IVF0023705 (gene) Melon (IVF77) v1

Overview
NameIVF0023705
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionFlagellar basal-body rod protein FlgB
Locationchr11: 9635232 .. 9635585 (+)
RNA-Seq ExpressionIVF0023705
SyntenyIVF0023705
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAAACAAAAATGTTGATCAGTCTGAAAAGAAAAAAGCACTATCTACGGGCAATCCATCTGAAAGGGATATCGAAGTTGTATGCTCCGACAATCCTGTGTCGAAGCAGGCACAACTTTCATCCTCATTACACAATGAAGCACTACCTAGTTCAAGTGAGGTTTTTGGAACAGAAGGGTGGAACCCTTTCAACTTCAAGGGCAAAGAGATATCCATGACGGATGAAAATAATATTGGAATGATGTTGAAATTGCTCCTTGAAGAAAGTAACAAAAGAAAAAAAGTGAGAGAAGAAGTTGAAAAGAAAAAGAAAGAAGATGACAAAAAAGCGAGGAAAGCAAGGATTTAG

mRNA sequence

ATGGCCAAAAACAAAAATGTTGATCAGTCTGAAAAGAAAAAAGCACTATCTACGGGCAATCCATCTGAAAGGGATATCGAAGTTGTATGCTCCGACAATCCTGTGTCGAAGCAGGCACAACTTTCATCCTCATTACACAATGAAGCACTACCTAGTTCAAGTGAGGTTTTTGGAACAGAAGGGTGGAACCCTTTCAACTTCAAGGGCAAAGAGATATCCATGACGGATGAAAATAATATTGGAATGATGTTGAAATTGCTCCTTGAAGAAAGTAACAAAAGAAAAAAAGTGAGAGAAGAAGTTGAAAAGAAAAAGAAAGAAGATGACAAAAAAGCGAGGAAAGCAAGGATTTAG

Coding sequence (CDS)

ATGGCCAAAAACAAAAATGTTGATCAGTCTGAAAAGAAAAAAGCACTATCTACGGGCAATCCATCTGAAAGGGATATCGAAGTTGTATGCTCCGACAATCCTGTGTCGAAGCAGGCACAACTTTCATCCTCATTACACAATGAAGCACTACCTAGTTCAAGTGAGGTTTTTGGAACAGAAGGGTGGAACCCTTTCAACTTCAAGGGCAAAGAGATATCCATGACGGATGAAAATAATATTGGAATGATGTTGAAATTGCTCCTTGAAGAAAGTAACAAAAGAAAAAAAGTGAGAGAAGAAGTTGAAAAGAAAAAGAAAGAAGATGACAAAAAAGCGAGGAAAGCAAGGATTTAG

Protein sequence

MAKNKNVDQSEKKKALSTGNPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTEGWNPFNFKGKEISMTDENNIGMMLKLLLEESNKRKKVREEVEKKKKEDDKKARKARI
Homology
BLAST of IVF0023705 vs. ExPASy TrEMBL
Match: A0A5A7VAE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001420 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-21
Identity = 63/97 (64.95%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 20  NPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTEGWNPFNFKGKEISMTDENN 79
           NP +RD EVV S  PVS+QAQL+SS  N+ALPSS EVFGT+GWNPF+FK KE+ MT+E N
Sbjct: 46  NPFKRDTEVVHSHGPVSEQAQLASSSLNKALPSSREVFGTKGWNPFSFKSKEVLMTNE-N 105

Query: 80  IGMMLKLLLEESNKRKKVREEVEKKKKEDDKKARKAR 117
           I  +  LL+EESNKR + +EEVEKK+KED++KARK +
Sbjct: 106 IDFITNLLMEESNKRAETKEEVEKKRKEDEEKARKEK 141

BLAST of IVF0023705 vs. ExPASy TrEMBL
Match: A0A5D3DRG2 (Flagellar basal-body rod protein FlgB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001040 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-20
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1  MAKNKNVDQSEKKKALSTGNPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTE 60
          M  NKNVDQSEKK ALS  N SERDI+++C D  + KQAQL+SS HNE LP SSEVFGT+
Sbjct: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60

Query: 61 GWNPFNFKGKEISMTDEN 79
          GWNPFN  GKE+ + DEN
Sbjct: 61 GWNPFNLNGKEMPIIDEN 78

BLAST of IVF0023705 vs. ExPASy TrEMBL
Match: A0A5D3CGX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00340 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-18
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 1  MAKNKNVDQSEKKKALSTGNPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTE 60
          M + K  +QSEKK+A +T +    DI++V SD PVS+Q QL  + HN+ALPSSS VFGTE
Sbjct: 1  MIEKKASEQSEKKEASNTADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTE 60

Query: 61 GWNPFNFKGKEISMTDENNIGMMLKLLL 89
          GWNPFNFKGK I M D+ NI MMLKLLL
Sbjct: 61 GWNPFNFKGKVIPMIDD-NIAMMLKLLL 87

BLAST of IVF0023705 vs. ExPASy TrEMBL
Match: A0A5A7TK20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G00550 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 0

Query: 1   MAKNKNVDQSEKKKALSTGNPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTE 60
           MAK+K+ DQS KK+  +  +PS+ DIE+V S++P+S+QAQL S  H+EALP + EVFGT+
Sbjct: 1   MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61  GWNPFNFKGKEI---SMTDENNIGMMLKLLLEESNKRKKVREEVEKKK 106
           GWN F+FKGKE    ++ +  ++G     L  ++ K KK R+   KKK
Sbjct: 61  GWNSFSFKGKEFCKEALKEIEDLGH----LENDAPKPKKKRKVTMKKK 104

BLAST of IVF0023705 vs. ExPASy TrEMBL
Match: A0A0A0KJ97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G026440 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 1   MAKNKNVDQSEKKKALSTGNPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTE 60
           MAKN   +  EKKK         ++ +VVC D PVS+QAQ  S+   E + +SSEV  TE
Sbjct: 1   MAKNNESEHFEKKKV-------RKNTKVVCFDGPVSEQAQHDSTPQTETMRNSSEVLETE 60

Query: 61  GWNPFNFKGKEISMTDENNIGMMLKLLLEESNKRKKVREEVEKKKKE 108
           GWNPF F+  EIS+TDE NIG   K+LL++ N+R + +E VE+K+KE
Sbjct: 61  GWNPFKFQWMEISITDE-NIG---KMLLDKRNRRGRAKEGVEEKQKE 96

BLAST of IVF0023705 vs. NCBI nr
Match: KAA0062631.1 (hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 1.07e-27
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 0

Query: 20  NPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTEGWNPFNFKGKEISMTDENN 79
           NP +RD EVV S  PVS+QAQL+SS  N+ALPSS EVFGT+GWNPF+FK KE+ MT+EN 
Sbjct: 46  NPFKRDTEVVHSHGPVSEQAQLASSSLNKALPSSREVFGTKGWNPFSFKSKEVLMTNEN- 105

Query: 80  IGMMLKLLLEESNKRKKVREEVEKKKKEDDKKARK 114
           I  +  LL+EESNKR + +EEVEKK+KED++KARK
Sbjct: 106 IDFITNLLMEESNKRAETKEEVEKKRKEDEEKARK 139

BLAST of IVF0023705 vs. NCBI nr
Match: TYK25880.1 (flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 2.41e-27
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1  MAKNKNVDQSEKKKALSTGNPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTE 60
          M  NKNVDQSEKK ALS  N SERDI+++C D  + KQAQL+SS HNE LP SSEVFGT+
Sbjct: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60

Query: 61 GWNPFNFKGKEISMTDEN 78
          GWNPFN  GKE+ + DEN
Sbjct: 61 GWNPFNLNGKEMPIIDEN 78

BLAST of IVF0023705 vs. NCBI nr
Match: TYK11051.1 (hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 5.61e-25
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 1  MAKNKNVDQSEKKKALSTGNPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTE 60
          M + K  +QSEKK+A +T +    DI++V SD PVS+Q QL  + HN+ALPSSS VFGTE
Sbjct: 1  MIEKKASEQSEKKEASNTADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTE 60

Query: 61 GWNPFNFKGKEISMTDENNIGMMLKLLL 88
          GWNPFNFKGK I M D+N I MMLKLLL
Sbjct: 61 GWNPFNFKGKVIPMIDDN-IAMMLKLLL 87

BLAST of IVF0023705 vs. NCBI nr
Match: KAA0041719.1 (hypothetical protein E6C27_scaffold67G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 2.35e-18
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 0

Query: 1  MAKNKNVDQSEKKKALSTGNPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTE 60
          MAK+K+ DQS KK+  +  +PS+ DIE+V S++P+S+QAQL S  H+EALP + EVFGT+
Sbjct: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61 GWNPFNFKGKE 71
          GWN F+FKGKE
Sbjct: 61 GWNSFSFKGKE 71

BLAST of IVF0023705 vs. NCBI nr
Match: TYK20947.1 (hypothetical protein E5676_scaffold284G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 3.77e-18
Identity = 43/74 (58.11%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 1  MAKNKNVDQSEKKKALSTGNPSERDIEVVCSDNPVSKQAQLSSSLHNEALPSSSEVFGTE 60
          MAK+K+ DQS KK+  +  +PS+ DIE+V S++P+S+QAQL S  H+EALP + EVFGT+
Sbjct: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61 GWNPFNFKGKEISM 74
          GWN F+FKGKE  M
Sbjct: 61 GWNSFSFKGKEFGM 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VAE24.7e-2164.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DRG25.2e-2067.95Flagellar basal-body rod protein FlgB OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3CGX22.8e-1862.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TK202.3e-1247.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KJ971.5e-1148.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G026440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0062631.11.07e-2766.32hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa][more]
TYK25880.12.41e-2767.95flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa][more]
TYK11051.15.61e-2562.50hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa][more]
KAA0041719.12.35e-1859.15hypothetical protein E6C27_scaffold67G00550 [Cucumis melo var. makuwa][more]
TYK20947.13.77e-1858.11hypothetical protein E5676_scaffold284G00950 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023705.1IVF0023705.1mRNA