IVF0023218 (gene) Melon (IVF77) v1

Overview


Name	IVF0023218
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 227776 .. 228679 (+)
RNA-Seq Expression	IVF0023218
Synteny	IVF0023218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACACATCTTCCGCCCCCAATTTCTTTTCTAATACATCGTCACTCTCTTTTTGCTTCTTCCTCTCGCTTCTCTGCAACCGGAAGCTTCGTTTCCTTCACGCTCCCACTCCCGCTCAATGCTGCATTGTTCTCACTGCCTCACACATCGGGAACCCGATCGCTTCGATGATTTCATGTGAGAATCCGCTCCGATCCTCTTCGCTTTTGTGTTCTATCCTCTGCGCACATTGATCTCTTCATTGTTTCTCGTTTTTAATCTGATTTGTTCTTCGGATTACCATTCCTCTAATTCTAATAGTAATCCGCTCTCTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTGTACCGCGTCAGTGACGTAAAGAGCCTTTGGCAAATCGGATATTAATTGTTTGTTCGTATTTGATTTATGCGTAACTTGTCTCTTGGTTGAGATCGATTCTGTGTTTTTAATTGTTTTGGCATGTTGACAGGTGTTGTTCGGGATGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCGCGGATCAACTCGCGGCATAATTTTTTTCCACGGAAATTTTGACTAATACTGAACCTAAAACTCACCATTTTTTATCTTTCAATTTTCACTCTTTTTCCTTTATCAAATTATTTTGAAAGAAACCGATTTCTGAGAGAGATTGATCGTCTCTAGCGTTTTGGAATTACATTTTGTTGCCCATTTTTGTCCACAATCAATAATGTCCTCTTAGAAATTGGAATAAACTTCTCGACAAATAATTCATATTTGGTAACAGCGATTAAAAAATTTATCAAAACCGGAAG

mRNA sequence

AACACATCTTCCGCCCCCAATTTCTTTTCTAATACATCGTCACTCTCTTTTTGCTTCTTCCTCTCGCTTCTCTGCAACCGGAAGCTTCGTTTCCTTCACGCTCCCACTCCCGCTCAATGCTGCATTGTTCTCACTGCCTCACACATCGGGAACCCGATCGCTTCGATGATTTCATGTGTTGTTCGGGATGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCGCGGATCAACTCGCGGCATAATTTTTTTCCACGGAAATTTTGACTAATACTGAACCTAAAACTCACCATTTTTTATCTTTCAATTTTCACTCTTTTTCCTTTATCAAATTATTTTGAAAGAAACCGATTTCTGAGAGAGATTGATCGTCTCTAGCGTTTTGGAATTACATTTTGTTGCCCATTTTTGTCCACAATCAATAATGTCCTCTTAGAAATTGGAATAAACTTCTCGACAAATAATTCATATTTGGTAACAGCGATTAAAAAATTTATCAAAACCGGAAG

Coding sequence (CDS)

ATGCTGCATTGTTCTCACTGCCTCACACATCGGGAACCCGATCGCTTCGATGATTTCATGTGTTGTTCGGGATGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCGCGGATCAACTCGCGGCATAA

Protein sequence

MLHCSHCLTHREPDRFDDFMCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQQLEKIRMDTADQLAA

Homology

[Close]

BLAST of IVF0023218 vs. ExPASy TrEMBL
Match: A0A0A0L0C4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-35
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MLHCSHCLTHREPDRFDDFMCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDF+CCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTADQLAA 76
          QLEKIRMDT DQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

[Close]

BLAST of IVF0023218 vs. NCBI nr
Match: KGN54032.1 (hypothetical protein Csa_021665 [Cucumis sativus])

HSP 1 Score: 157 bits (396), Expect = 2.93e-48
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MLHCSHCLTHREPDRFDDFMCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDF+CCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTADQLAA 75
          QLEKIRMDT DQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

[Close]

BLAST of IVF0023218 vs. NCBI nr
Match: KAG6605847.1 (hypothetical protein SDJN03_03164, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035795.1 hypothetical protein SDJN02_02594 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (321), Expect = 8.42e-37
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MLHCSHCLTHREPDRFDDFMCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCL H E DRFDDF+CCSGCGKVLGQFFGGKYIDHSKP+LG  TKLKKRK EKKQ
Sbjct: 1  MLHCSHCLIHCEADRFDDFVCCSGCGKVLGQFFGGKYIDHSKPMLGKDTKLKKRKTEKKQ 60

Query: 61 QLEKIRMDTAD 71
          + EKI MD+AD
Sbjct: 61 KHEKIEMDSAD 71

The following BLAST results are available for this feature:

BLAST of IVF0023218 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0C4	2.1e-35	97.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1	[more]

BLAST of IVF0023218 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54032.1	2.93e-48	97.33	hypothetical protein Csa_021665 [Cucumis sativus]	[more]
KAG6605847.1	8.42e-37	83.10	hypothetical protein SDJN03_03164, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0023218 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023218.1	IVF0023218.1	mRNA