IVF0024634 (gene) Melon (IVF77) v1

Overview
NameIVF0024634
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr02: 8373597 .. 8373953 (+)
RNA-Seq ExpressionIVF0024634
SyntenyIVF0024634
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCAGAAACAAATAAAGGAGAGGTCAGAAATGAATGAGGAGGACATTAGGAAACTGAAAGATTTAGTTTTGGGGTTGTCCAAAAGTGTCGAAAGCCTCGCAGAGGAATTGAGAGAAAACATTGTTAGTCGCCGACGGGAAGAATCTGGTAAGTCGGAGGGATCAGTATTGAAAATGAACGGAAAAATGGAAGAAGACCGGGGCACAATTGAGAAAGGGACTTGGGAGCAAGCGCTTAAATGGGCTGCCAATTGCAAATGCAAGACGGCTGAGAGAGGAGACTCCATGGACATGGGAGCAGACGCAAAAATGGATTCCGGATTGCAAGGCGGAAAGAATACAGAGGAATGTTAG

mRNA sequence

ATGGCGCAGAAACAAATAAAGGAGAGGTCAGAAATGAATGAGGAGGACATTAGGAAACTGAAAGATTTAGTTTTGGGGTTGTCCAAAAGTGTCGAAAGCCTCGCAGAGGAATTGAGAGAAAACATTGTTAGTCGCCGACGGGAAGAATCTGGTAAGTCGGAGGGATCAGTATTGAAAATGAACGGAAAAATGGAAGAAGACCGGGGCACAATTGAGAAAGGGACTTGGGAGCAAGCGCTTAAATGGGCTGCCAATTGCAAATGCAAGACGGCTGAGAGAGGAGACTCCATGGACATGGGAGCAGACGCAAAAATGGATTCCGGATTGCAAGGCGGAAAGAATACAGAGGAATGTTAG

Coding sequence (CDS)

ATGGCGCAGAAACAAATAAAGGAGAGGTCAGAAATGAATGAGGAGGACATTAGGAAACTGAAAGATTTAGTTTTGGGGTTGTCCAAAAGTGTCGAAAGCCTCGCAGAGGAATTGAGAGAAAACATTGTTAGTCGCCGACGGGAAGAATCTGGTAAGTCGGAGGGATCAGTATTGAAAATGAACGGAAAAATGGAAGAAGACCGGGGCACAATTGAGAAAGGGACTTGGGAGCAAGCGCTTAAATGGGCTGCCAATTGCAAATGCAAGACGGCTGAGAGAGGAGACTCCATGGACATGGGAGCAGACGCAAAAATGGATTCCGGATTGCAAGGCGGAAAGAATACAGAGGAATGTTAG

Protein sequence

MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQGGKNTEEC
Homology
BLAST of IVF0024634 vs. ExPASy TrEMBL
Match: A0A5D3BYR5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold758G00280 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.1e-49
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 12  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTI 71
           MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTI
Sbjct: 1   MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTI 60

Query: 72  EKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQGGKNTEE 118
           EKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQGGKNTEE
Sbjct: 61  EKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQGGKNTEE 106

BLAST of IVF0024634 vs. ExPASy TrEMBL
Match: A0A5A7UYN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold542G00330 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0

Query: 12  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTI 71
           MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMN KMEEDRGTI
Sbjct: 1   MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNRKMEEDRGTI 60

Query: 72  EKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQGGKNTEEC 119
           EKGTWEQALKWAANCKCK AER DSMDMGA AKMD GLQGGKNTEEC
Sbjct: 61  EKGTWEQALKWAANCKCKAAEREDSMDMGAGAKMDCGLQGGKNTEEC 107

BLAST of IVF0024634 vs. ExPASy TrEMBL
Match: A0A5A7UFA8 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold751G00070 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 1  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKM 60
          MAQKQ  ER E NE +I+ LK+++LGL KSVE L EE+ EN  SR +EESG+S GS+LKM
Sbjct: 1  MAQKQTNERLETNEREIKDLKEIILGLMKSVERLVEEVTENSASRHKEESGRSNGSMLKM 60

Query: 61 NGKME 66
           GK +
Sbjct: 61 KGKTD 65

BLAST of IVF0024634 vs. ExPASy TrEMBL
Match: A0A5D3BYD7 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001960 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 1  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKM 60
          MAQKQ  ER E NE +I+ LK+++LGL KSVE L EE+ EN  SR +EESG+S GS+LKM
Sbjct: 1  MAQKQTNERLETNEREIKDLKEIILGLMKSVERLVEEVTENSASRHKEESGRSNGSMLKM 60

Query: 61 NGK-------MEEDRGTIEKGTWEQ 79
           GK       M    GT +K  +++
Sbjct: 61 KGKTDGIDLTMGMGHGTTDKSKYKK 85

BLAST of IVF0024634 vs. ExPASy TrEMBL
Match: A0A5A7TII1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001860 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.0e-08
Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 1  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKM 60
          MAQ+Q++ER E  E+++  LK+++L + KS++ LA+ELREN   +++EESG S+GS++KM
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61 NGKMEEDRGTIEKGT 76
           GKMEE   T E  T
Sbjct: 61 KGKMEETDITGEVNT 75

BLAST of IVF0024634 vs. NCBI nr
Match: TYK04250.1 (uncharacterized protein E5676_scaffold758G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (520), Expect = 2.11e-65
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 12  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTI 71
           MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTI
Sbjct: 1   MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTI 60

Query: 72  EKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQGGKNTEE 117
           EKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQGGKNTEE
Sbjct: 61  EKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQGGKNTEE 106

BLAST of IVF0024634 vs. NCBI nr
Match: KAA0060164.1 (uncharacterized protein E6C27_scaffold542G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (496), Expect = 2.55e-62
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0

Query: 12  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTI 71
           MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMN KMEEDRGTI
Sbjct: 1   MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNRKMEEDRGTI 60

Query: 72  EKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQGGKNTEEC 118
           EKGTWEQALKWAANCKCK AER DSMDMGA AKMD GLQGGKNTEEC
Sbjct: 61  EKGTWEQALKWAANCKCKAAEREDSMDMGAGAKMDCGLQGGKNTEEC 107

BLAST of IVF0024634 vs. NCBI nr
Match: KAE8652492.1 (hypothetical protein Csa_013556 [Cucumis sativus])

HSP 1 Score: 106 bits (264), Expect = 1.17e-26
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 6  IKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKME 65
          ++ER E NE+DIR+LKD+ L LSKS+E LAEELRE+ VS RREES  SEGSVLKM GKME
Sbjct: 1  MEERLEKNEKDIRELKDVTLELSKSIERLAEELRESNVSCRREESATSEGSVLKMKGKME 60

Query: 66 EDRGTIEKGTWEQALKWAANCKCK 89
          ED   +E+GTWEQALKWAA+   +
Sbjct: 61 EDSTAVERGTWEQALKWAADANLR 84

BLAST of IVF0024634 vs. NCBI nr
Match: KAA0053177.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.03e-12
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 1  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKM 60
          MAQKQ  ER E NE +I+ LK+++LGL KSVE L EE+ EN  SR +EESG+S GS+LKM
Sbjct: 1  MAQKQTNERLETNEREIKDLKEIILGLMKSVERLVEEVTENSASRHKEESGRSNGSMLKM 60

Query: 61 NGK 63
           GK
Sbjct: 61 KGK 63

BLAST of IVF0024634 vs. NCBI nr
Match: TYK03089.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 1.10e-11
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 1  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKM 60
          MAQKQ  ER E NE +I+ LK+++LGL KSVE L EE+ EN  SR +EESG+S GS+LKM
Sbjct: 1  MAQKQTNERLETNEREIKDLKEIILGLMKSVERLVEEVTENSASRHKEESGRSNGSMLKM 60

Query: 61 NGK 63
           GK
Sbjct: 61 KGK 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BYR53.1e-49100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UYN11.9e-4695.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UFA81.1e-0960.00Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5D3BYD71.4e-0950.59Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... [more]
A0A5A7TII16.0e-0849.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK04250.12.11e-65100.00uncharacterized protein E5676_scaffold758G00280 [Cucumis melo var. makuwa][more]
KAA0060164.12.55e-6295.33uncharacterized protein E6C27_scaffold542G00330 [Cucumis melo var. makuwa][more]
KAE8652492.11.17e-2667.86hypothetical protein Csa_013556 [Cucumis sativus][more]
KAA0053177.16.03e-1261.90Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa][more]
TYK03089.11.10e-1161.90Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024634.2IVF0024634.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding