IVF0024511 (gene) Melon (IVF77) v1

Overview


Name	IVF0024511
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr03: 15807751 .. 15808487 (-)
RNA-Seq Expression	IVF0024511
Synteny	IVF0024511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTGGTCAAGCTTAAAAACTTCGATCCTCTTCTTGACGCAACCTCCTTTCTTGCTCAAATTTCCTTCGACAATGCTGACCTGAAATTTACGCCTTCGAAATTCTTCATAATTGCCTCGCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCCCCACAATGGTTTACTACTTTTTCCGTTGATAATGATCATAGTTCTAAGGTTTCCCTTGAATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATGATCCTTCGATTTGATACTCCTTCAAGTAAGTATATTTTTCTTTTAAATCTTTTAATTTGCTTCCAAAATTACATGATGCTATATTCTTGTCATTTCTTGATCAACATTTTAGATTATTATTTTCTTATGTATATATTGTGAGAACAATTACCTTGTTACATAATAATTATCTTGATTGTTTTGTGGGAGATTTTTCTCTTAATCTTTAATTTCTTTATTATTTAGGGTTTAGTCTAATTAATTCGAATTATATGGTTTGTTTTTTAGGCGAAATCCAACCTTTGCATCATGAATTGACATTGTCACCTCCGCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAAGAAAATATTTCATAGTTAAATCTAAGGCATTAAGACGAATTATCAAAGATTTACCTATCTTCCAAAATGATTCAAGTAATTGA

mRNA sequence

ATGTTCTTGGTCAAGCTTAAAAACTTCGATCCTCTTCTTGACGCAACCTCCTTTCTTGCTCAAATTTCCTTCGACAATGCTGACCTGAAATTTACGCCTTCGAAATTCTTCATAATTGCCTCGCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCCCCACAATGGTTTACTACTTTTTCCGTTGATAATGATCATAGTTCTAAGGTTTCCCTTGAATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATGATCCTTCGATTTGATACTCCTTCAAGCGAAATCCAACCTTTGCATCATGAATTGACATTGTCACCTCCGCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAAGAAAATATTTCATAGTTAAATCTAAGGCATTAAGACGAATTATCAAAGATTTACCTATCTTCCAAAATGATTCAAGTAATTGA

Coding sequence (CDS)

ATGTTCTTGGTCAAGCTTAAAAACTTCGATCCTCTTCTTGACGCAACCTCCTTTCTTGCTCAAATTTCCTTCGACAATGCTGACCTGAAATTTACGCCTTCGAAATTCTTCATAATTGCCTCGCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCCCCACAATGGTTTACTACTTTTTCCGTTGATAATGATCATAGTTCTAAGGTTTCCCTTGAATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATGATCCTTCGATTTGATACTCCTTCAAGCGAAATCCAACCTTTGCATCATGAATTGACATTGTCACCTCCGCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAAGAAAATATTTCATAGTTAAATCTAAGGCATTAAGACGAATTATCAAAGATTTACCTATCTTCCAAAATGATTCAAGTAATTGA

Protein sequence

MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTLSPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSSN

Homology

[Close]

BLAST of IVF0024511 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 4.9e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 163
           SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162

[Close]

BLAST of IVF0024511 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 4.9e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 163
           SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162

[Close]

BLAST of IVF0024511 vs. ExPASy TrEMBL
Match: A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.8e-80
Identity = 153/164 (93.29%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+ILRFDTPSSEIQPLHHEL L
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSSN 165
           SPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDSSN
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN 164

[Close]

BLAST of IVF0024511 vs. ExPASy TrEMBL
Match: A0A5D3BV00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00830 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.0e-62
Identity = 121/162 (74.69%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLVKL  F+PLLD+TS+LAQ S DNAD+KF P K F+I  +RSPRF ATLQLSP+WF+ 
Sbjct: 1   MFLVKLTEFEPLLDSTSYLAQYSNDNADIKFAPGKLFLIVPNRSPRFFATLQLSPRWFSN 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           +SVD+ HSSKVSLESFHDA+LDGG F+SM+IHLLDKTNQM LRFDTPSS+IQP HHELTL
Sbjct: 61  YSVDHVHSSKVSLESFHDAMLDGGDFSSMSIHLLDKTNQMFLRFDTPSSQIQPSHHELTL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 163
           SPPQ+ED QI +HELD  K+ IVKSK+LRR+IK+LPIF NDS
Sbjct: 121 SPPQSEDIQICEHELDLDKFVIVKSKSLRRVIKELPIFHNDS 162

[Close]

BLAST of IVF0024511 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.8e-48
Identity = 104/162 (64.20%), Postives = 131/162 (80.86%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLV+L+ F+PL+DATS LAQ++ D AD+KFTP    II S+RSP+F+ATLQLS + FT 
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKD-ADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTN 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           FSVD++ SSKVSL+ FHDA+LDGGSF+SMTIHLLD TNQM+LRF+TPS ++ PLHHEL L
Sbjct: 61  FSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELAL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 163
           SPPQAE+  +GQ E     +F V S+ LRRIIK+LP+F  D+
Sbjct: 121 SPPQAEN--LGQVEYG--NFFTVTSRELRRIIKELPLFHQDT 157

[Close]

BLAST of IVF0024511 vs. NCBI nr
Match: XP_008464344.1 (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 321 bits (823), Expect = 3.47e-109
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162
           SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162

[Close]

BLAST of IVF0024511 vs. NCBI nr
Match: XP_031743987.1 (uncharacterized protein LOC116404759 [Cucumis sativus])

HSP 1 Score: 302 bits (773), Expect = 6.05e-102
Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+ILRFDTPSSEIQPLHHEL L
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162
           SPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 162

[Close]

BLAST of IVF0024511 vs. NCBI nr
Match: KAA0045262.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK28688.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 321 bits (823), Expect = 1.25e-99
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162
           SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162

[Close]

BLAST of IVF0024511 vs. NCBI nr
Match: TYK02994.1 (uncharacterized protein E5676_scaffold46G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 246 bits (628), Expect = 6.18e-80
Identity = 121/162 (74.69%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLVKL  F+PLLD+TS+LAQ S DNAD+KF P K F+I  +RSPRF ATLQLSP+WF+ 
Sbjct: 1   MFLVKLTEFEPLLDSTSYLAQYSNDNADIKFAPGKLFLIVPNRSPRFFATLQLSPRWFSN 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           +SVD+ HSSKVSLESFHDA+LDGG F+SM+IHLLDKTNQM LRFDTPSS+IQP HHELTL
Sbjct: 61  YSVDHVHSSKVSLESFHDAMLDGGDFSSMSIHLLDKTNQMFLRFDTPSSQIQPSHHELTL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162
           SPPQ+ED QI +HELD  K+ IVKSK+LRR+IK+LPIF NDS
Sbjct: 121 SPPQSEDIQICEHELDLDKFVIVKSKSLRRVIKELPIFHNDS 162

[Close]

BLAST of IVF0024511 vs. NCBI nr
Match: XP_031743957.1 (uncharacterized protein LOC116404737 [Cucumis sativus])

HSP 1 Score: 247 bits (630), Expect = 9.63e-80
Identity = 122/162 (75.31%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
           MFLVKL  F+PLLD+T FLA  S +NA +KFTP K F+I S+R P FIATLQLSP+WFT 
Sbjct: 1   MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTN 60

Query: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
           FSVD+ HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQMILRFDTPSS+IQPLH ELTL
Sbjct: 61  FSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQMILRFDTPSSQIQPLHRELTL 120

Query: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162
           SPPQ+ED++IGQHEL+ +K+FIV SK+LRR+IK+LPIFQNDS
Sbjct: 121 SPPQSEDDRIGQHELNLQKFFIVTSKSLRRVIKELPIFQNDS 162

The following BLAST results are available for this feature:

BLAST of IVF0024511 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZ07	4.9e-85	100.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CL88	4.9e-85	100.00	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]
A0A0A0K902	2.8e-80	93.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]
A0A5D3BV00	2.0e-62	74.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C8J1	4.8e-48	64.20	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]

BLAST of IVF0024511 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464344.1	3.47e-109	100.00	PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]	[more]
XP_031743987.1	6.05e-102	93.21	uncharacterized protein LOC116404759 [Cucumis sativus]	[more]
KAA0045262.1	1.25e-99	100.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK286...	[more]
TYK02994.1	6.18e-80	74.69	uncharacterized protein E5676_scaffold46G00830 [Cucumis melo var. makuwa]	[more]
XP_031743957.1	9.63e-80	75.31	uncharacterized protein LOC116404737 [Cucumis sativus]	[more]

BLAST of IVF0024511 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..162 e-value: 4.1E-17 score: 64.3
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024511.1	IVF0024511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane