IVF0023882 (gene) Melon (IVF77) v1

Overview


Name	IVF0023882
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-directed DNA methylation 4 isoform X2
Location	chr03: 16348505 .. 16348878 (-)
RNA-Seq Expression	IVF0023882
Synteny	IVF0023882

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGTGCGTCTTTCTCCCTTTTTCTGGTTTCCCTTTCTGCTATGGTTTACACTTTATGTTTTTTTAATCATTTCATATATTTTTTTTCAGGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGGTAAAAACCAAAAACCTTTTCCTTCTAGTTTAAAAATCTAAATTATATCTGATTTCTTTTATGATTGTCTTTTTTGGTTTCAGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCACTCAGAAAGTAA

mRNA sequence

ATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCACTCAGAAAGTAA

Coding sequence (CDS)

ATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCACTCAGAAAGTAA

Protein sequence

MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMMRSSPLRK

Homology

[Close]

BLAST of IVF0023882 vs. ExPASy Swiss-Prot
Match: Q8GYP3 (RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.9e-04
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1   MEIAEDDASYPFPLKQVDELDH--DRPSDSDYETDDSNAENNPCFDYPDEEELESESSNE 59
           M+I+ED +   FPL  V++ +   D   +SDY+++DSNAE++P  DYP+EEE E E  ++
Sbjct: 231 MDISEDSSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDHPKTDYPEEEEEEEEEDDD 290

[Close]

BLAST of IVF0023882 vs. ExPASy TrEMBL
Match: A0A1S3CIA5 (RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501292 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.6e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
          MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM
Sbjct: 22 MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 81

Query: 61 RSSPLRK 68
          RSSPLRK
Sbjct: 82 RSSPLRK 88

[Close]

BLAST of IVF0023882 vs. ExPASy TrEMBL
Match: A0A5A7T861 (RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00080 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
          MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM
Sbjct: 24 MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 83

Query: 61 RSSPLR 67
          RSSPLR
Sbjct: 84 RSSPLR 89

[Close]

BLAST of IVF0023882 vs. ExPASy TrEMBL
Match: A0A0A0K5Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EIAEDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES SSN+ +
Sbjct: 241 VEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDEL 300

Query: 61  RSS 64
             S
Sbjct: 301 EDS 303

[Close]

BLAST of IVF0023882 vs. ExPASy TrEMBL
Match: A0A1S4DWJ0 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.5e-19
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES+SSN+ +
Sbjct: 241 VEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDEL 300

Query: 61  RSS 64
             S
Sbjct: 301 EDS 303

[Close]

BLAST of IVF0023882 vs. ExPASy TrEMBL
Match: A0A5D3BU38 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00230 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.5e-19
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES+SSN+ +
Sbjct: 300 VEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDEL 359

Query: 61  RSS 64
             S
Sbjct: 360 EDS 362

[Close]

BLAST of IVF0023882 vs. NCBI nr
Match: XP_008463057.1 (PREDICTED: RNA-directed DNA methylation 4 isoform X2 [Cucumis melo])

HSP 1 Score: 132 bits (331), Expect = 2.54e-38
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
          MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM
Sbjct: 22 MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 81

Query: 61 RSSPLRK 67
          RSSPLRK
Sbjct: 82 RSSPLRK 88

[Close]

BLAST of IVF0023882 vs. NCBI nr
Match: KAA0039163.1 (RNA-directed DNA methylation 4 isoform X2 [Cucumis melo var. makuwa] >TYK26949.1 RNA-directed DNA methylation 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 2.00e-37
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
          MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM
Sbjct: 24 MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 83

Query: 61 RSSPLR 66
          RSSPLR
Sbjct: 84 RSSPLR 89

[Close]

BLAST of IVF0023882 vs. NCBI nr
Match: XP_004139832.1 (RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protein Csa_016181 [Cucumis sativus])

HSP 1 Score: 102 bits (255), Expect = 4.25e-24
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EIAEDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES SSN+ +
Sbjct: 241 VEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDEL 300

Query: 61  RSS 63
             S
Sbjct: 301 EDS 303

[Close]

BLAST of IVF0023882 vs. NCBI nr
Match: XP_008447118.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 101 bits (252), Expect = 1.13e-23
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES+SSN+ +
Sbjct: 239 VEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDEL 298

Query: 61  RSS 63
             S
Sbjct: 299 EDS 301

[Close]

BLAST of IVF0023882 vs. NCBI nr
Match: XP_008447116.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_008447117.1 PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_016900354.1 PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 101 bits (252), Expect = 1.15e-23
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES+SSN+ +
Sbjct: 241 VEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDEL 300

Query: 61  RSS 63
             S
Sbjct: 301 EDS 303

[Close]

BLAST of IVF0023882 vs. TAIR 10
Match: AT2G30280.1 (RNA-directed DNA methylation 4 )

HSP 1 Score: 44.7 bits (104), Expect = 3.5e-05
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1   MEIAEDDASYPFPLKQVDELDH--DRPSDSDYETDDSNAENNPCFDYPDEEELESESSNE 59
           M+I+ED +   FPL  V++ +   D   +SDY+++DSNAE++P  DYP+EEE E E  ++
Sbjct: 231 MDISEDSSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDHPKTDYPEEEEEEEEEDDD 290

The following BLAST results are available for this feature:

BLAST of IVF0023882 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYP3	4.9e-04	43.33	RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1	[more]

BLAST of IVF0023882 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CIA5	6.6e-28	100.00	RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350129...	[more]
A0A5A7T861	2.5e-27	100.00	RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0K5Q3	4.3e-19	82.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1	[more]
A0A1S4DWJ0	9.5e-19	80.95	RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3BU38	9.5e-19	80.95	RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of IVF0023882 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463057.1	2.54e-38	100.00	PREDICTED: RNA-directed DNA methylation 4 isoform X2 [Cucumis melo]	[more]
KAA0039163.1	2.00e-37	100.00	RNA-directed DNA methylation 4 isoform X2 [Cucumis melo var. makuwa] >TYK26949.1...	[more]
XP_004139832.1	4.25e-24	82.54	RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protei...	[more]
XP_008447118.1	1.13e-23	80.95	PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo]	[more]
XP_008447116.1	1.15e-23	80.95	PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_008...	[more]

BLAST of IVF0023882 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30280.1	3.5e-05	43.33	RNA-directed DNA methylation 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013883	Transcription factor Iwr1 domain	PFAM	PF08574	Iwr1	coord: 11..49 e-value: 3.9E-6 score: 27.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	PANTHER	PTHR31934	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN	coord: 1..57
None	No IPR available	PANTHER	PTHR31934:SF2	RNA-DIRECTED DNA METHYLATION 4	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023882.2	IVF0023882.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006306	DNA methylation
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity