IVF0023468 (gene) Melon (IVF77) v1

Overview


Name	IVF0023468
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic
Location	chr07: 1193087 .. 1194648 (-)
RNA-Seq Expression	IVF0023468
Synteny	IVF0023468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGATATTAAATCCCCAATAACCGTATAAGCTAAGCTCGAGAAAGTGCAAATATTTTGCGATAGAATTCGCTTGGTGGAGCAACGTCTTCTCTTATCTACCACACCAACACACTGAAGTTGAGAAACAAAACCCCCAATCTATACCAACAACCGAAACCGTCACCGGAGCAGCAACGAGAACCACCATGGCGGCGGCTGCAGTACCGTCTACCACCACCGTCCACATTCGTCGAAGTAACTTCTTCTCTCCCACCTCAAAACCCACCGCCATATCCTTCAATCCCATCACTTCCCGCTCAAAGCCGCTCAAGTTCATCATCAGAAACTCCAACGAATCATCGGCGGAGACTGCCACAACGGAGACGGCGACTGAGATGGAGGAAGAAAGCTCACTCCAAGCCTCCGACGAATCGCCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCGTAATGTTATCCACCCTAATCTCTCTGCCTATTTAGTTTCTCAAGTTTGCTTAATTGTCTCTTTAACTTTGTTCTGGTAATGCAGCAATTACAGATGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTAATTTAATTCAATTTAATCAATTCGCTAAAATAAAAACCCTATTTCCGCGAGAATCTTCTTTGATCTTGATCAGCCCTGATTTGTTACAGGTTCCGATTGCATACAACATCAAGGTTCAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGTCAGTTGAAACCAAGAAACAAAAAAAAAAATCCTAAATTATATTACGAGATTGAATTGCGAGTAATGATATTGAAGAATGATTACAGGAATCGTACATGATATTATCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGGCGAGAATCGGAGAACCAGACAAATATTCATGGCCTTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGTACTCTCCGTTTGCCCTCTTTCCCGCCACAATCTAACCGCAATGAATGTGTAAAATCATCGTTGATTTTGGACTGGCAGGAACCAGAAGACGAAGGACCGACGAGATTGGTGGGCTACTTCTTCTTGGGGTGGTTCGTTCTATCCATCGTGTTATCTATTGCTCTGAATCTCTAGAAACCGCCATTAATGGTGTCTGTAGACTAAGAAGAACGGTCTGTCTTGAAGAAGAACACGAGAACGAAAAGCCCAGCCCGCCGGTTATTTTATGGAACTCGGAATTTGGGCCCTTTAAATCGGGCCTCTATTGATATTGGGCCTTGTTAATGGTAAGTTTCATTTGTCTTGAGCCCAAGTTTCTAGCCCATAATAAGTATCCATAGTTATCCTCTGAAAAATGATTTTATATTTGATGAATCCCTTTGTGAATATAACATTTTCTTTTTCCATCTTCACTTATCGTTGAAAGGATGTCATAATTTGAAGTGATAGACATTGACTTAAGGATATCACTAATATGTTTGTTATTGTTGGTGAAGC

mRNA sequence

ATTTGATATTAAATCCCCAATAACCGTATAAGCTAAGCTCGAGAAAGTGCAAATATTTTGCGATAGAATTCGCTTGGTGGAGCAACGTCTTCTCTTATCTACCACACCAACACACTGAAGTTGAGAAACAAAACCCCCAATCTATACCAACAACCGAAACCGTCACCGGAGCAGCAACGAGAACCACCATGGCGGCGGCTGCAGTACCGTCTACCACCACCGTCCACATTCGTCGAAGTAACTTCTTCTCTCCCACCTCAAAACCCACCGCCATATCCTTCAATCCCATCACTTCCCGCTCAAAGCCGCTCAAGTTCATCATCAGAAACTCCAACGAATCATCGGCGGAGACTGCCACAACGGAGACGGCGACTGAGATGGAGGAAGAAAGCTCACTCCAAGCCTCCGACGAATCGCCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGATGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCATACAACATCAAGGTTCAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGAATCGTACATGATATTATCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGGCGAGAATCGGAGAACCAGACAAATATTCATGGCCTTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCAGAAGACGAAGGACCGACGAGATTGGTGGGCTACTTCTTCTTGGGGTGGTTCGTTCTATCCATCGTGTTATCTATTGCTCTGAATCTCTAGAAACCGCCATTAATGGTGTCTGTAGACTAAGAAGAACGGTCTGTCTTGAAGAAGAACACGAGAACGAAAAGCCCAGCCCGCCGGTTATTTTATGGAACTCGGAATTTGGGCCCTTTAAATCGGGCCTCTATTGATATTGGGCCTTGTTAATGGTAAGTTTCATTTGTCTTGAGCCCAAGTTTCTAGCCCATAATAAGTATCCATAGTTATCCTCTGAAAAATGATTTTATATTTGATGAATCCCTTTGTGAATATAACATTTTCTTTTTCCATCTTCACTTATCGTTGAAAGGATGTCATAATTTGAAGTGATAGACATTGACTTAAGGATATCACTAATATGTTTGTTATTGTTGGTGAAGC

Coding sequence (CDS)

ATGGCGGCGGCTGCAGTACCGTCTACCACCACCGTCCACATTCGTCGAAGTAACTTCTTCTCTCCCACCTCAAAACCCACCGCCATATCCTTCAATCCCATCACTTCCCGCTCAAAGCCGCTCAAGTTCATCATCAGAAACTCCAACGAATCATCGGCGGAGACTGCCACAACGGAGACGGCGACTGAGATGGAGGAAGAAAGCTCACTCCAAGCCTCCGACGAATCGCCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGATGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCATACAACATCAAGGTTCAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGAATCGTACATGATATTATCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGGCGAGAATCGGAGAACCAGACAAATATTCATGGCCTTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCAGAAGACGAAGGACCGACGAGATTGGTGGGCTACTTCTTCTTGGGGTGGTTCGTTCTATCCATCGTGTTATCTATTGCTCTGAATCTCTAG

Protein sequence

MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL

Homology

[Close]

BLAST of IVF0023468 vs. ExPASy Swiss-Prot
Match: Q84VQ4 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhU PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.5e-52
Identity = 110/217 (50.69%), Postives = 144/217 (66.36%), Query Frame = 0


Query: 4   AAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTETATE 63
           + +   + VHI   +         +  + P  +  + +    RNS+E SAE  T   ++ 
Sbjct: 5   STITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGGSST 64

Query: 64  MEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVQ 123
             +E    A  ESPSLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  +V+
Sbjct: 65  AVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKERVK 124

Query: 124 ELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADITQIQ 183
           ELK QGL+EE+L  K++L+KESY ILS+VEERRMYDWSLAR  + ++Y WPFE DI +  
Sbjct: 125 ELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIMEPS 184

Query: 184 TQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALN 221
            + PPP+EPED GPTR++GYF   W VL + LS+A N
Sbjct: 185 REEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

[Close]

BLAST of IVF0023468 vs. ExPASy TrEMBL
Match: A0A5A7VF89 (NAD(P)H-quinone oxidoreductase subunit U OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001750 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 9.5e-116
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET 60
           MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET
Sbjct: 1   MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET 60

Query: 61  ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120
           ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 61  ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120

Query: 121 KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180
           KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 121 KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180

Query: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 222
           QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL
Sbjct: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of IVF0023468 vs. ExPASy TrEMBL
Match: A0A1S3BUP1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493698 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 9.5e-116
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET 60
           MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET
Sbjct: 1   MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET 60

Query: 61  ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120
           ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 61  ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120

Query: 121 KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180
           KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 121 KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180

Query: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 222
           QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL
Sbjct: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of IVF0023468 vs. ExPASy TrEMBL
Match: A0A0A0L072 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G647480 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.0e-110
Identity = 213/221 (96.38%), Postives = 215/221 (97.29%), Query Frame = 0


Query: 1   MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET 60
           MAAAAVPSTTTVHIRRSNF SPT+K T ISFNPITSRSKPLKFIIRNSNESSAETATTET
Sbjct: 1   MAAAAVPSTTTVHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATTET 60

Query: 61  ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120
           ATE E ESSLQAS ESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 61  ATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120

Query: 121 KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180
           KV+ELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 121 KVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180

Query: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 222
           QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL
Sbjct: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of IVF0023468 vs. ExPASy TrEMBL
Match: A0A6J1IZ95 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481243 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.6e-99
Identity = 196/223 (87.89%), Postives = 206/223 (92.38%), Query Frame = 0


Query: 2   AAAAVPSTTT---VHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 61
           AAAAVPSTT+   VHIRRSNF  PTSK TAI FN ITS  KPLKF IRNSN+SSAET TT
Sbjct: 3   AAAAVPSTTSTTVVHIRRSNFLCPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETVTT 62

Query: 62  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121
           +TA+E E ESSL+ASD S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122

Query: 122 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181
           NIKV+ELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 123 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182

Query: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 222
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of IVF0023468 vs. ExPASy TrEMBL
Match: A0A6J1FIT6 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445859 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.7e-99
Identity = 195/223 (87.44%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 2   AAAAVPSTTT---VHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 61
           AAAAVPSTT+   VHIRRSNF SPTSK TAI FN ITS  KPLKF +RNSN+SSAET TT
Sbjct: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62

Query: 62  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121
           +TA+E E ESSL+ASD S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122

Query: 122 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181
           NIKV+ELKSQGLEEEEL+QKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 123 NIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182

Query: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 222
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of IVF0023468 vs. NCBI nr
Match: XP_008452780.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis melo] >KAA0064535.1 NAD(P)H-quinone oxidoreductase subunit U [Cucumis melo var. makuwa] >TYK20055.1 NAD(P)H-quinone oxidoreductase subunit U [Cucumis melo var. makuwa])

HSP 1 Score: 424 bits (1089), Expect = 3.23e-149
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET 60
           MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET
Sbjct: 1   MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET 60

Query: 61  ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120
           ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 61  ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120

Query: 121 KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180
           KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 121 KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180

Query: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221
           QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL
Sbjct: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of IVF0023468 vs. NCBI nr
Match: XP_011654197.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis sativus] >KGN55375.1 hypothetical protein Csa_012263 [Cucumis sativus])

HSP 1 Score: 406 bits (1043), Expect = 3.33e-142
Identity = 213/221 (96.38%), Postives = 215/221 (97.29%), Query Frame = 0


Query: 1   MAAAAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTET 60
           MAAAAVPSTTTVHIRRSNF SPT+K T ISFNPITSRSKPLKFIIRNSNESSAETATTET
Sbjct: 1   MAAAAVPSTTTVHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATTET 60

Query: 61  ATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120
           ATE E ESSLQAS ESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 61  ATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 120

Query: 121 KVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180
           KV+ELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT
Sbjct: 121 KVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 180

Query: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221
           QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL
Sbjct: 181 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of IVF0023468 vs. NCBI nr
Match: XP_038898705.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Benincasa hispida])

HSP 1 Score: 394 bits (1012), Expect = 1.97e-137
Identity = 208/224 (92.86%), Postives = 212/224 (94.64%), Query Frame = 0


Query: 1   MAAAAVPSTTT---VHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETAT 60
           MAAAAVPSTTT   +HIRRSNF SPT+K TAISFNPITS  KPLKFIIRN NESSAETAT
Sbjct: 1   MAAAAVPSTTTTTTIHIRRSNFLSPTAKTTAISFNPITSHPKPLKFIIRNYNESSAETAT 60

Query: 61  TETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIA 120
           TET TE E ESSL+ASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIA
Sbjct: 61  TETTTEPEAESSLKASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIA 120

Query: 121 YNIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEA 180
           YNIKV+ELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEA
Sbjct: 121 YNIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEA 180

Query: 181 DITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221
           DITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 181 DITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSAVLSIALNL 224

[Close]

BLAST of IVF0023468 vs. NCBI nr
Match: XP_023524366.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 371 bits (952), Expect = 2.83e-128
Identity = 197/223 (88.34%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 2   AAAAVPSTTT---VHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 61
           AAAAVPSTT+   VHIRRSNF SPTSK TAI FN ITS  KPLKF IRNSN+SSAET TT
Sbjct: 3   AAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETVTT 62

Query: 62  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121
           +TA+E E ESSL+ASD S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122

Query: 122 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181
           NIKV+ELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 123 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182

Query: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of IVF0023468 vs. NCBI nr
Match: XP_022982411.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita maxima])

HSP 1 Score: 369 bits (947), Expect = 1.64e-127
Identity = 196/223 (87.89%), Postives = 206/223 (92.38%), Query Frame = 0


Query: 2   AAAAVPSTTT---VHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 61
           AAAAVPSTT+   VHIRRSNF  PTSK TAI FN ITS  KPLKF IRNSN+SSAET TT
Sbjct: 3   AAAAVPSTTSTTVVHIRRSNFLCPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETVTT 62

Query: 62  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121
           +TA+E E ESSL+ASD S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122

Query: 122 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181
           NIKV+ELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 123 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182

Query: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of IVF0023468 vs. TAIR 10
Match: AT5G21430.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.7e-53
Identity = 110/217 (50.69%), Postives = 144/217 (66.36%), Query Frame = 0


Query: 4   AAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTETATE 63
           + +   + VHI   +         +  + P  +  + +    RNS+E SAE  T   ++ 
Sbjct: 5   STITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGGSST 64

Query: 64  MEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVQ 123
             +E    A  ESPSLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  +V+
Sbjct: 65  AVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKERVK 124

Query: 124 ELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADITQIQ 183
           ELK QGL+EE+L  K++L+KESY ILS+VEERRMYDWSLAR  + ++Y WPFE DI +  
Sbjct: 125 ELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIMEPS 184

Query: 184 TQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALN 221
            + PPP+EPED GPTR++GYF   W VL + LS+A N
Sbjct: 185 REEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

[Close]

BLAST of IVF0023468 vs. TAIR 10
Match: AT5G21430.2 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-51
Identity = 109/217 (50.23%), Postives = 143/217 (65.90%), Query Frame = 0


Query: 4   AAVPSTTTVHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATTETATE 63
           + +   + VHI   +         +  + P  +  + +    RNS+E SAE  T   ++ 
Sbjct: 5   STITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGGSST 64

Query: 64  MEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVQ 123
             +E    A  ESPSLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  +V+
Sbjct: 65  AVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKERVK 124

Query: 124 ELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEADITQIQ 183
           ELK QGL+EE+L  K++L+K SY ILS+VEERRMYDWSLAR  + ++Y WPFE DI +  
Sbjct: 125 ELKEQGLDEEQLKTKMDLIK-SYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIMEPS 184

Query: 184 TQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALN 221
            + PPP+EPED GPTR++GYF   W VL + LS+A N
Sbjct: 185 REEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 216

The following BLAST results are available for this feature:

BLAST of IVF0023468 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84VQ4	2.5e-52	50.69	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of IVF0023468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VF89	9.5e-116	100.00	NAD(P)H-quinone oxidoreductase subunit U OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUP1	9.5e-116	100.00	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A0A0L072	2.0e-110	96.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G647480 PE=4 SV=1	[more]
A0A6J1IZ95	3.6e-99	87.89	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1FIT6	4.7e-99	87.44	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita moschata OX...	[more]

BLAST of IVF0023468 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452780.1	3.23e-149	100.00	PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis melo...	[more]
XP_011654197.1	3.33e-142	96.38	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucumis sativus] >KGN55...	[more]
XP_038898705.1	1.97e-137	92.86	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Benincasa hispida]	[more]
XP_023524366.1	2.83e-128	88.34	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022982411.1	1.64e-127	87.89	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita maxima]	[more]

BLAST of IVF0023468 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21430.1	1.7e-53	50.69	Chaperone DnaJ-domain superfamily protein	[more]
AT5G21430.2	1.2e-51	50.23	Chaperone DnaJ-domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..145
IPR036869	Chaperone J-domain superfamily	GENE3D	1.10.287.110	DnaJ domain	coord: 94..170 e-value: 3.7E-5 score: 25.8
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	46565	Chaperone J-domain	coord: 97..163
IPR044199	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic	PANTHER	PTHR47726	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT U, CHLOROPLASTIC	coord: 1..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023468.2	IVF0023468.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)