IVF0023484 (gene) Melon (IVF77) v1

Overview
NameIVF0023484
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr02: 12386475 .. 12387275 (+)
RNA-Seq ExpressionIVF0023484
SyntenyIVF0023484
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTGTACAACCCAAAAGGCCGAATGGCATCACATGGCAAGGCGGCAAGCAGCAAAGTAGGCCAACTCCCAACGCACATCACACGGATCCCACATCGCTTAATTCTCCCTTTTCCACTTTCCCGACAACTGTCTTCCCTTCAACCTCCCCTTTAATTTCCTCACTCCCTATATAAACCCCTTCTTCTCCCTTCCCCTTCTTTCCCTCAAACCCCCTCCGGCACCGGCCATTCCCCCACGCTCTTCTCCATGGCCGACGCCTTTCTCAGATGCGTCTACCACGGCTGCATCGCTGGCCCCGACGCCGGGATCGACCGCCGTCCTTACCATAAGAACTGCAGCTGCGCTCTTCACGACCGAGATAATAGACGCTGTTCTCATTCCTTGTCTAAACATAAGTCCGTCTCCTACCCGATCAGACGAGCCTGGAGTGAGGGATGTTTGGCTATGGTTGCTGCTTCTGCGGCTTCTGGCGTTTCTTCTCCTTCTTCGCCGTCCATGGATCAGGTCGAAAGCCTTGGATCTTACAAGAGATGAGCCGTATTGTCGTTCTGATTTTTGTTTCTTATTTTTTGTTTTGTTGATCTAATTTGATTTTAGTTTTGTAATATATATCTTATGTGGAATTCTTGATTTGGAAAGAGTGAAGTGATGAATGTAGATTTTAATTACTTGACTCTGTTTCTTCTTCTAATCTTTGTTGATTGATTGATTGATTTAATGGAATGGATTTTTGTTCTTGATTTGGGTGAAATGATTCTCGTTTGAAAATCATTTCATCTATTACAAATTGAGGTTGAG

mRNA sequence

GTCTTGTACAACCCAAAAGGCCGAATGGCATCACATGGCAAGGCGGCAAGCAGCAAAGTAGGCCAACTCCCAACGCACATCACACGGATCCCACATCGCTTAATTCTCCCTTTTCCACTTTCCCGACAACTGTCTTCCCTTCAACCTCCCCTTTAATTTCCTCACTCCCTATATAAACCCCTTCTTCTCCCTTCCCCTTCTTTCCCTCAAACCCCCTCCGGCACCGGCCATTCCCCCACGCTCTTCTCCATGGCCGACGCCTTTCTCAGATGCGTCTACCACGGCTGCATCGCTGGCCCCGACGCCGGGATCGACCGCCGTCCTTACCATAAGAACTGCAGCTGCGCTCTTCACGACCGAGATAATAGACGCTGTTCTCATTCCTTGTCTAAACATAAGTCCGTCTCCTACCCGATCAGACGAGCCTGGAGTGAGGGATGTTTGGCTATGGTTGCTGCTTCTGCGGCTTCTGGCGTTTCTTCTCCTTCTTCGCCGTCCATGGATCAGGTCGAAAGCCTTGGATCTTACAAGAGATGAGCCGTATTGTCGTTCTGATTTTTGTTTCTTATTTTTTGTTTTGTTGATCTAATTTGATTTTAGTTTTGTAATATATATCTTATGTGGAATTCTTGATTTGGAAAGAGTGAAGTGATGAATGTAGATTTTAATTACTTGACTCTGTTTCTTCTTCTAATCTTTGTTGATTGATTGATTGATTTAATGGAATGGATTTTTGTTCTTGATTTGGGTGAAATGATTCTCGTTTGAAAATCATTTCATCTATTACAAATTGAGGTTGAG

Coding sequence (CDS)

ATGGCCGACGCCTTTCTCAGATGCGTCTACCACGGCTGCATCGCTGGCCCCGACGCCGGGATCGACCGCCGTCCTTACCATAAGAACTGCAGCTGCGCTCTTCACGACCGAGATAATAGACGCTGTTCTCATTCCTTGTCTAAACATAAGTCCGTCTCCTACCCGATCAGACGAGCCTGGAGTGAGGGATGTTTGGCTATGGTTGCTGCTTCTGCGGCTTCTGGCGTTTCTTCTCCTTCTTCGCCGTCCATGGATCAGGTCGAAAGCCTTGGATCTTACAAGAGATGA

Protein sequence

MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWSEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR
Homology
BLAST of IVF0023484 vs. ExPASy TrEMBL
Match: A0A1S3B9X6 (uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.1e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 96
          SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 95

BLAST of IVF0023484 vs. ExPASy TrEMBL
Match: A0A0A0LWK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.8e-40
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADA LRCVY+GCI  PDA IDRRPYHKNCSCALHDRDN+RCSHS+SKHKSVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 96
          SEGCLAMV   AASG+SSPSSPSMDQVESLGSYKR
Sbjct: 61 SEGCLAMV---AASGISSPSSPSMDQVESLGSYKR 92

BLAST of IVF0023484 vs. ExPASy TrEMBL
Match: A0A061GQ94 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.7e-21
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD   R +Y GCIAG D GI+RRPYH+NCSCALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSPSSPSMDQVESLGSYK 95
          EGCLAM AAS  S  S  SSP+   V   G ++
Sbjct: 66 EGCLAMAAASCHS--SPSSSPAFSGVHGAGKHR 96

BLAST of IVF0023484 vs. ExPASy TrEMBL
Match: B9SC26 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0702130 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 0

Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD F R VY GC++G D GI+RRPYH+NC CALH++    C H +SK K+VSYPIRRAWS
Sbjct: 6  ADGFFRYVYDGCLSGGDMGIERRPYHRNCRCALHNKSKDNCPHGMSKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSP-SSPSM 85
          EGCL++ A +A S  SSP SSPS+
Sbjct: 66 EGCLSLAAVAANSCHSSPSSSPSL 89

BLAST of IVF0023484 vs. ExPASy TrEMBL
Match: A0A6J0ZQ85 (uncharacterized protein LOC110411242 OS=Herrania umbratica OX=108875 GN=LOC110411242 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 54/93 (58.06%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD   R +Y GCIAG D GI+RRPYH+NC CALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRPLYEGCIAGCDIGIERRPYHRNCRCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSPSSPSMDQVESLGSYK 95
          EGCLAM AAS  S  S  SSP+   V   G ++
Sbjct: 66 EGCLAMAAASCHS--SPSSSPAFSGVHGAGKHQ 96

BLAST of IVF0023484 vs. NCBI nr
Match: XP_008443899.1 (PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo])

HSP 1 Score: 196 bits (497), Expect = 4.76e-63
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 95
          SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 95

BLAST of IVF0023484 vs. NCBI nr
Match: KAE8653037.1 (hypothetical protein Csa_019637 [Cucumis sativus])

HSP 1 Score: 162 bits (409), Expect = 1.35e-49
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 0

Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADA LRCVY+GCI  PDA IDRRPYHKNCSCALHDRDN+RCSHS+SKHKSVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLG 91
          SEGCLAMVAAS   G+SSPSSPSMDQ+E +G
Sbjct: 61 SEGCLAMVAAS---GISSPSSPSMDQIEGVG 88

BLAST of IVF0023484 vs. NCBI nr
Match: KAG6587850.1 (hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (345), Expect = 7.09e-40
Identity = 73/96 (76.04%), Postives = 78/96 (81.25%), Query Frame = 0

Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADA    VYHGCIA  DA I RRPYHKNC CALHDRDNRRCSHS+SKH +VSYPIRRAW
Sbjct: 1  MADALFGSVYHGCIATCDAEIARRPYHKNCGCALHDRDNRRCSHSMSKHSTVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSS-PSMDQVESLGSYKR 95
          SEGCLAM AAS  SG+SSPSS PSM+  E LGS +R
Sbjct: 61 SEGCLAMAAASG-SGISSPSSSPSMES-EGLGSNRR 94

BLAST of IVF0023484 vs. NCBI nr
Match: XP_007013703.2 (PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao])

HSP 1 Score: 110 bits (276), Expect = 4.13e-29
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD   R +Y GCIAG D GI+RRPYH+NCSCALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSPSSPSMDQVESLGSYK 94
          EGCLAM AAS  S  SS  SP+   V   G ++
Sbjct: 66 EGCLAMAAASCHSSPSS--SPAFSGVHGAGKHR 96

BLAST of IVF0023484 vs. NCBI nr
Match: EOY31322.1 (Uncharacterized protein TCM_038276 [Theobroma cacao])

HSP 1 Score: 110 bits (276), Expect = 4.13e-29
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD   R +Y GCIAG D GI+RRPYH+NCSCALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSPSSPSMDQVESLGSYK 94
          EGCLAM AAS  S  SS  SP+   V   G ++
Sbjct: 66 EGCLAMAAASCHSSPSS--SPAFSGVHGAGKHR 96

BLAST of IVF0023484 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 0

Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDR-------DNRRCSHSLSKH---KS 61
          AD   R ++ GCI+G D+ I+RRPYHKNC CALHD+        N+R   S  +H   +S
Sbjct: 3  ADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSES 62

Query: 62 VSYPIRRAWSEGCLAMV----AASAASGVSSPSSPS 84
          +S+PIRR+WSEG +  +    ++S++S + S SS S
Sbjct: 63 ISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSS 98

BLAST of IVF0023484 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 3   DAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKH---KSVSYPIRRA 62
           D   R ++ GCI+  D+ I RRPYHKNC CALH+R     S +  +H   + V +PI+R+
Sbjct: 7   DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 63  WSEG-CLAMVAASAASGVSSPSSPSMDQVESLGS 93
           WSEG  LA+  AS++S  +  S  S   + +L S
Sbjct: 67  WSEGNSLALHLASSSSSSNLQSLSSSSSISTLAS 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B9X63.1e-47100.00uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=... [more]
A0A0A0LWK02.8e-4088.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1[more]
A0A061GQ941.7e-2159.14Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1[more]
B9SC261.1e-2061.90Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0702130 PE=4 SV=1[more]
A0A6J0ZQ851.4e-2058.06uncharacterized protein LOC110411242 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
Match NameE-valueIdentityDescription
XP_008443899.14.76e-63100.00PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo][more]
KAE8653037.11.35e-4984.62hypothetical protein Csa_019637 [Cucumis sativus][more]
KAG6587850.17.09e-4076.04hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_007013703.24.13e-2959.14PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao][more]
EOY31322.14.13e-2959.14Uncharacterized protein TCM_038276 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
AT2G46490.11.5e-1443.75unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G35110.11.9e-1241.49unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..88
NoneNo IPR availablePANTHERPTHR35121HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATEDcoord: 2..85
NoneNo IPR availablePANTHERPTHR35121:SF2BNAC04G52100D PROTEINcoord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023484.1IVF0023484.1mRNA