IVF0024062 (gene) Melon (IVF77) v1

Overview


Name	IVF0024062
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Photosystem I iron-sulfur center
Location	chr03: 3439745 .. 3439990 (-)
RNA-Seq Expression	IVF0024062
Synteny	IVF0024062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACATTCAGTAAAGATTTATGATACATGTATAGGATGTACTCAATGTGTTCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATGTAAAGCTAAACAAATAGTTTCGACTCCACGAACGAAAGATTGTTTTGGTAGTAAGAGATGTGAATCTGACTGTCCGACAACTTTTTTGAGTGTTCGCATTTATTTATGGCATGAAACAACTCGAAGCATAGGTCTAGCTTATTGA

mRNA sequence

ATGTCACATTCAGTAAAGATTTATGATACATGTATAGGATGTACTCAATGTGTTCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATGTAAAGCTAAACAAATAGTTTCGACTCCACGAACGAAAGATTGTTTTGGTAGTAAGAGATGTGAATCTGACTGTCCGACAACTTTTTTGAGTGTTCGCATTTATTTATGGCATGAAACAACTCGAAGCATAGGTCTAGCTTATTGA

Coding sequence (CDS)

ATGTCACATTCAGTAAAGATTTATGATACATGTATAGGATGTACTCAATGTGTTCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATGTAAAGCTAAACAAATAGTTTCGACTCCACGAACGAAAGATTGTTTTGGTAGTAAGAGATGTGAATCTGACTGTCCGACAACTTTTTTGAGTGTTCGCATTTATTTATGGCATGAAACAACTCGAAGCATAGGTCTAGCTTATTGA

Protein sequence

MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPTTFLSVRIYLWHETTRSIGLAY

Homology

[Close]

BLAST of IVF0024062 vs. ExPASy Swiss-Prot
Match: P42046 (Photosystem I iron-sulfur center OS=Cucumis sativus OX=3659 GN=psaC PE=1 SV=3)

HSP 1 Score: 164.5 bits (415), Expect = 5.1e-40
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. ExPASy Swiss-Prot
Match: P10793 (Photosystem I iron-sulfur center OS=Pisum sativum OX=3888 GN=psaC PE=1 SV=3)

HSP 1 Score: 164.5 bits (415), Expect = 5.1e-40
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. ExPASy Swiss-Prot
Match: A4GGE7 (Photosystem I iron-sulfur center OS=Phaseolus vulgaris OX=3885 GN=psaC PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.1e-40
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. ExPASy Swiss-Prot
Match: A4QJG7 (Photosystem I iron-sulfur center OS=Aethionema cordifolium OX=434059 GN=psaC PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.3e-39
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. ExPASy Swiss-Prot
Match: A4QJQ1 (Photosystem I iron-sulfur center OS=Aethionema grandiflorum OX=72657 GN=psaC PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.3e-39
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. ExPASy TrEMBL
Match: A0A0F6NKX4 (Photosystem I iron-sulfur center OS=Lathyrus tingitanus OX=3862 GN=psaC PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-37
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVRIYLWHETTRS+GLAY
Sbjct: 61 DFLSVRIYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. ExPASy TrEMBL
Match: A0A218KGA0 (Photosystem I iron-sulfur center OS=Cucumis sativus var. hardwickii OX=319220 GN=psaC PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. ExPASy TrEMBL
Match: D5MAH2 (Photosystem I iron-sulfur center OS=Pisum sativum OX=3888 GN=psaC PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. ExPASy TrEMBL
Match: A0A410HFC6 (Photosystem I iron-sulfur center OS=Trichosanthes kirilowii OX=3677 GN=psaC PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. ExPASy TrEMBL
Match: G3ETV0 (Photosystem I iron-sulfur center OS=Cucumis melo subsp. melo OX=412675 GN=psaC PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. NCBI nr
Match: YP_009141471.1 (photosystem I subunit VII [Lathyrus tingitanus] >AIL55997.1 photosystem I subunit VII [Lathyrus tingitanus])

HSP 1 Score: 164 bits (414), Expect = 8.03e-51
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 81
           FLSVRIYLWHETTRS+GLAY
Sbjct: 61 DFLSVRIYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. NCBI nr
Match: YP_001122848.1 (photosystem I subunit VII [Phaseolus vulgaris] >YP_003587533.1 photosystem I protein C [Pisum sativum] >YP_003587794.1 photosystem I protein C [Lathyrus sativus] >YP_004841836.1 photosystem I subunit VII [Cucumis melo subsp. melo] >YP_009004092.1 photosystem I subunit VII [Cucumis hystrix] >YP_009138885.1 photosystem I subunit VII [Lathyrus pubescens] >YP_009141292.1 photosystem I subunit VII [Lathyrus clymenum] >YP_009141366.1 photosystem I subunit VII [Lathyrus inconspicuus] >YP_009141398.1 photosystem I subunit VII [Lathyrus odoratus] >YP_009317437.1 photosystem I subunit VII [Coccinia grandis] >YP_009326041.1 photosystem I subunit VII [Citrullus lanatus] >YP_009346528.1 photosystem I subunit VII [Cucumis x hytivus] >YP_009348083.1 photosystem I subunit VII [Citrullus mucosospermus] >YP_009420846.1 photosystem I subunit VII [Citrullus colocynthis] >YP_009431608.1 photosystem I subunit VII [Citrullus amarus] >YP_009431694.1 photosystem I subunit VII [Citrullus rehmii] >YP_009447502.1 photosystem I subunit VII [Cucurbita maxima] >YP_009447587.1 photosystem I subunit VII [Cucurbita moschata] >YP_009456113.1 photosystem I subunit VII [Momordica charantia] >YP_009456198.1 photosystem I subunit VII [Lagenaria siceraria] >YP_009457779.1 photosystem I subunit VII [Pisum fulvum] >YP_009488095.1 photosystem I protein C [Pisum abyssinicum] >YP_009505131.1 photosystem I subunit VII [Cucurbita pepo] >YP_009514053.1 photosystem I protein C [Pisum sativum subsp. elatius] >YP_009525236.1 photosystem I subunit VII [Hodgsonia macrocarpa] >YP_009526354.1 photosystem I subunit VII [Hemsleya lijiangensis] >YP_009560886.1 PsaC [Trichosanthes kirilowii] >YP_009569323.1 photosystem I subunit VII [Ceratostigma willmottianum] >YP_009651902.1 photosystem I subunit VII [Chimonanthus praecox] >YP_009751538.1 photosystem I subunit C [Thladiantha dubia] >YP_009751706.1 photosystem I subunit C [Hodgsonia heteroclita] >YP_009751788.1 photosystem I subunit C [Herpetospermum pedunculosum] >YP_009751872.1 photosystem I subunit C [Indofevillea khasiana] >YP_009751956.1 photosystem I subunit C [Cyclanthera pedata] >YP_009752043.1 photosystem I subunit C [Cionosicys macranthus] >YP_009752125.1 photosystem I subunit C [Dendrosicyos socotranus] >YP_009752211.1 photosystem I subunit C [Linnaeosicyos amara] >YP_009752293.1 photosystem I subunit C [Trichosanthes baviensis] >YP_009752380.1 photosystem I subunit C [Bryonia marmorata] >YP_009752462.1 photosystem I subunit C [Trichosanthes tricuspidata] >YP_009752549.1 photosystem I subunit C [Trichosanthes tubiflora] >YP_009752634.1 photosystem I subunit C [Trichosanthes homophylla] >YP_009752716.1 photosystem I subunit C [Ampelosycios humblotii] >YP_009752803.1 photosystem I subunit C [Cyclantheropsis parviflora] >YP_009752888.1 photosystem I subunit C [Baijiania yunnanensis] >YP_009752970.1 photosystem I subunit C [Momordica sessilifolia] >YP_009753057.1 photosystem I subunit C [Gerrardanthus macrorhizus] >YP_009753142.1 photosystem I subunit C [Corallocarpus boehmii] >YP_009753224.1 photosystem I subunit C [Trichosanthes truncata] >YP_009753673.1 photosystem I subunit C [Trichosanthes wallichiana] >YP_009753755.1 photosystem I subunit C [Trichosanthes nervifolia] >YP_009753842.1 photosystem I subunit C [Trichosanthes pilosa] >YP_009753927.1 photosystem I subunit C [Trichosanthes lobata] >YP_009758343.1 photosystem I protein C [Vavilovia formosa] >YP_009768634.1 photosystem I subunit VII [Macrolobium huberianum] >YP_009860126.1 photosystem I subunit VII [Cucumis melo subsp. agrestis] >YP_009868425.1 photosystem I subunit VII [Biancaea sappan] >YP_009898713.1 PSI 9KDa protein [Menonvillea linearis] >YP_009913646.1 photosystem I subunit VII [Luffa acutangula] >YP_009945467.1 photosystem I subunit VII [Sechium edule] >YP_010009442.1 PSI 9KDa protein [Solms-laubachia mieheorum] >YP_010028758.1 photosystem I subunit VII [Melampyrum roseum] >YP_010119785.1 photosystem I subunit VII [Hemsleya zhejiangensis] >YP_010131147.1 photosystem I subunit VII [Benincasa hispida] >YP_247651.1 photosystem I subunit VII [Cucumis sativus] >A4GGE7.1 RecName: Full=Photosystem I iron-sulfur center; AltName: Full=9 kDa polypeptide; AltName: Full=PSI-C; AltName: Full=Photosystem I subunit VII; AltName: Full=PsaC [Phaseolus vulgaris] >P10793.3 RecName: Full=Photosystem I iron-sulfur center; AltName: Full=9 kDa polypeptide; AltName: Full=PSI-C; AltName: Full=Photosystem I subunit VII; AltName: Full=PsaC [Pisum sativum] >P42046.3 RecName: Full=Photosystem I iron-sulfur center; AltName: Full=9 kDa polypeptide; AltName: Full=PS 1 subunit 11; AltName: Full=PSI-C; AltName: Full=Photosystem I subunit VII; AltName: Full=PsaC [Cucumis sativus] >2WSC_C Improved Model of Plant Photosystem I [Pisum sativum] >2WSE_C Improved Model of Plant Photosystem I [Pisum sativum] >2WSF_C Improved Model of Plant Photosystem I [Pisum sativum] >3LW5_C Improved model of plant photosystem I [Pisum sativum] >4Y28_C The structure of plant photosystem I super-complex at 2.8 angstrom resolution. [Pisum sativum] >5L8R_C The structure of plant photosystem I super-complex at 2.6 angstrom resolution. [Pisum sativum] >7DKZ_C Chain C, Photosystem I iron-sulfur center [Pisum sativum] >ALF03352.1 photosystem I subunit VII [Cucumis sativus var. hardwickii] >ALO21728.1 PsaC [Cucurbita argyrosperma] >ALO21809.1 PsaC [Cucurbita argyrosperma var. palmeri] >ALO21838.1 PsaC [Cucurbita argyrosperma subsp. sororia] >ALO21937.1 PsaC [Cucurbita cordata] >ALO21970.1 PsaC [Cucurbita digitata] >ALO22058.1 PsaC [Cucurbita ecuadorensis] >ALO22116.1 PsaC [Cucurbita ficifolia] >ALO22177.1 PsaC [Cucurbita foetidissima] >ALO22236.1 PsaC [Cucurbita lundelliana] >ALO22337.1 PsaC [Cucurbita maxima subsp. andreana] >ALO22462.1 PsaC [Cucurbita okeechobeensis] >ALO22480.1 PsaC [Cucurbita okeechobeensis subsp. martinezii] >ALO22568.1 PsaC [Cucurbita pepo subsp. fraterna] >ALO22662.1 PsaC [Cucurbita pepo subsp. ovifera] >ALO22670.1 PsaC [Cucurbita pepo var. ozarkana] >ALO22748.1 PsaC [Cucurbita pepo subsp. pepo] >ALO22818.1 PsaC [Cucurbita pepo var. texana] >ALO22927.1 PsaC [Cucurbita pedatifolia] >APW82514.1 photosystem I subunit VII [Citrullus lanatus subsp. vulgaris] >ASY96652.1 photosystem I subunit VII [Cucumis melo var. conomon] >ASY96739.1 photosystem I subunit VII [Cucumis melo var. makuwa] >ASY96826.1 photosystem I subunit VII [Cucumis melo var. momordica] >ASY96913.1 photosystem I subunit VII [Cucumis melo var. dudaim] >ASY97000.1 photosystem I subunit VII [Cucumis melo var. cantalupo] >ASY97174.1 photosystem I subunit VII [Cucumis melo var. inodorus] >ASY97348.1 photosystem I subunit VII [Cucumis melo var. flexuosus] >AVE15383.1 PsaC [Cucumis sativus var. sativus] >AXU40452.1 photosystem I subunit VII [Gomphogyne cissiformis var. villosa] >AXU40626.1 photosystem I subunit VII [Gomphogyne cissiformis var. cissiformis] >AXY95979.1 photosystem I protein C [Pisum sativum subsp. sativum] >QIT04100.1 photosystem I subunit C [Luffa aegyptiaca] >QJD26522.1 PsaC [Trichosanthes kirilowii var. japonica] >QJD26696.1 PsaC [Trichosanthes rosthornii] >QJF46437.1 photosystem I subunit VII [Cucumis melo] >QNM38583.1 photosystem I subunit VII [Lagenaria siceraria var. microcarpa] >QRV59982.1 photosystem I subunit VII [Melampyrum koreanum] >QZL38646.1 photosystem I subunit C [Citrullus naudinianus] >QZL38734.1 photosystem I subunit C [Citrullus ecirrhosus] >prf||1601522A photosystem I 8kD protein [Arachis hypogaea])

HSP 1 Score: 163 bits (413), Expect = 1.14e-50
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 81
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. NCBI nr
Match: YP_009528483.1 (photosystem I subunit VII [Capsicum baccatum var. praetermissum] >AYN60455.1 photosystem I subunit VII [Capsicum baccatum var. praetermissum])

HSP 1 Score: 162 bits (411), Expect = 2.30e-50
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQI STPRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASTPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 81
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. NCBI nr
Match: YP_009138437.1 (photosystem I subunit VII [Lathyrus davidii] >YP_009138512.1 photosystem I subunit VII [Lathyrus graminifolius] >YP_009138587.1 photosystem I subunit VII [Lathyrus japonicus] >YP_009138661.1 photosystem I subunit VII [Lathyrus littoralis] >YP_009138736.1 photosystem I subunit VII [Lathyrus ochroleucus] >YP_009138811.1 photosystem I subunit VII [Lathyrus palustris] >YP_009138960.1 photosystem I subunit VII [Lathyrus venosus] >AJE72920.1 photosystem I subunit VII [Lathyrus decaphyllus] >AIK20655.1 photosystem I subunit VII [Lathyrus davidii] >AIK20730.1 photosystem I subunit VII [Lathyrus graminifolius] >AIK20806.1 photosystem I subunit VII [Lathyrus japonicus] >AIK20881.1 photosystem I subunit VII [Lathyrus japonicus])

HSP 1 Score: 162 bits (410), Expect = 3.27e-50
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          M+HSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MAHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 81
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

[Close]

BLAST of IVF0024062 vs. NCBI nr
Match: YP_009334710.1 (photosystem I subunit VII [Camassia scilloides] >YP_009334794.1 photosystem I subunit VII [Chlorogalum pomeridianum] >AEX95917.1 photosystem I subunit VII [Camassia scilloides] >APO11603.1 photosystem I subunit VII [Camassia scilloides] >APO11687.1 photosystem I subunit VII [Chlorogalum pomeridianum])

HSP 1 Score: 162 bits (410), Expect = 3.27e-50
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 81
           FLSVR+YLWHETTRS+GL+Y
Sbjct: 61 DFLSVRVYLWHETTRSMGLSY 81

[Close]

BLAST of IVF0024062 vs. TAIR 10
Match: ATCG01060.1 (iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding )

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIVSTPRTKDCFGSKRCESDCPT 60
          MSHSVKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQI S PRT+DC G KRCES CPT
Sbjct: 1  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPT 60

Query: 61 TFLSVRIYLWHETTRSIGLAY 82
           FLSVR+YLWHETTRS+GLAY
Sbjct: 61 DFLSVRVYLWHETTRSMGLAY 81

The following BLAST results are available for this feature:

BLAST of IVF0024062 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42046	5.1e-40	88.89	Photosystem I iron-sulfur center OS=Cucumis sativus OX=3659 GN=psaC PE=1 SV=3	[more]
P10793	5.1e-40	88.89	Photosystem I iron-sulfur center OS=Pisum sativum OX=3888 GN=psaC PE=1 SV=3	[more]
A4GGE7	5.1e-40	88.89	Photosystem I iron-sulfur center OS=Phaseolus vulgaris OX=3885 GN=psaC PE=3 SV=1	[more]
A4QJG7	3.3e-39	87.65	Photosystem I iron-sulfur center OS=Aethionema cordifolium OX=434059 GN=psaC PE=...	[more]
A4QJQ1	3.3e-39	87.65	Photosystem I iron-sulfur center OS=Aethionema grandiflorum OX=72657 GN=psaC PE=...	[more]

BLAST of IVF0024062 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0F6NKX4	1.4e-37	90.12	Photosystem I iron-sulfur center OS=Lathyrus tingitanus OX=3862 GN=psaC PE=3 SV=...	[more]
A0A218KGA0	1.9e-37	88.89	Photosystem I iron-sulfur center OS=Cucumis sativus var. hardwickii OX=319220 GN...	[more]
D5MAH2	1.9e-37	88.89	Photosystem I iron-sulfur center OS=Pisum sativum OX=3888 GN=psaC PE=3 SV=1	[more]
A0A410HFC6	1.9e-37	88.89	Photosystem I iron-sulfur center OS=Trichosanthes kirilowii OX=3677 GN=psaC PE=3...	[more]
G3ETV0	1.9e-37	88.89	Photosystem I iron-sulfur center OS=Cucumis melo subsp. melo OX=412675 GN=psaC P...	[more]

BLAST of IVF0024062 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009141471.1	8.03e-51	90.12	photosystem I subunit VII [Lathyrus tingitanus] >AIL55997.1 photosystem I subuni...	[more]
YP_001122848.1	1.14e-50	88.89	photosystem I subunit VII [Phaseolus vulgaris] >YP_003587533.1 photosystem I pro...	[more]
YP_009528483.1	2.30e-50	88.89	photosystem I subunit VII [Capsicum baccatum var. praetermissum] >AYN60455.1 pho...	[more]
YP_009138437.1	3.27e-50	87.65	photosystem I subunit VII [Lathyrus davidii] >YP_009138512.1 photosystem I subun...	[more]
YP_009334710.1	3.27e-50	87.65	photosystem I subunit VII [Camassia scilloides] >YP_009334794.1 photosystem I su...	[more]

BLAST of IVF0024062 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01060.1	2.4e-40	87.65	iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.20		coord: 1..81 e-value: 6.5E-35 score: 120.5
None	No IPR available	PIRSR	PIRSR000068-1	PIRSR000068-1	coord: 8..65 e-value: 6.5E-5 score: 21.2
None	No IPR available	PANTHER	PTHR24960:SF79	PHOTOSYSTEM I IRON-SULFUR CENTER	coord: 1..70
None	No IPR available	PANTHER	PTHR24960	PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED	coord: 1..70
None	No IPR available	SUPERFAMILY	54862	4Fe-4S ferredoxins	coord: 7..64
IPR017491	Photosystem I protein PsaC	TIGRFAM	TIGR03048	TIGR03048	coord: 2..81 e-value: 9.8E-50 score: 164.7
IPR017491	Photosystem I protein PsaC	HAMAP	MF_01303	PSI_PsaC	coord: 1..81 score: 31.653013
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PFAM	PF00037	Fer4	coord: 6..26 e-value: 2.3E-7 score: 30.3
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PROSITE	PS51379	4FE4S_FER_2	coord: 1..31 score: 9.877371
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 11..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024062.1	IVF0024062.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding