IVF0023921 (gene) Melon (IVF77) v1

Overview


Name	IVF0023921
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cold-regulated protein
Location	chr06: 6682015 .. 6682461 (+)
RNA-Seq Expression	IVF0023921
Synteny	IVF0023921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTTATACGCTCCGTTGTGCTCCGGTAACTTAATCCCGGCGAATGGCTGTCGGAGTCGGCGTTCCGATCTGCATCGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCACCACAATGGCCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGATTCCGATTTGAGAGAATACGCAACTAATGCTGTTCCTTGACATGTTTTTCTTTTCCCAAAGTCCAATGTATATTAATAATGCATCTGATCAATTTAAGAGTAAAATTAATAGGCCAAATATATACCCTATGTCTCTTCTTATATTATATATATGTGTGTGTACCTATATGTGTGTAGCCAA

mRNA sequence

CCGTTATACGCTCCGTTGTGCTCCGGTAACTTAATCCCGGCGAATGGCTGTCGGAGTCGGCGTTCCGATCTGCATCGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCACCACAATGGCCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGATTCCGATTTGAGAGAATACGCAACTAATGCTGTTCCTTGACATGTTTTTCTTTTCCCAAAGTCCAATGTATATTAATAATGCATCTGATCAATTTAAGAGTAAAATTAATAGGCCAAATATATACCCTATGTCTCTTCTTATATTATATATATGTGTGTGTACCTATATGTGTGTAGCCAA

Coding sequence (CDS)

ATGGCTGTCGGAGTCGGCGTTCCGATCTGCATCGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCACCACAATGGCCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGATTCCGATTTGA

Protein sequence

MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIMAHPATVVYPSVSNAIPI

Homology

[Close]

BLAST of IVF0023921 vs. ExPASy TrEMBL
Match: A0A1S3C5C8 (uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.0e-37
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHH GRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSVSNAIPI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of IVF0023921 vs. ExPASy TrEMBL
Match: A0A0A0LA45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-36
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          M VG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHH GRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of IVF0023921 vs. ExPASy TrEMBL
Match: A0A6J1FA13 (uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC111442190 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-35
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          MAVG+GVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHH GRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHP TVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of IVF0023921 vs. ExPASy TrEMBL
Match: A0A6J1CQ64 (uncharacterized protein LOC111013291 OS=Momordica charantia OX=3673 GN=LOC111013291 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.4e-35
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFA AAVVEWPVGALV+CFRH  GRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of IVF0023921 vs. ExPASy TrEMBL
Match: A0A218XJX3 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027786 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          MA+GVGVPIC+ECGT SNPCRCKVVGPTLGFLAF  AAVVEWP+GALV+CFRH  GRRIM
Sbjct: 1  MALGVGVPICVECGTTSNPCRCKVVGPTLGFLAFTAAAVVEWPLGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSV+NAIPI
Sbjct: 61 AHPATVVYPSVTNAIPI 77

[Close]

BLAST of IVF0023921 vs. NCBI nr
Match: XP_008457074.1 (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 164 bits (414), Expect = 6.03e-51
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHH GRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 77
          AHPATVVYPSVSNAIPI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of IVF0023921 vs. NCBI nr
Match: XP_031737948.1 (uncharacterized protein LOC116402578 [Cucumis sativus])

HSP 1 Score: 161 bits (408), Expect = 4.97e-50
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          M VG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHH GRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 77
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of IVF0023921 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158 bits (399), Expect = 1.18e-48
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          MAVG+GVPIC+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHH GRRIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 77
          AHP TVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of IVF0023921 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 157 bits (398), Expect = 1.67e-48
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          MAVG+GVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHH GRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 77
          AHP TVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of IVF0023921 vs. NCBI nr
Match: XP_022143411.1 (uncharacterized protein LOC111013291 [Momordica charantia])

HSP 1 Score: 156 bits (395), Expect = 4.79e-48
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIM 60
          MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFA AAVVEWPVGALV+CFRH  GRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 77
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of IVF0023921 vs. TAIR 10
Match: AT3G03341.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 117.5 bits (293), Expect = 4.8e-27
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 7  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHNGRRIMAHPATV 66
          +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALV+ F+H  GRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAIPI 78
          VYP VS +IPI
Sbjct: 62 VYPKVSRSIPI 72

The following BLAST results are available for this feature:

BLAST of IVF0023921 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5C8	4.0e-37	98.70	uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=...	[more]
A0A0A0LA45	2.0e-36	94.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1	[more]
A0A6J1FA13	2.9e-35	89.61	uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A6J1CQ64	6.4e-35	92.21	uncharacterized protein LOC111013291 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A218XJX3	2.3e-32	87.01	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027786 PE=4 SV=1	[more]

BLAST of IVF0023921 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457074.1	6.03e-51	98.70	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
XP_031737948.1	4.97e-50	94.81	uncharacterized protein LOC116402578 [Cucumis sativus]	[more]
XP_023528466.1	1.18e-48	90.91	uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]	[more]
XP_022935253.1	1.67e-48	89.61	uncharacterized protein LOC111442190 [Cucurbita moschata]	[more]
XP_022143411.1	4.79e-48	92.21	uncharacterized protein LOC111013291 [Momordica charantia]	[more]

BLAST of IVF0023921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03341.1	4.8e-27	70.42	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023921.1	IVF0023921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane