IVF0023239 (gene) Melon (IVF77) v1

Overview


Name	IVF0023239
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pro-like protein
Location	chr02: 18467968 .. 18468411 (+)
RNA-Seq Expression	IVF0023239
Synteny	IVF0023239

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGAAAACCAATGATCAGGTTCAAGCAGTTCATCAAGACGTTGAAGGATTGAAAGATCAATTGACAAAAATCCTAGAATTACTCACTACTGGAAGAGGAAAGAGTATTGTGAGGACTTCGTCACAAGTGGAAATGGATCTGACTCAGGTACTAGAGGACATGCCTGCATACCCTTCGGGTTTCACTCCTCAAAGGTCGTCTAGTCCACGCATGGTGGATAGGACATATCCTACATCATTTCCCACGTCAAATCCTAACACAACCACCCAACAAGAAGCCCATGTGAGTGATCCCATATCTACTCCAATTACGGAAAGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAATAAGACTGAAATTTCTAGAAGAAAGACTGCGCGCCATTAAGGTGCAGACATGTACGAGAGTATCAACGCAACACAACTATGTTTGA

mRNA sequence

ATGGATGAGAAAACCAATGATCAGGTTCAAGCAGTTCATCAAGACGTTGAAGGATTGAAAGATCAATTGACAAAAATCCTAGAATTACTCACTACTGGAAGAGGAAAGAGTATTGTGAGGACTTCGTCACAAGTGGAAATGGATCTGACTCAGGTACTAGAGGACATGCCTGCATACCCTTCGGGTTTCACTCCTCAAAGGTCGTCTAGTCCACGCATGGTGGATAGGACATATCCTACATCATTTCCCACGTCAAATCCTAACACAACCACCCAACAAGAAGCCCATGTGAGTGATCCCATATCTACTCCAATTACGGAAAGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAATAAGACTGAAATTTCTAGAAGAAAGACTGCGCGCCATTAAGGTGCAGACATGTACGAGAGTATCAACGCAACACAACTATGTTTGA

Coding sequence (CDS)

ATGGATGAGAAAACCAATGATCAGGTTCAAGCAGTTCATCAAGACGTTGAAGGATTGAAAGATCAATTGACAAAAATCCTAGAATTACTCACTACTGGAAGAGGAAAGAGTATTGTGAGGACTTCGTCACAAGTGGAAATGGATCTGACTCAGGTACTAGAGGACATGCCTGCATACCCTTCGGGTTTCACTCCTCAAAGGTCGTCTAGTCCACGCATGGTGGATAGGACATATCCTACATCATTTCCCACGTCAAATCCTAACACAACCACCCAACAAGAAGCCCATGTGAGTGATCCCATATCTACTCCAATTACGGAAAGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAATAAGACTGAAATTTCTAGAAGAAAGACTGCGCGCCATTAAGGTGCAGACATGTACGAGAGTATCAACGCAACACAACTATGTTTGA

Protein sequence

MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYPSGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISEEQGSRIRLKFLEERLRAIKVQTCTRVSTQHNYV

Homology

[Close]

BLAST of IVF0023239 vs. ExPASy TrEMBL
Match: A0A5D3CGN1 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00520 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.4e-51
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP
Sbjct: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISE 115
           SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESG  + E
Sbjct: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGADMYE 114

[Close]

BLAST of IVF0023239 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 9.3e-51
Identity = 111/133 (83.46%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDE+TNDQVQAV QDVEGLKDQL KILELLTTGRGKS+  TSSQVE+DL QVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISEEQGSRI 120
            GFTPQRSSSPRM DRTYPTSFPT NPNTTTQQ AH ++PIST I E GKKISEEQGSR 
Sbjct: 61  PGFTPQRSSSPRMGDRTYPTSFPTPNPNTTTQQVAHANNPISTLIMEGGKKISEEQGSRR 120

Query: 121 RLKFLEERLRAIK 134
           RL+FLEERLR I+
Sbjct: 121 RLEFLEERLRVIE 133

[Close]

BLAST of IVF0023239 vs. ExPASy TrEMBL
Match: A0A5A7UUY2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G00080 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.2e-50
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP
Sbjct: 137 MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 196

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISE 115
           SGFTPQRSSSPRMVDRTYPTSFPT NPNTTTQQEAHVSDPISTPITESG  + E
Sbjct: 197 SGFTPQRSSSPRMVDRTYPTSFPTLNPNTTTQQEAHVSDPISTPITESGADMYE 250

[Close]

BLAST of IVF0023239 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.7e-50
Identity = 110/133 (82.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDE+TNDQVQAV QDVEGLKDQL KILELLTTGRGKS+V TSSQVE+DL QVLEDMP YP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVVGTSSQVEVDLNQVLEDMPTYP 60

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISEEQGSRI 120
            GFTPQRSSSPRM DRTYPTSFP  NPNTTTQQ AH ++PIST I E GKKISEEQGSR 
Sbjct: 61  PGFTPQRSSSPRMGDRTYPTSFPAPNPNTTTQQAAHANNPISTLIMEGGKKISEEQGSRR 120

Query: 121 RLKFLEERLRAIK 134
           RL+FLEERLR I+
Sbjct: 121 RLEFLEERLRVIE 133

[Close]

BLAST of IVF0023239 vs. ExPASy TrEMBL
Match: A0A5A7TXF2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001530 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.9e-50
Identity = 109/133 (81.95%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDE+TNDQVQAV QDVEGLKDQL KILELLTTGRGKS+  TSSQVE+DL QVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISEEQGSRI 120
            GFTPQRSSSPRM D TYPTSFP  NPNTTTQQ AH ++PISTPI E  KKISEEQGSR 
Sbjct: 61  PGFTPQRSSSPRMGDITYPTSFPAPNPNTTTQQAAHANNPISTPIMEGSKKISEEQGSRR 120

Query: 121 RLKFLEERLRAIK 134
           RL+FLEERLR I+
Sbjct: 121 RLEFLEERLRVIE 133

[Close]

BLAST of IVF0023239 vs. NCBI nr
Match: TYK09459.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 212 bits (539), Expect = 8.73e-67
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP
Sbjct: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISE 114
           SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESG  + E
Sbjct: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGADMYE 114

[Close]

BLAST of IVF0023239 vs. NCBI nr
Match: KAA0046607.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (528), Expect = 5.98e-65
Identity = 109/133 (81.95%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDE+TNDQVQAV QDVEGLKDQL KILELLTTGRGKS+  TSSQVE+DL QVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISEEQGSRI 120
            GFTPQRSSSPRM D TYPTSFP  NPNTTTQQ AH ++PISTPI E  KKISEEQGSR 
Sbjct: 61  PGFTPQRSSSPRMGDITYPTSFPAPNPNTTTQQAAHANNPISTPIMEGSKKISEEQGSRR 120

Query: 121 RLKFLEERLRAIK 133
           RL+FLEERLR I+
Sbjct: 121 RLEFLEERLRVIE 133

[Close]

BLAST of IVF0023239 vs. NCBI nr
Match: KAA0059732.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 4.14e-64
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP
Sbjct: 137 MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 196

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISE 114
           SGFTPQRSSSPRMVDRTYPTSFPT NPNTTTQQEAHVSDPISTPITESG  + E
Sbjct: 197 SGFTPQRSSSPRMVDRTYPTSFPTLNPNTTTQQEAHVSDPISTPITESGADMYE 250

[Close]

BLAST of IVF0023239 vs. NCBI nr
Match: XP_008452348.1 (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo] >KAA0060506.1 Gag-pro-like protein [Cucumis melo var. makuwa] >TYK00746.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (524), Expect = 7.54e-63
Identity = 110/133 (82.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDE+TNDQVQAV QDVEGLKDQL KILELLTTGRGKS+  TSSQVE+DL QVLED+ AYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISEEQGSRI 120
             FTPQR SSPRMVDRTYPTSFP  NPNTTTQQ AHVSD ISTPIT+SGKKISEEQGSR 
Sbjct: 61  PSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQQAAHVSDLISTPITKSGKKISEEQGSRK 120

Query: 121 RLKFLEERLRAIK 133
           RL+FLEERL  I+
Sbjct: 121 RLEFLEERLCTIE 133

[Close]

BLAST of IVF0023239 vs. NCBI nr
Match: XP_016902756.1 (PREDICTED: uncharacterized protein LOC107991868 [Cucumis melo] >KAA0025341.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (499), Expect = 2.32e-60
Identity = 106/133 (79.70%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60
           MDE+TNDQVQAV QDVEGLKDQL KILELLTTGRGKS+   SSQVE+DL QVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61  SGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGKKISEEQGSRI 120
            GFTPQRSSSPRM        +PT NPN  TQQ  HVSDP+STPITESGKKISEEQGSR 
Sbjct: 61  QGFTPQRSSSPRMT-------YPTQNPNPITQQANHVSDPMSTPITESGKKISEEQGSRK 120

Query: 121 RLKFLEERLRAIK 133
           RL+FLEERLRAIK
Sbjct: 121 RLEFLEERLRAIK 126

The following BLAST results are available for this feature:

BLAST of IVF0023239 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023239 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGN1	2.4e-51	96.49	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499...	[more]
A0A5A7V681	9.3e-51	83.46	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UUY2	1.2e-50	95.61	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551...	[more]
A0A5A7VAU5	2.7e-50	82.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXF2	7.9e-50	81.95	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114...	[more]

BLAST of IVF0023239 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09459.1	8.73e-67	96.49	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0046607.1	5.98e-65	81.95	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0059732.1	4.14e-64	95.61	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
XP_008452348.1	7.54e-63	82.71	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo] >KAA0060506.1 Gag...	[more]
XP_016902756.1	2.32e-60	79.70	PREDICTED: uncharacterized protein LOC107991868 [Cucumis melo] >KAA0025341.1 Gag...	[more]

BLAST of IVF0023239 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023239.1	IVF0023239.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity