e-117	93.72	Mediator of RNA polymerase II transcription subunit 20 OS=Cucurbita maxima OX=36...	[more]

BLAST of IVF0024990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459711.1	8.00e-160	99.55	PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform ...	[more]
KAA0061469.1	4.56e-159	99.55	mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis...	[more]
XP_004141069.1	2.20e-157	97.76	mediator of RNA polymerase II transcription subunit 20a [Cucumis sativus] >KGN60...	[more]
XP_008459719.1	3.83e-155	98.21	PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform ...	[more]
XP_038889134.1	1.43e-153	95.52	mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Beninca...	[more]

BLAST of IVF0024990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28230.1	2.5e-92	72.60	TATA-binding related factor (TRF) of subunit 20 of Mediator complex	[more]
AT4G09070.1	1.4e-82	64.06	TATA-binding related factor (TRF) of subunit 20 of Mediator complex	[more]
AT2G28020.1	1.3e-16	58.82	BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013921	Mediator complex, subunit Med20	PFAM	PF08612	Med20	coord: 1..208 e-value: 1.1E-42 score: 145.9
IPR013921	Mediator complex, subunit Med20	PANTHER	PTHR12465	UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49	coord: 6..217
None	No IPR available	PANTHER	PTHR12465:SF0	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20	coord: 6..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024990.2	IVF0024990.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity