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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCCTCTCCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAATTAGCAGTAGCCTTGCTGCTGTGCAGCGGCCCAATGGCGGCGGTGGTGGAGGAGGTGGAGGAGGGTCTGGTAGCGCATCGAGTAGCGGCGGAGGTTCAGCTTCTGGGTCTGGGTCTGGGTCCGGATCCGGTAGTGGCGGTGGGTCCGGTTTCAATGGAGTTTCTGCTGATCAGGCCAGTGGGTTGAACCACAGGAAGGTTTCTCCTTGA mRNA sequence ATGGCCTCTCCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAATTAGCAGTAGCCTTGCTGCTGTGCAGCGGCCCAATGGCGGCGGTGGTGGAGGAGGTGGAGGAGGGTCTGGTAGCGCATCGAGTAGCGGCGGAGGTTCAGCTTCTGGGTCTGGGTCTGGGTCCGGATCCGGTAGTGGCGGTGGGTCCGGTTTCAATGGAGTTTCTGCTGATCAGGCCAGTGGGTTGAACCACAGGAAGGTTTCTCCTTGA Coding sequence (CDS) ATGGCCTCTCCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAATTAGCAGTAGCCTTGCTGCTGTGCAGCGGCCCAATGGCGGCGGTGGTGGAGGAGGTGGAGGAGGGTCTGGTAGCGCATCGAGTAGCGGCGGAGGTTCAGCTTCTGGGTCTGGGTCTGGGTCCGGATCCGGTAGTGGCGGTGGGTCCGGTTTCAATGGAGTTTCTGCTGATCAGGCCAGTGGGTTGAACCACAGGAAGGTTTCTCCTTGA Protein sequence MASPSKLFLCFCFFIFLIISSSLAAVQRPNGGGGGGGGGGSGSASSSGGGSASGSGSGSGSGSGGGSGFNGVSADQASGLNHRKVSP
Homology
BLAST of IVF0024894 vs. ExPASy TrEMBL
Match: A0A0A0LBI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 8.9e-17 Identity = 70/88 (79.55%), Postives = 73/88 (82.95%), Query Frame = 0
Query: 1 MASPSKLFLCFCFFIFLIISSSLAAVQRPN-GGGGGGGGGGSGSASSSGGGSASGSGSGS 60
MAS SKLFLCFCFFIFLI SS+LAAVQRPN GGGGGGGGGGSGS SSSG GSASGSGSGS
Sbjct: 1 MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60
Query: 61 GSGSGGGSGFNGVSADQASGLNHRKVSP 88
GSG G G G+S+DQA G HRK SP
Sbjct: 61 GSGGGSGDSV-GISSDQAGGSTHRKASP 87
BLAST of IVF0024894 vs. NCBI nr
Match: KGN59380.1 (hypothetical protein Csa_000800 [Cucumis sativus]) HSP 1 Score: 94.0 bits (232), Expect = 6.91e-23 Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0
Query: 1 MASPSKLFLCFCFFIFLIISSSLAAVQRPNGGGGGGGGGG-SGSASSSGGGSASGSGSGS 60
MAS SKLFLCFCFFIFLI SS+LAAVQRPNGGGGGGGGGG SGS SSSG GSASGSGS
Sbjct: 1 MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGS-- 60
Query: 61 GSGSGGGSGFN-GVSADQASGLNHRKVSP 87
GSGSGGGSG + G+S+DQA G HRK SP
Sbjct: 61 GSGSGGGSGDSVGISSDQAGGSTHRKASP 87
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LBI4 | 8.9e-17 | 79.55 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN59380.1 | 6.91e-23 | 80.90 | hypothetical protein Csa_000800 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 29..87 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 40..87 |
Relationships
The following mRNA feature(s) are a part of this gene:
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