IVF0024113 (gene) Melon (IVF77) v1

Overview


Name	IVF0024113
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CACTA en-spm transposon protein
Location	chr11: 10014447 .. 10014647 (-)
RNA-Seq Expression	IVF0024113
Synteny	IVF0024113

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGTGCAACCAGTGCCTCAAGCTTGTGTCTGCAATCCACGGTAGAGCTCCAATTACAGGTCGAGCTCGATGAAGCTAAGCGAGCAATCAAATAACAGAGAAAGACACAAGAGATGATAGCTTTACAAGTGGAACATATACGAAAGGTCATAGAAGACATGAATTGGGCACAACAAGGATCACCACATGATCCTTAG

mRNA sequence

ATGGCCAGTGCAACCAGTGCCTCAAGCTTGTGTCTGCAATCCACGGTAGAGCTCCAATTACAGGTCGAGCTCGATGAAGCTAAGCGAATGATAGCTTTACAAGTGGAACATATACGAAAGGTCATAGAAGACATGAATTGGGCACAACAAGGATCACCACATGATCCTTAG

Coding sequence (CDS)

ATGGCCAGTGCAACCAGTGCCTCAAGCTTGTGTCTGCAATCCACGGTAGAGCTCCAATTACAGGTCGAGCTCGATGAAGCTAAGCGAATGATAGCTTTACAAGTGGAACATATACGAAAGGTCATAGAAGACATGAATTGGGCACAACAAGGATCACCACATGATCCTTAG

Protein sequence

MASATSASSLCLQSTVELQLQVELDEAKRMIALQVEHIRKVIEDMNWAQQGSPHDP

Homology

[Close]

BLAST of IVF0024113 vs. ExPASy TrEMBL
Match: A0A5D3DBI6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 3   SATSASSLCLQSTVELQLQVELDEAKR----------MIALQVEHIRKVIEDMNWAQQGS 57
           SA+SA++ CLQSTVELQL VEL+EAKR          M+AL+VE +RK+IE+M+ AQQG 
Sbjct: 222 SASSATTSCLQSTVELQLPVELNEAKRVIEEQTKIQDMLALKVERMRKLIENMSRAQQGP 281

[Close]

BLAST of IVF0024113 vs. ExPASy TrEMBL
Match: A0A5A7STK6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00120 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 3   SATSASSLCLQSTVELQLQVELDEAKR----------MIALQVEHIRKVIEDMNWAQQGS 57
           SA+SA++ CLQSTVELQL VEL+EAKR          M+AL+VE +RK+IE+M+ AQQG 
Sbjct: 236 SASSATTSCLQSTVELQLPVELNEAKRVIEEQTKIQDMLALKVERMRKLIENMSRAQQGP 295

[Close]

BLAST of IVF0024113 vs. ExPASy TrEMBL
Match: A0A5A7THJ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001050 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1   MASATSASSLCLQSTVELQLQVELDEAKRMI----------ALQVEHIRKVIEDMNWAQQ 57
           MA A+SA + CLQSTVELQL+VEL EAKR I          A +VE  RK+IEDM  AQQ
Sbjct: 88  MARASSAMTSCLQSTVELQLRVELYEAKRAIEEQTRKQDTLASEVERTRKLIEDMTGAQQ 147

[Close]

BLAST of IVF0024113 vs. ExPASy TrEMBL
Match: A0A5D3CLB0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001370 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1  MASATSASSLCLQSTVELQLQVELDEAKR----------MIALQVEHIRKVIEDMNWAQQ 57
          MAS +SA++ CLQS VELQL+V L+EAKR          ++A +VE I K+I+DM  AQQ
Sbjct: 24 MASVSSATTSCLQSMVELQLRVNLNEAKRAIEEQTRNHNVLASEVERIWKLIKDMTRAQQ 83

[Close]

BLAST of IVF0024113 vs. ExPASy TrEMBL
Match: A0A5A7UMN9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00240 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-06
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 2   ASATSASSLCLQSTVELQLQVELDEAKRMI----------ALQVEHIRKVIEDMNWAQQG 57
           A  +S+S+L  QST+ELQLQ  LD+A + I          AL+VE +RK IE ++WAQQG
Sbjct: 48  AGMSSSSTLYSQSTIELQLQAALDQAMQQIEEHIRNHNVLALEVERMRKFIEYISWAQQG 107

[Close]

BLAST of IVF0024113 vs. NCBI nr
Match: TYK20926.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.89e-11
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 3   SATSASSLCLQSTVELQLQVELDEAKR----------MIALQVEHIRKVIEDMNWAQQGS 56
           SA+SA++ CLQSTVELQL VEL+EAKR          M+AL+VE +RK+IE+M+ AQQG 
Sbjct: 222 SASSATTSCLQSTVELQLPVELNEAKRVIEEQTKIQDMLALKVERMRKLIENMSRAQQGP 281

[Close]

BLAST of IVF0024113 vs. NCBI nr
Match: KAA0032555.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 2.09e-11
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 3   SATSASSLCLQSTVELQLQVELDEAKR----------MIALQVEHIRKVIEDMNWAQQGS 56
           SA+SA++ CLQSTVELQL VEL+EAKR          M+AL+VE +RK+IE+M+ AQQG 
Sbjct: 236 SASSATTSCLQSTVELQLPVELNEAKRVIEEQTKIQDMLALKVERMRKLIENMSRAQQGP 295

[Close]

BLAST of IVF0024113 vs. NCBI nr
Match: KAA0042882.1 (uncharacterized protein E6C27_scaffold44G003990 [Cucumis melo var. makuwa] >TYK05285.1 uncharacterized protein E5676_scaffold108G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.31e-11
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1   MASATSASSLCLQSTVELQLQVELDEAKRMI----------ALQVEHIRKVIEDMNWAQQ 56
           MA A+SA + CLQSTVELQL+VEL EAKR I          A +VE  RK+IEDM  AQQ
Sbjct: 88  MARASSAMTSCLQSTVELQLRVELYEAKRAIEEQTRKQDTLASEVERTRKLIEDMTGAQQ 147

[Close]

BLAST of IVF0024113 vs. NCBI nr
Match: TYK11954.1 (uncharacterized protein E5676_scaffold177G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 5.10e-10
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1  MASATSASSLCLQSTVELQLQVELDEAKRMI----------ALQVEHIRKVIEDMNWAQQ 56
          MAS +SA++ CLQS VELQL+V L+EAKR I          A +VE I K+I+DM  AQQ
Sbjct: 24 MASVSSATTSCLQSMVELQLRVNLNEAKRAIEEQTRNHNVLASEVERIWKLIKDMTRAQQ 83

[Close]

BLAST of IVF0024113 vs. NCBI nr
Match: KAA0055526.1 (uncharacterized protein E6C27_scaffold221G001080 [Cucumis melo var. makuwa] >TYJ95723.1 uncharacterized protein E5676_scaffold282G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.97e-09
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 5   TSASSLCLQSTVELQLQVELDEAKRMI----------ALQVEHIRKVIEDMNWAQQGSPH 56
           +S+S+L  QST+ELQLQ  LD+A + I          AL+VE +RK IE ++WAQQGSPH
Sbjct: 51  SSSSTLYSQSTIELQLQAALDQAMQQIEEHIRNHNVLALEVERMRKFIEYISWAQQGSPH 110

The following BLAST results are available for this feature:

BLAST of IVF0024113 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024113 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DBI6	1.7e-08	60.94	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7STK6	1.7e-08	60.94	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7THJ4	1.4e-07	60.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CLB0	3.5e-06	54.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UMN9	7.7e-06	52.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0024113 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20926.1	1.89e-11	60.94	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0032555.1	2.09e-11	60.94	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0042882.1	3.31e-11	60.61	uncharacterized protein E6C27_scaffold44G003990 [Cucumis melo var. makuwa] >TYK0...	[more]
TYK11954.1	5.10e-10	56.06	uncharacterized protein E5676_scaffold177G001370 [Cucumis melo var. makuwa]	[more]
KAA0055526.1	4.97e-09	53.23	uncharacterized protein E6C27_scaffold221G001080 [Cucumis melo var. makuwa] >TYJ...	[more]

BLAST of IVF0024113 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024113.1	IVF0024113.1	mRNA