IVF0024307 (gene) Melon (IVF77) v1

Overview
NameIVF0024307
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr07: 5002428 .. 5002667 (-)
RNA-Seq ExpressionIVF0024307
SyntenyIVF0024307
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAATGCTTCCAACGAGTGGGAAGGCTCGTCTGGTGTCAAAAATCACTGGAAACAAACTTGCAACGAAGGAATCGGGCTAAGCTCGATGATATCTGATGTTCGTCCCAAGAAAATGATAGCAAGAGATGCCTGGACTCAGTTATCTCGTCCTGGGGTAAAAAGAGGTCCCACGACGGTTTCTTCCCTTTGCTTCGTATTGGTCAGAAGTCTTTCGATCTTTGGGGCTCGAACTTGA

mRNA sequence

ATGGCTAATGCTTCCAACGAGTGGGAAGGCTCGTCTGGTGTCAAAAATCACTGGAAACAAACTTGCAACGAAGGAATCGGGCTAAGCTCGATGATATCTGATGTTCGTCCCAAGAAAATGATAGCAAGAGATGCCTGGACTCAGTTATCTCGTCCTGGGGTAAAAAGAGGTCCCACGACGGTTTCTTCCCTTTGCTTCGTATTGGTCAGAAGTCTTTCGATCTTTGGGGCTCGAACTTGA

Coding sequence (CDS)

ATGGCTAATGCTTCCAACGAGTGGGAAGGCTCGTCTGGTGTCAAAAATCACTGGAAACAAACTTGCAACGAAGGAATCGGGCTAAGCTCGATGATATCTGATGTTCGTCCCAAGAAAATGATAGCAAGAGATGCCTGGACTCAGTTATCTCGTCCTGGGGTAAAAAGAGGTCCCACGACGGTTTCTTCCCTTTGCTTCGTATTGGTCAGAAGTCTTTCGATCTTTGGGGCTCGAACTTGA

Protein sequence

MANASNEWEGSSGVKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVLVRSLSIFGART
Homology
BLAST of IVF0024307 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-14
Identity = 48/71 (67.61%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 9   EGSSGVKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVL 68
           E SSGV+N WK TC EG GLSS  S  RPKK  AR   TQ SRPG K  P TVS+LC VL
Sbjct: 263 ERSSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVL 322

Query: 69  VRSLSIFGART 80
           VRSLSIFGA T
Sbjct: 323 VRSLSIFGAPT 333

BLAST of IVF0024307 vs. ExPASy TrEMBL
Match: A0A5D3DIK9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00040 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 46/71 (64.79%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 9  EGSSGVKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVL 68
          E  SGV+NHWK TC+EG GL+S  S VR KK  AR   T +S PG K  P  VSSLCFVL
Sbjct: 7  ERLSGVRNHWKYTCSEGNGLNSRTSSVRLKKTRARMPQTLVSHPGAKSRPPMVSSLCFVL 66

Query: 69 VRSLSIFGART 80
          V SLSIFGART
Sbjct: 67 VISLSIFGART 77

BLAST of IVF0024307 vs. ExPASy TrEMBL
Match: A0A5D3CQ36 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00910 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.4e-13
Identity = 44/66 (66.67%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 14 VKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVLVRSLS 73
          V+NHWK  C+EG GLSS  S  RPKK  AR   TQ SRPGVK  P TVSSLCFVL  SLS
Sbjct: 12 VRNHWKCACSEGNGLSSRTSGARPKKTRARMPLTQFSRPGVKSDPPTVSSLCFVLAISLS 71

Query: 74 IFGART 80
          IF A T
Sbjct: 72 IFEACT 77

BLAST of IVF0024307 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 44/71 (61.97%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 9    EGSSGVKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVL 68
            E SSGV+NHWK TC+EG GL+S  S   PKK  AR   +Q SR G K    TVSSLCFVL
Sbjct: 1503 ERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVL 1562

Query: 69   VRSLSIFGART 80
            V +LSIF ART
Sbjct: 1563 VINLSIFEART 1573

BLAST of IVF0024307 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 9   EGSSGVKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVL 68
           E SSG++NHWK  C+EG GLSS  S  RPKK  AR    Q SRPG K GP T+SSLC V 
Sbjct: 114 ECSSGIRNHWKGPCSEGNGLSSRTSGARPKKTRARMPLNQFSRPGAKSGPPTISSLCSVG 173

Query: 69  VRSLS 74
            R+ S
Sbjct: 174 KRARS 178

BLAST of IVF0024307 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 5.34e-18
Identity = 48/71 (67.61%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 9   EGSSGVKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVL 68
           E SSGV+N WK TC EG GLSS  S  RPKK  AR   TQ SRPG K  P TVS+LC VL
Sbjct: 263 ERSSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVL 322

Query: 69  VRSLSIFGART 79
           VRSLSIFGA T
Sbjct: 323 VRSLSIFGAPT 333

BLAST of IVF0024307 vs. NCBI nr
Match: TYK23423.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.16e-17
Identity = 45/68 (66.18%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 12 SGVKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVLVRS 71
          SGV+NHWK TC+EG GL+S  S VR KK  AR   T +S PG K  P  VSSLCFVLV S
Sbjct: 10 SGVRNHWKYTCSEGNGLNSRTSSVRLKKTRARMPQTLVSHPGAKSRPPMVSSLCFVLVIS 69

Query: 72 LSIFGART 79
          LSIFGART
Sbjct: 70 LSIFGART 77

BLAST of IVF0024307 vs. NCBI nr
Match: KAA0037172.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 2.38e-17
Identity = 44/66 (66.67%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 14 VKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVLVRSLS 73
          V+NHWK  C+EG GLSS  S  RPKK  AR   TQ SRPGVK  P TVSSLCFVL  SLS
Sbjct: 12 VRNHWKCACSEGNGLSSRTSGARPKKTRARMPLTQFSRPGVKSDPPTVSSLCFVLAISLS 71

Query: 74 IFGART 79
          IF A T
Sbjct: 72 IFEACT 77

BLAST of IVF0024307 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.10e-15
Identity = 44/71 (61.97%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 9    EGSSGVKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVL 68
            E SSGV+NHWK TC+EG GL+S  S   PKK  AR   +Q SR G K    TVSSLCFVL
Sbjct: 1503 ERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVL 1562

Query: 69   VRSLSIFGART 79
            V +LSIF ART
Sbjct: 1563 VINLSIFEART 1573

BLAST of IVF0024307 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 2.94e-13
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 9   EGSSGVKNHWKQTCNEGIGLSSMISDVRPKKMIARDAWTQLSRPGVKRGPTTVSSLCFVL 68
           E SSG++NHWK  C+EG GLSS  S  RPKK  AR    Q SRPG K GP T+SSLC V 
Sbjct: 114 ECSSGIRNHWKGPCSEGNGLSSRTSGARPKKTRARMPLNQFSRPGAKSGPPTISSLCSVG 173

Query: 69  VRSLS 73
            R+ S
Sbjct: 174 KRARS 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DFP22.2e-1467.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DIK91.1e-1364.79DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CQ365.4e-1366.67Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7V5J22.0e-1261.97Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5A7UVV02.5e-1058.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK22521.15.34e-1867.61uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
TYK23423.12.16e-1766.18DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
KAA0037172.12.38e-1766.67putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nucleas... [more]
KAA0062888.11.10e-1561.97non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
KAA0057641.12.94e-1358.46hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024307.1IVF0024307.1mRNA