IVF0024875 (gene) Melon (IVF77) v1

Overview
NameIVF0024875
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr01: 2284492 .. 2287226 (-)
RNA-Seq ExpressionIVF0024875
SyntenyIVF0024875
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACCTCAAATCGTGCACCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTCGAATGTTTAATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAATGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTTAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATTGTTGCGGAGAAGGAATTATTCGATAATTGGGTTAGGGTATGGAATATAATTTAAACGTCACACAACGTTAACAATTTACATTTAGTAAACAATTTTTAAATTAGTACTCATACGTCATATTTTTTTTCTGCCCGCAGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGGGATAGGGCGACCTGTCGGTTCGCTGAGACATTTGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTAAAGCGATACATGTGGCGCTCGAGCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAGTTTCTGTTTGTAGTGACCTGTGTTGCTTATTATTTCGTTACGTATTTTTCTGTATCATGTATTCGATGGTTTATGCATTTTGTATTGTCAAGAACTTCTTTTGTTCATTCCTAATGTTTATTTTAAATGAAAGAAACTAGTCAGAATTTTCGAAAAGCGTTATAACGGCTATTTATATAGGTTTAAAATTGGATGACTTCGCTATCGGCCATTCGAAATATTGAATAATTTTTTTATCTTTATAAGAAATTAATTGTAATAAATTTATCACAATATGTTCAGAAATTAATTTTAATTTGGCCAATGTATATATTAATTTAATAACATTACACATACAACAAATAAAATAGGAGAATAATACGGATTCGAGGATTTCGTAAAAAAATATGCAATAATTTTTGTATGATATTTACAATTGAATTTAAAAATATTATACAACATAAAAAATTAATTAACCCACCCCATTTAACAATTTTCCCAAATAAAATTTATCGCAAAATCCACATAAACCTACCCACTTAACCCTTCCCCCAAACACATTTTATCATAAAATCCCCATTAAACTACCCACCTAACCCTTCCCCCAAACACATCTTATCATAAAATCCCCATTAATCCTCCCCACCTAACCCTTCCCCCAAACACATTTTATCATAAAATCCCCATTAACTCTTCCCACCTAACCCTTCCCCCAAACACATATTATCATAAAACTACCTTTTTAAACCCTTCCCCCAAACAAGGGTTATGATAAAACTAGGTTTAACTTAACACTAGTTTTATCTTAACACTAACCCTTCCCTAAATCAACCCTTCCCCCAAACGCACCCTAAAATTTTCGAAATGGAGTAGGAACTTCAATTTTATTGTTAAAATAGAACACTTGACCTCTGTTCAATAACCGTTATCGATTGATTTGACATTTTAAAAAGATATATTGACACAAAATTGAAAGCTTGTACTCCTATTATACGTAAAAATCCACTTTAAGTCTAACAAATAAGCTATTCTTTTATACGTCAAAGATTACTATGCATATATTTATTAAACATTTTCAAAATTTAGGGAATCATTTTATACAAAATCAAAAGAACACAGTAACGTAGTCATAATTTTACGTTTAGGGTACTATTTTATATAAAATTAGACATTTAAATCACATGCTTTTAATTTTGTTTTTATATATGGTCTCGATACTTTAAAATGTGTATAATATATACTTTTAAATTTTTTGAATTGATTTTTATAGTTAATTGATATTCAATCGGTCTTATATATATTTGTCATATCATAGATATGTATGATTTTTAGTTGAAGGAATTTTTAAAACCATCTCACAAAACTCGAGAACTAAAAAGGTCAATTTTCAAAACTTATAAACTAAAAAGACCATATTTTGATAGAAAAATTAACTAAATGATTGTGTTTAATATTTCATATATTTTATTTTATTGAATTTTAATCCAAATGATCACTTAAAATATTTTGATACTGAAATTTATAAATAATACAACTAGTTGTACCCATGTATGTAATTATAAATTTTTAATATCATATCATTTATAGTACATAAGATATTATATTTTTAAATGTCTTTTAACTTTATTTAACACAATTCTCTACATTTAAAATTTTAGATTTTGAAATCGAGATACAATAAAAACATAACAATATAGCTTTCAAAATTTACACTATTTGAGTCACAGAATTTGA

mRNA sequence

ATGTCAACCTCAAATCGTGCACCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTCGAATGTTTAATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAATGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTTAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATTGTTGCGGAGAAGGAATTATTCGATAATTGGGTTAGGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGGGATAGGGCGACCTGTCGGTTCGCTGAGACATTTGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTAAAGCGATACATGTGGCGCTCGAGCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATACTTTCAAAATTTACACTATTTGAGTCACAGAATTTGA

Coding sequence (CDS)

ATGTCAACCTCAAATCGTGCACCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTCGAATGTTTAATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAATGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTTAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATTGTTGCGGAGAAGGAATTATTCGATAATTGGGTTAGGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGGGATAGGGCGACCTGTCGGTTCGCTGAGACATTTGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTAAAGCGATACATGTGGCGCTCGAGCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATACTTTCAAAATTTACACTATTTGAGTCACAGAATTTGA

Protein sequence

MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIERYFQNLHYLSHRI
Homology
[Close]
BLAST of IVF0024875 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 622.1 bits (1603), Expect = 1.3e-174
Identity = 303/306 (99.02%), Postives = 305/306 (99.67%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFEL+AIHVAL+QTNEQLREIAQWPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIER 307
           LRDIER
Sbjct: 301 LRDIER 306

[Close]
BLAST of IVF0024875 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 620.9 bits (1600), Expect = 2.9e-174
Identity = 302/306 (98.69%), Postives = 305/306 (99.67%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFEL+AIH+AL+QTNEQLREIAQWPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAQWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIER 307
           LRDIER
Sbjct: 301 LRDIER 306

[Close]
BLAST of IVF0024875 vs. ExPASy TrEMBL
Match: A0A5A7T9G6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002710 PE=4 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 3.8e-174
Identity = 302/306 (98.69%), Postives = 305/306 (99.67%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFEL+AIHVAL+QTNEQLREIAQWPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILR+MPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILRKMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIER 307
           LRDIER
Sbjct: 301 LRDIER 306

[Close]
BLAST of IVF0024875 vs. ExPASy TrEMBL
Match: A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 1.1e-173
Identity = 300/308 (97.40%), Postives = 306/308 (99.35%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRAS+GRTGSSGSKRKRGSQRDFEL+AIH+AL+QTNEQLR+IA+WPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIERYF 309
           LRDIER F
Sbjct: 301 LRDIERLF 308

[Close]
BLAST of IVF0024875 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 1.9e-173
Identity = 300/306 (98.04%), Postives = 305/306 (99.67%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRAS+GRTGSSGSKRKRGSQRDFEL+AIH+AL+QTNEQLREIA+WPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIER 307
           LRDIER
Sbjct: 301 LRDIER 306

[Close]
BLAST of IVF0024875 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 617 bits (1591), Expect = 1.10e-222
Identity = 303/306 (99.02%), Postives = 305/306 (99.67%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFEL+AIHVAL+QTNEQLREIAQWPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIER 306
           LRDIER
Sbjct: 301 LRDIER 306

[Close]
BLAST of IVF0024875 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 616 bits (1588), Expect = 3.15e-222
Identity = 302/306 (98.69%), Postives = 305/306 (99.67%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFEL+AIH+AL+QTNEQLREIAQWPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAQWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIER 306
           LRDIER
Sbjct: 301 LRDIER 306

[Close]
BLAST of IVF0024875 vs. NCBI nr
Match: KAA0038065.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 615 bits (1587), Expect = 4.48e-222
Identity = 302/306 (98.69%), Postives = 305/306 (99.67%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFEL+AIHVAL+QTNEQLREIAQWPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILR+MPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILRKMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIER 306
           LRDIER
Sbjct: 301 LRDIER 306

[Close]
BLAST of IVF0024875 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 613 bits (1581), Expect = 3.68e-221
Identity = 300/306 (98.04%), Postives = 305/306 (99.67%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRAS+GRTGSSGSKRKRGSQRDFEL+AIH+AL+QTNEQLREIA+WPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIER 306
           LRDIER
Sbjct: 301 LRDIER 306

[Close]
BLAST of IVF0024875 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 614 bits (1583), Expect = 7.50e-221
Identity = 300/308 (97.40%), Postives = 306/308 (99.35%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATCRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
           LLNKPFPYYDELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELKAIHVALEQTNEQLREIAQWPA 240
           VDISQDDVRASRPSRAS+GRTGSSGSKRKRGSQRDFEL+AIH+AL+QTNEQLR+IA+WPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

Query: 301 LRDIERYF 308
           LRDIER F
Sbjct: 301 LRDIERLF 308

[Close]
BLAST of IVF0024875 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-07
Identity = 34/137 (24.82%), Postives = 65/137 (47.45%), Query Frame = 0 

Query: 9   RHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVID 68
           R  WT   +  L++ L+E V+ G       TF      ++V     K  G Q     V+ 
Sbjct: 324 RIFWTPPMDYHLIDLLVEQVNNGNRVGQ--TFITSAWNEMVTAFNAKF-GSQ-HNKDVLK 383

Query: 69  CRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPY 128
            R K L+R +  I  +     +GF W+     ++A+ ++++ ++++HP A+    K  P 
Sbjct: 384 NRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPS 443

Query: 129 YDELTYVFGRDRATCRF 146
           Y  L ++FG++ +  R+
Sbjct: 444 YPNLCFIFGKETSDGRY 454

[Close]
BLAST of IVF0024875 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 6.0e-07
Identity = 21/72 (29.17%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 66  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 125
           V+  R K+L+R F AI  +      GF W++E + + A+  ++ +++++H  A+  + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 126 FPYYDELTYVFG 138
            PYY +L  + G
Sbjct: 296 IPYYKDLCVLCG 305

[Close]
BLAST of IVF0024875 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 52.8 bits (125), Expect = 6.0e-07
Identity = 21/72 (29.17%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 66  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 125
           V+  R K+L+R F AI  +      GF W++E + + A+  ++ +++++H  A+  + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 126 FPYYDELTYVFG 138
            PYY +L  + G
Sbjct: 296 IPYYKDLCVLCG 305

[Close]
BLAST of IVF0024875 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 7.4e-05
Identity = 28/125 (22.40%), Postives = 55/125 (44.00%), Query Frame = 0 

Query: 12  WTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRI 71
           WT E +   VE +++ +  G  K+ N   +  ++  LV   A        R       ++
Sbjct: 172 WTLEMDQYFVEIMVDQIGRGN-KTGNAFSKQAWIDMLVLFNARFSGQYGKRVLRHRYNKL 231

Query: 72  KTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDE 131
               +  +AI +       GF W++    I A+  ++D++++ HP A+    K  P Y++
Sbjct: 232 LKYYKDMEAILKE-----DGFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYND 290

Query: 132 LTYVF 137
           L  +F
Sbjct: 292 LDTIF 290

The following BLAST results are available for this feature:
BLAST of IVF0024875 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024875 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CWL21.3e-17499.02Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCN92.9e-17498.69Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T9G63.8e-17498.69Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SRU11.1e-17397.40Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TRV11.9e-17398.04Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0024875 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031555.11.10e-22299.02retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon... [more]
TYJ96194.13.15e-22298.69retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p... [more]
KAA0038065.14.48e-22298.69retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033744.13.68e-22198.04retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon... [more]
KAA0032766.17.50e-22197.40retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of IVF0024875 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G24960.21.6e-0724.82unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G02210.16.0e-0729.17unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.26.0e-0729.17unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.17.4e-0522.40unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 12..110
e-value: 2.3E-7
score: 31.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..213
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..298
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 2..298

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024875.1IVF0024875.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane