IVF0023282 (gene) Melon (IVF77) v1

Overview


Name	IVF0023282
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr10: 22335743 .. 22336026 (-)
RNA-Seq Expression	IVF0023282
Synteny	IVF0023282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGGAGACGTCGTCGGGAGTAAGAGGAGCTCTTAATGCTATTTTTAGTGCATGGGAAATGGCACCGAGAGTAATGCGAGATCCCGATGTCATTAATTATTCATCGGGAATGGCATCAGAGGTAAGGGGATCTCCCAATATTTTCATGTTACACCGGGAGTTTCCCTATAAATTAGATGTTTCAGTTATGTGAAACACAGAATTGGAACGAAAGAGAGAAAAAAGGAGGAGATGCCAGCGATCGAAGAGAAGAGAAGTGCCCAGCCGTCGCCGCCGTGA

mRNA sequence

ATGGCGTTGGAGACGTCGTCGGGAGTAAGAGGAGCTCTTAATGCTATTTTTAGTGCATGGGAAATGGCACCGAGAGTAATGCGAGATCCCGATGTCATTAATTATTCATCGGGAATGGCATCAGAGAGAAAAAAGGAGGAGATGCCAGCGATCGAAGAGAAGAGAAGTGCCCAGCCGTCGCCGCCGTGA

Coding sequence (CDS)

ATGGCGTTGGAGACGTCGTCGGGAGTAAGAGGAGCTCTTAATGCTATTTTTAGTGCATGGGAAATGGCACCGAGAGTAATGCGAGATCCCGATGTCATTAATTATTCATCGGGAATGGCATCAGAGAGAAAAAAGGAGGAGATGCCAGCGATCGAAGAGAAGAGAAGTGCCCAGCCGTCGCCGCCGTGA

Protein sequence

MALETSSGVRGALNAIFSAWEMAPRVMRDPDVINYSSGMASERKKEEMPAIEEKRSAQPSPP

Homology

[Close]

BLAST of IVF0023282 vs. ExPASy TrEMBL
Match: A0A5D3CWQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001080 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MALETSSGVRGALNAIFSAWEMAPRVMRDPDVINYSSGMASERKKEEMPAIEEKRSAQ 59
          M  E S  VRGA +AIF + EMAP VM++PDVI+ SSGM SE+++EE+    E +  +
Sbjct: 1  MVSEMSPEVRGAPDAIFGSSEMAPGVMKNPDVISDSSGMTSEKEEEEIRLASETKRGE 58

[Close]

BLAST of IVF0023282 vs. NCBI nr
Match: TYK16327.1 (uncharacterized protein E5676_scaffold21G001080 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 1.97e-06
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 1  MALETSSGVRGALNAIFSAWEMAPRVMRDPDVINYSSGMASERKKEEM 48
          M  E S  VRGA +AIF + EMAP VM++PDVI+ SSGM SE+++EE+
Sbjct: 1  MVSEMSPEVRGAPDAIFGSSEMAPGVMKNPDVISDSSGMTSEKEEEEI 48

The following BLAST results are available for this feature:

BLAST of IVF0023282 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023282 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWQ6	3.6e-04	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0023282 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16327.1	1.97e-06	58.33	uncharacterized protein E5676_scaffold21G001080 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0023282 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023282.1	IVF0023282.1	mRNA