IVF0024913 (gene) Melon (IVF77) v1

Overview


Name	IVF0024913
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr03: 11736352 .. 11736615 (-)
RNA-Seq Expression	IVF0024913
Synteny	IVF0024913

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAGTAGAAGTCGCTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAACTACCTCCGAACAAGCCTACCGCGAGACCCGAGAACTCAAGCGTCAACTCTGTACTACCTTCAAAGGAGAAAAGTAGGGCCATATCTTATTCAAATATTCAAACTCTAATCGGATGTAGCAACATTAGGAAATCCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCGCTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAACTACCTCCGAACAAGCCTACCGCGAGACCCGAGAACTCAAGCGTCAACTCTGTACTACCTTCAAAGGAGAAAAGTAGGGCCATATCTTATTCAAATATTCAAACTCTAATCGGATGTAGCAACATTAGGAAATCCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCGCTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAACTACCTCCGAACAAGCCTACCGCGAGACCCGAGAACTCAAGCGTCAACTCTGTACTACCTTCAAAGGAGAAAAGTAGGGCCATATCTTATTCAAATATTCAAACTCTAATCGGATGTAGCAACATTAGGAAATCCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAG

Protein sequence

MTLVEVALKGPKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSIENNPYRRLTVTRSGGRKA

Homology

[Close]

BLAST of IVF0024913 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.8e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSI 69
           G KRHPLTYPRKGKLPPNKPTARPENSSVNSVLPS+EKSRAISYSNIQTLIGCSNIR+ I
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 77
           E NP RR
Sbjct: 136 E-NPERR 141

[Close]

BLAST of IVF0024913 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSIENNPYRRLT 78
           P++ KL P KP A PEN SVNSVLPS+EKSRAISYSNIQTLIGCSNIR+ IENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0024913 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSIENNPYRRLT 78
           P++ KL P KP A PEN SVNSVLPS+EKSRAISYSNIQTLIGCSNIR+ IENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0024913 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSIENNPYRRLT 78
           P++ KL P +PTARPEN SV S LPSKEKSRAI+YSNIQ LIGCSNIR+ IENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0024913 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.6e-20
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSIENNPYRRLT 78
           P++ KL P +P A PEN SVNS LPS+EKSR ISYSNIQTLIGCSNIR+ IENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0024913 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 2.47e-29
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSI 69
           G KRHPLTYPRKGKLPPNKPTARPENSSVNSVLPS+EKSRAISYSNIQTLIGCSNIR+ I
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 76
           EN P RR
Sbjct: 136 EN-PERR 141

[Close]

BLAST of IVF0024913 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 3.13e-28
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSIENNPYRRLT 78
           P++ KL P KP A PEN SVNSVLPS+EKSRAISYSNIQTLIGCSNIR+ IENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0024913 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 2.07e-27
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSIENNPYRRLT 78
           P++ KL P +PTARPEN SV S LPSKEKSRAI+YSNIQ LIGCSNIR+ IENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0024913 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 6.41e-27
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSIENNPYRRLT 78
           P++ KL P KP A PEN SVNSVLPS+EKSRAISYSNIQTLIGCSNIR+ IENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0024913 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 8.15e-26
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSKEKSRAISYSNIQTLIGCSNIRKSIENNPYRRLT 78
           P++ KL P +P A PEN SVNS LPS+EKSR ISYSNIQTLIGCSNIR+ IENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

The following BLAST results are available for this feature:

BLAST of IVF0024913 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024913 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMJ9	4.8e-23	91.04	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TNL7	1.6e-21	84.06	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ULW2	1.6e-21	84.06	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UGC7	1.0e-20	81.16	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SQ80	8.6e-20	78.26	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0024913 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057143.1	2.47e-29	91.04	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054655.1	3.13e-28	84.06	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054224.1	2.07e-27	81.16	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0043181.1	6.41e-27	84.06	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0032698.1	8.15e-26	78.26	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0024913 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024913.1	IVF0024913.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane