IVF0023048 (gene) Melon (IVF77) v1

Overview


Name	IVF0023048
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-dependent RNA polymerase
Location	chr10: 13680563 .. 13684634 (+)
RNA-Seq Expression	IVF0023048
Synteny	IVF0023048

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAAACAATTCACATTAGTGGATTTCCTTCACATGTAACGGCAGATGCTGTTAAGAATTTTTTGGAGGGTCATACAGGTCCAGGAACTGTGTATGCAATAAAGGTTAGACCACCTAAGAGAGGAGGAGGTAGACTATATGCTATTGTTCAATTCACTAGTGCTACACAAGCTGAGTTGATCGTTTCTTTAGCTAATCAGCGTCTATGGTACGGATCTTCTTATCTTAAGGCTCGGTCTACCGAGGTTGATATTGTACCAAAGCCTAAGACATACATGTATATGTTGAAAGACTTGCTGCTATGCTTTGGTTGTCAAGTCTCAAGCGAAAAGTTCCGTGTTCTATGGGAAGGAAATGTTGATTTGGTGACTTTTGGAATTGGAATGCGGAAAATGAACTTTCATTTGAAATATAATTCTGTTGAGTATAGGCTTGAGCTTTCGTATGAGAACATTTGGCAGATACAACTCCACAGTCCTCAATGTCAGTCCATGAAGTATCTTCTAATCCAGGTTCTATGGTCAAATGTCTATCTAAAGTTGTTTCATTTTATTTGAAAACCATTATTATCCTCTCTTATAAAGTTGAAACATTTTTCTATCCTCGTTTAAATTGTTTCAACTATTGCGTTAGTTTGAAAATTAAATCGATGTAACCTTGTTGAAATGTTGCTATCTTCTCTTAACTAGTAGATATGTTACTCACATGTAAGCTTAATAGTCAGGTTATCTTTTTTTATGTTTTTCTTATCAGTTATATGGAGCTCCTCGGATATATAAAAAGTTGCACCGAGTAGTGGACAAATCTTCGACAATCCGATTTTGAACTTTTTTATGGAAGTACCTGATGATCAATGGGTTAGAACGACTGATTTTACTTCATCATGCTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCTTGAACTTCCAACTTTTAAACAAAATTTTGCTTATTATGAAGAATTTGAACATGAATTCCGCTTGATAGATGAAGATGCCAGTTTTTCTTTTTGTAGAGATCTTGCTCCCATTGTTGATTCTCGTCCTCATGTTCTGCCGTATGAAATTATTTTTAAAATAAATGCATTGGTTCAACATGGTTGCATTCCATGGTCATTACTTGATACTAGTTTTTACCGGTTGGTTGAAAGAATAATAACAATAAGAATTGAATTTGTCGAACATGCTTTGGAAAAACTGTTCCATTTAAAGGAATGCAACTATGATCCATCAAACTTTCTGACAGAACAGTTCAGAAGGTATTCAAGACATCCTCCAAATTCTCCTGTTATATCCCTGGATGATGGTTTGGTATATGTTCGTAGGGTTCAAATAACACCTGTAAGGTGTACTTTTGTGGTCCTGAAGTCAATGTCTCAAATCGGGTGTTGCGCCATTTTTCTAAATATATTGATAATTTTCTTCGTGTGTCTTTCGTCGATGAGGAGTGGGATAAAATGCGTTCGACAGATTTATTGCCGCGAATGTCTTCAAAGAGTGAGGATAGTAAAACTGATATCTACAGGAGAATTCTCTCTGTTCTTAAAAATGGCATAGTCATCGGTGATAAAACCTTTCAGTTTCTTGCATTCTCATCAAGCCAATTAAGAGATAATTCCTTGTGGATGTTTGCATCGGGACCTGATATTGATGCAGCTTATATTAGAGCGTGGATGGGCGATTTTCGACATATCAAGAATCCAGCAAAGTATGCTGCTAGATTGGGCCAATCATTCGGCTCATCGACAGAGGCACTTTCGGTTGCTAGTAATGAAAGGGAAATTATTCCTGACATAGAGGTTCAACATGGAGAAGTCAAGTATGTCTTTTCTGATGGAATTGGAAAAATATCAAGCAAATTTGCCAAAGAGGTTGCTACAAAATGTGGCTTCCAAGCTGTCCCATCTGCTTTTCAAATTCGTTATGGTGGATATAAGGGTGTTGTTGCTGTCGACCCGTACTCAACTATAAAATTATCTCTGAGGAAGAGTATGTGCAAATTTGAATCAGACAACATAAAACTTGACGTCTTAGGCCATAGCAAATACCAACCATGCTTCCTTAATCGTCAACTGATTACTCTTTTATCTACTCTAGGTGTTAGAGACGAAATTTTTGAGAAAAAACAAAGTGAAGCTGTAGAACAATTGGATGCTATATTAACAGATCCATTGAAGGCTCAGGAAGCCTTGGAGTTGATGTCTCCTGGAGAGAATACTAATATTCTCAAGGAAATGCTCAAATGTGGCTATAAACCAGATGTCGAGCCGTATCTATCGATGATGTTACAAACTTTCCGGGCATCAAAGTTGCTAGAGTTACGCACCAAATCAAGAATCTTTATCCCAAATGGGAGAGCGATGATGGGATGTCTTGATGAGACTATGACCTTGGAATATGGGCAGGTATTTGTGCAAATCTCTGGTGGTAGACATCGAAATTTATCTGAATCCTTCGCATTCAATAGTGGTCAAGAACACTGTTTAGTTATTGAAGGAAAAGTTACAGTTGCTAAAAATCCCTGCCTGCACCCTGGTGATGTTCGTGTATTAAAGGCTGTAAACGTACCTGGTTTGTACCATATGGTTGACTGTGTAGTTTTTCCTCAAAAGGATCAAGGTTAGTAGTACATTGATCAATGCTAGTTCTTTCTTGATTTGGAAAATAAGTTCTGTTTTCAAATTTAAATGCAAGAAAGCTCCTTCTATGTTCAACTTCAGAATAGTAACACGTCAACATATATTTTCTAGAATAGGTTCTGTGACTAATAGCTTGCATAATTTTGTTTTGAAGATTTTCCTCTCAAATAGATGTTACTAACCAGATTCTGTACTTGTTTATTTAGGCCTCATCCGAATGAATGCTCAGGTAGTGATTTAGATGGTGATATTTACTTTGTCTGTTGGGACACCGAATTGATCCCGCCTCGACAGATTACGCCTATGGATTATACTCCTGCACTGCCAATTGAGTTAGATCGCGATGTCACAACTGAGGTATTTCGTCACAGGGGCGTGCTTTGAAAACTTCATAACTCATGCCACTTTTTCAGTGCTTAATCTCCATTTTGATATTTGACAAAACAGTAAACTTCAGTGTGTTTTTTTTTTCTTAAAATAGATTCACGTTGCACATTGCTTCTCGTTAGGAGAGAAACCATTCATGTTTCTATGTGTTCTTAGTCCTAATCTGAAACTACTGTTCTTTACCACAGGATATCCAAGAATATTTTGTGAACTACATGGTTAATGATAGTCTTGGAATCATTGCCAATGCCCATACTGCCTTTGCAGATAAAGAGCCCTTTAAAGCAAGAAGTAGTCCTTGTGTGGAGCTTGCAAAGCAATTCTCCATTGCTGTGGACTTCCCAAAAACTGGAGTACCAGCTATAATACCTTCTCATTTATATGTCAAAGAGTTTCCTGACTTTATGGAGAAGCCTGACCGACCCTCTTATGAATCAAAGAATGTAATTGGAAAACTTTTTCGGGCTGTGAAAGACATTGCACCAACTTTGAGCCATATTCAGCCATTTACTCGAGATGTAGCGAGAAGGTGTTACGACTGTGATATGGAAGTCGAAGGCTTTGAAGATTATTTTGAAGATGCCTTCTATCATAAAAGCAATTATGATGACAAGTTGGGGAATTTGCTCGATTATTACGGGATCAAGTCTGAGGCAGAGATACTTAGTGGGAGTATTATGAGGATGTCCAAGTCTTTCACCAGGAGAAGAGATGCAGAAGCAATCAACTTGGCTGTGAGGTCTCTAAGAAAGGAGGCTAGGACATGGTTCAATGCAAGAGAAGGCGCGGATTCAAATTCAGATGATTTATTTGCCAAAGCTTCAGCTTGGTACTATGTCACATACCATCACTCGTATTGGGGCTGCTATAATGAGGGAATGAAACGCGACCATTATTTGAGCTTCCCCTGGTGTATTTACGACAAACTGATGCAAATCAAGGAGAATAATTTGAGGAAAAGAGAGAGAGCTGCGAGATTGGCAACTTTCGACAGATTTGGACATGTGTTAAATCTTGGTGGGCGTTGA

mRNA sequence

ATGGGGAAAACAATTCACATTAGTGGATTTCCTTCACATGTAACGGCAGATGCTGTTAAGAATTTTTTGGAGGGTCATACAGGTCCAGGAACTGTGTATGCAATAAAGGTTAGACCACCTAAGAGAGGAGGAGGTAGACTATATGCTATTGTTCAATTCACTAGTGCTACACAAGCTGAGTTGATCGTTTCTTTAGCTAATCAGCGTCTATGGTACGGATCTTCTTATCTTAAGGCTCGGTCTACCGAGGTTGATATTGTACCAAAGCCTAAGACATACATGTATATGTTGAAAGACTTGCTGCTATGCTTTGGTTGTCAAGTCTCAAGCGAAAAGTTCCGTGTTCTATGGGAAGGAAATGTTGATTTGGTGACTTTTGGAATTGGAATGCGGAAAATGAACTTTCATTTGAAATATAATTCTGTTGAGTATAGGCTTGAGCTTTCGTATGAGAACATTTGGCAGATACAACTCCACAGTCCTCAATGTCAGTCCATGAAGTATCTTCTAATCCAGGTTCTATGTAGTGGACAAATCTTCGACAATCCGATTTTGAACTTTTTTATGGAAGTACCTGATGATCAATGGGTTAGAACGACTGATTTTACTTCATCATGCTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCTTGAACTTCCAACTTTTAAACAAAATTTTGCTTATTATGAAGAATTTGAACATGAATTCCGCTTGATAGATGAAGATGCCAGTTTTTCTTTTTGTAGAGATCTTGCTCCCATTGTTGATTCTCGTCCTCATGTTCTGCCGTATGAAATTATTTTTAAAATAAATGCATTGGTTCAACATGGTTGCATTCCATGGTCATTACTTGATACTAGTTTTTACCGGTTGGTTGAAAGAATAATAACAATAAGAATTGAATTTGTCGAACATGCTTTGGAAAAACTGTTCCATTTAAAGGAATGCAACTATGATCCATCAAACTTTCTGACAGAACAGTTCAGAAGGTATTCAAGACATCCTCCAAATTCTCCTGTTATATCCCTGGATGATGGTTTGGTATATGTGTACTTTTGTGGTCCTGAAGTCAATGTCTCAAATCGGGTGTTGCGCCATTTTTCTAAATATATTGATAATTTTCTTCGTGTGTCTTTCGTCGATGAGGAGTGGGATAAAATGCGTTCGACAGATTTATTGCCGCGAATGTCTTCAAAGAGTGAGGATAGTAAAACTGATATCTACAGGAGAATTCTCTCTGTTCTTAAAAATGGCATAGTCATCGGTGATAAAACCTTTCAGTTTCTTGCATTCTCATCAAGCCAATTAAGAGATAATTCCTTGTGGATGTTTGCATCGGGACCTGATATTGATGCAGCTTATATTAGAGCGTGGATGGGCGATTTTCGACATATCAAGAATCCAGCAAAGTATGCTGCTAGATTGGGCCAATCATTCGGCTCATCGACAGAGGCACTTTCGGTTGCTAGTAATGAAAGGGAAATTATTCCTGACATAGAGGTTCAACATGGAGAAGTCAAGTATGTCTTTTCTGATGGAATTGGAAAAATATCAAGCAAATTTGCCAAAGAGGTTGCTACAAAATGTGGCTTCCAAGCTGTCCCATCTGCTTTTCAAATTCGTTATGGTGGATATAAGGGTGTTGTTGCTGTCGACCCGTACTCAACTATAAAATTATCTCTGAGGAAGAGTATGTGCAAATTTGAATCAGACAACATAAAACTTGACGTCTTAGGCCATAGCAAATACCAACCATGCTTCCTTAATCGTCAACTGATTACTCTTTTATCTACTCTAGGTGTTAGAGACGAAATTTTTGAGAAAAAACAAAGTGAAGCTGTAGAACAATTGGATGCTATATTAACAGATCCATTGAAGGCTCAGGAAGCCTTGGAGTTGATGTCTCCTGGAGAGAATACTAATATTCTCAAGGAAATGCTCAAATGTGGCTATAAACCAGATGTCGAGCCGTATCTATCGATGATGTTACAAACTTTCCGGGCATCAAAGTTGCTAGAGTTACGCACCAAATCAAGAATCTTTATCCCAAATGGGAGAGCGATGATGGGATGTCTTGATGAGACTATGACCTTGGAATATGGGCAGGTATTTGTGCAAATCTCTGGTGGTAGACATCGAAATTTATCTGAATCCTTCGCATTCAATAGTGGTCAAGAACACTGTTTAGTTATTGAAGGAAAAGTTACAGTTGCTAAAAATCCCTGCCTGCACCCTGGTGATGTTCGTGTATTAAAGGCTGTAAACGTACCTGGTTTGTACCATATGGTTGACTGTGTAATGTTACTAACCAGATTCTGTACTTGTTTATTTAGGCCTCATCCGAATGAATGCTCAGGTAGTGATTTAGATGGTGATATTTACTTTGTCTGTTGGGACACCGAATTGATCCCGCCTCGACAGATTACGCCTATGGATTATACTCCTGCACTGCCAATTGAGTTAGATCGCGATGTCACAACTGAGGATATCCAAGAATATTTTGTGAACTACATGGTTAATGATAGTCTTGGAATCATTGCCAATGCCCATACTGCCTTTGCAGATAAAGAGCCCTTTAAAGCAAGAAGTAGTCCTTGTGTGGAGCTTGCAAAGCAATTCTCCATTGCTGTGGACTTCCCAAAAACTGGAGTACCAGCTATAATACCTTCTCATTTATATGTCAAAGAGTTTCCTGACTTTATGGAGAAGCCTGACCGACCCTCTTATGAATCAAAGAATGTAATTGGAAAACTTTTTCGGGCTGTGAAAGACATTGCACCAACTTTGAGCCATATTCAGCCATTTACTCGAGATGTAGCGAGAAGGTGTTACGACTGTGATATGGAAGTCGAAGGCTTTGAAGATTATTTTGAAGATGCCTTCTATCATAAAAGCAATTATGATGACAAGTTGGGGAATTTGCTCGATTATTACGGGATCAAGTCTGAGGCAGAGATACTTAGTGGGAGTATTATGAGGATGTCCAAGTCTTTCACCAGGAGAAGAGATGCAGAAGCAATCAACTTGGCTGTGAGGTCTCTAAGAAAGGAGGCTAGGACATGGTTCAATGCAAGAGAAGGCGCGGATTCAAATTCAGATGATTTATTTGCCAAAGCTTCAGCTTGGTACTATGTCACATACCATCACTCGTATTGGGGCTGCTATAATGAGGGAATGAAACGCGACCATTATTTGAGCTTCCCCTGGTGTATTTACGACAAACTGATGCAAATCAAGGAGAATAATTTGAGGAAAAGAGAGAGAGCTGCGAGATTGGCAACTTTCGACAGATTTGGACATGTGTTAAATCTTGGTGGGCGTTGA

Coding sequence (CDS)

ATGGGGAAAACAATTCACATTAGTGGATTTCCTTCACATGTAACGGCAGATGCTGTTAAGAATTTTTTGGAGGGTCATACAGGTCCAGGAACTGTGTATGCAATAAAGGTTAGACCACCTAAGAGAGGAGGAGGTAGACTATATGCTATTGTTCAATTCACTAGTGCTACACAAGCTGAGTTGATCGTTTCTTTAGCTAATCAGCGTCTATGGTACGGATCTTCTTATCTTAAGGCTCGGTCTACCGAGGTTGATATTGTACCAAAGCCTAAGACATACATGTATATGTTGAAAGACTTGCTGCTATGCTTTGGTTGTCAAGTCTCAAGCGAAAAGTTCCGTGTTCTATGGGAAGGAAATGTTGATTTGGTGACTTTTGGAATTGGAATGCGGAAAATGAACTTTCATTTGAAATATAATTCTGTTGAGTATAGGCTTGAGCTTTCGTATGAGAACATTTGGCAGATACAACTCCACAGTCCTCAATGTCAGTCCATGAAGTATCTTCTAATCCAGGTTCTATGTAGTGGACAAATCTTCGACAATCCGATTTTGAACTTTTTTATGGAAGTACCTGATGATCAATGGGTTAGAACGACTGATTTTACTTCATCATGCTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCTTGAACTTCCAACTTTTAAACAAAATTTTGCTTATTATGAAGAATTTGAACATGAATTCCGCTTGATAGATGAAGATGCCAGTTTTTCTTTTTGTAGAGATCTTGCTCCCATTGTTGATTCTCGTCCTCATGTTCTGCCGTATGAAATTATTTTTAAAATAAATGCATTGGTTCAACATGGTTGCATTCCATGGTCATTACTTGATACTAGTTTTTACCGGTTGGTTGAAAGAATAATAACAATAAGAATTGAATTTGTCGAACATGCTTTGGAAAAACTGTTCCATTTAAAGGAATGCAACTATGATCCATCAAACTTTCTGACAGAACAGTTCAGAAGGTATTCAAGACATCCTCCAAATTCTCCTGTTATATCCCTGGATGATGGTTTGGTATATGTGTACTTTTGTGGTCCTGAAGTCAATGTCTCAAATCGGGTGTTGCGCCATTTTTCTAAATATATTGATAATTTTCTTCGTGTGTCTTTCGTCGATGAGGAGTGGGATAAAATGCGTTCGACAGATTTATTGCCGCGAATGTCTTCAAAGAGTGAGGATAGTAAAACTGATATCTACAGGAGAATTCTCTCTGTTCTTAAAAATGGCATAGTCATCGGTGATAAAACCTTTCAGTTTCTTGCATTCTCATCAAGCCAATTAAGAGATAATTCCTTGTGGATGTTTGCATCGGGACCTGATATTGATGCAGCTTATATTAGAGCGTGGATGGGCGATTTTCGACATATCAAGAATCCAGCAAAGTATGCTGCTAGATTGGGCCAATCATTCGGCTCATCGACAGAGGCACTTTCGGTTGCTAGTAATGAAAGGGAAATTATTCCTGACATAGAGGTTCAACATGGAGAAGTCAAGTATGTCTTTTCTGATGGAATTGGAAAAATATCAAGCAAATTTGCCAAAGAGGTTGCTACAAAATGTGGCTTCCAAGCTGTCCCATCTGCTTTTCAAATTCGTTATGGTGGATATAAGGGTGTTGTTGCTGTCGACCCGTACTCAACTATAAAATTATCTCTGAGGAAGAGTATGTGCAAATTTGAATCAGACAACATAAAACTTGACGTCTTAGGCCATAGCAAATACCAACCATGCTTCCTTAATCGTCAACTGATTACTCTTTTATCTACTCTAGGTGTTAGAGACGAAATTTTTGAGAAAAAACAAAGTGAAGCTGTAGAACAATTGGATGCTATATTAACAGATCCATTGAAGGCTCAGGAAGCCTTGGAGTTGATGTCTCCTGGAGAGAATACTAATATTCTCAAGGAAATGCTCAAATGTGGCTATAAACCAGATGTCGAGCCGTATCTATCGATGATGTTACAAACTTTCCGGGCATCAAAGTTGCTAGAGTTACGCACCAAATCAAGAATCTTTATCCCAAATGGGAGAGCGATGATGGGATGTCTTGATGAGACTATGACCTTGGAATATGGGCAGGTATTTGTGCAAATCTCTGGTGGTAGACATCGAAATTTATCTGAATCCTTCGCATTCAATAGTGGTCAAGAACACTGTTTAGTTATTGAAGGAAAAGTTACAGTTGCTAAAAATCCCTGCCTGCACCCTGGTGATGTTCGTGTATTAAAGGCTGTAAACGTACCTGGTTTGTACCATATGGTTGACTGTGTAATGTTACTAACCAGATTCTGTACTTGTTTATTTAGGCCTCATCCGAATGAATGCTCAGGTAGTGATTTAGATGGTGATATTTACTTTGTCTGTTGGGACACCGAATTGATCCCGCCTCGACAGATTACGCCTATGGATTATACTCCTGCACTGCCAATTGAGTTAGATCGCGATGTCACAACTGAGGATATCCAAGAATATTTTGTGAACTACATGGTTAATGATAGTCTTGGAATCATTGCCAATGCCCATACTGCCTTTGCAGATAAAGAGCCCTTTAAAGCAAGAAGTAGTCCTTGTGTGGAGCTTGCAAAGCAATTCTCCATTGCTGTGGACTTCCCAAAAACTGGAGTACCAGCTATAATACCTTCTCATTTATATGTCAAAGAGTTTCCTGACTTTATGGAGAAGCCTGACCGACCCTCTTATGAATCAAAGAATGTAATTGGAAAACTTTTTCGGGCTGTGAAAGACATTGCACCAACTTTGAGCCATATTCAGCCATTTACTCGAGATGTAGCGAGAAGGTGTTACGACTGTGATATGGAAGTCGAAGGCTTTGAAGATTATTTTGAAGATGCCTTCTATCATAAAAGCAATTATGATGACAAGTTGGGGAATTTGCTCGATTATTACGGGATCAAGTCTGAGGCAGAGATACTTAGTGGGAGTATTATGAGGATGTCCAAGTCTTTCACCAGGAGAAGAGATGCAGAAGCAATCAACTTGGCTGTGAGGTCTCTAAGAAAGGAGGCTAGGACATGGTTCAATGCAAGAGAAGGCGCGGATTCAAATTCAGATGATTTATTTGCCAAAGCTTCAGCTTGGTACTATGTCACATACCATCACTCGTATTGGGGCTGCTATAATGAGGGAATGAAACGCGACCATTATTTGAGCTTCCCCTGGTGTATTTACGACAAACTGATGCAAATCAAGGAGAATAATTTGAGGAAAAGAGAGAGAGCTGCGAGATTGGCAACTTTCGACAGATTTGGACATGTGTTAAATCTTGGTGGGCGTTGA

Protein sequence

MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAELIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGNVDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVLCSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQNFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLLDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLDDGLVYVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGIGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIKLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAVNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYTPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR

Homology

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BLAST of IVF0023048 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1377.5 bits (3564), Expect = 0.0e+00
Identity = 711/1134 (62.70%), Postives = 855/1134 (75.40%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTI + GFP+ V+A+ VK FLE  TG GTVYAIKVR PK+GG R+YAIVQFTS     
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LI++ A +RL+YG SYLKA   E DIVPKP+  ++ +  L + FGCQVS++KF  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVLCSGQIF 180
               V+FGIGMRK++F   +   +YRLELSYENIWQI LHSPQ +S K+L+IQV+ + +IF
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ---DNP------ILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQNF 240
               D P      I++F+ +  D+QW+RTTDFTSS  IGQS++ CL+LP  L +P F++NF
Sbjct: 181  EKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENF 240

Query: 241  AYYEEFEHEFRLIDEDASFSF-CRDLAPIVDSRP-HVLPYEIIFKINALVQHGCIPWSLL 300
            A Y E      LI+  +S+S     L P+VD  P   LP+EI+FK+N LVQ+ C+    L
Sbjct: 241  ANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPAL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRY--SRHPPNSPVIS 360
            D  FYRL+ +    R   ++H LEKLFHL EC Y+P+++L ++++++      P SP IS
Sbjct: 301  DLDFYRLLNQKKYDR-ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTIS 360

Query: 361  LDDGLVY----------VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDL 420
            LDDGLVY          VYF GPEVNVSNRVLRH+SKYI+NFLRVSFVDE+ +K+RS DL
Sbjct: 361  LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDL 420

Query: 421  LPRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDA 480
             PR S++    +T +Y RI SVL++GIVIGDK F+FLAFSSSQLR+NS WMFA    I A
Sbjct: 421  SPRSSTQ---RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITA 480

Query: 481  AYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSD 540
            A+IRAWMGDF HI+N AKYAARLGQSF SS E L+V S+E E+IPD+E+     +YVFSD
Sbjct: 481  AHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSD 540

Query: 541  GIGKISSKFAKEVATKCGF-QAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESD 600
            GIGKIS++FA++VA KCG  +  PSAFQIRYGGYKGVVAVDP S+ KLSLRKSM KFES+
Sbjct: 541  GIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESE 600

Query: 601  NIKLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEAL 660
            N KLDVL  SKYQPC++NRQLITLLSTLGV D +FEKKQ E V++LDAILT PL+A EAL
Sbjct: 601  NTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEAL 660

Query: 661  ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGC 720
             LM+PGENTNILK ++ CGYKPD EP+LSMMLQ FRASKLLELRTK+RIFI  GR+MMGC
Sbjct: 661  GLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGC 720

Query: 721  LDETMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVL 780
            LDET TLEYGQV VQ S               G+    +I G V VAKNPCLHPGDVRVL
Sbjct: 721  LDETRTLEYGQVVVQYSD----------PMRPGRR--FIITGPVVVAKNPCLHPGDVRVL 780

Query: 781  KAVNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPM 840
            +AVNVP L HMVDCV+    F     RPHPNECSGSDLDGDIYFVCWD EL+PPR   PM
Sbjct: 781  QAVNVPALNHMVDCVV----FPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 840

Query: 841  DYTPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAK 900
            DYTP     LD DVT E+++EYF NY+VNDSLGIIANAHTAFADKEP KA S PC+ELAK
Sbjct: 841  DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAK 900

Query: 901  QFSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSH 960
            +FS AVDFPKTGV A+IP HLYVKE+PDFMEKPD+P+YESKNVIGKLFR VK+ AP L  
Sbjct: 901  KFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 960

Query: 961  IQPFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSI 1020
            I+ FT DVA + YD DMEV+GFE+Y ++AFY K+NYD KLGNL+DYYGIK+EAEILSG I
Sbjct: 961  IKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1020

Query: 1021 MRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSY 1080
            MRMSKSFT+RRDAE+I  AVR+LRKE  + FNA E  ++ S    AKASAWY+VTYH SY
Sbjct: 1021 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES----AKASAWYHVTYHSSY 1080

Query: 1081 WGCYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLG 1111
            WG YNEG+ RDH+LSF WC+YDKL++IK+ NL +R+R     T +R  HVL  G
Sbjct: 1081 WGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQ---ETLERLDHVLRFG 1107

[Close]

BLAST of IVF0023048 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 937.6 bits (2422), Expect = 1.3e-271
Identity = 476/734 (64.85%), Postives = 571/734 (77.79%), Query Frame = 0


Query: 355  VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDSKTDIYR 414
            VYF GPE+NVSNRV+R+FS  I+NFLR+SFVDE+ +K+R+TDL PR +S  + ++T +Y+
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 415  RILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPA 474
            R+LSVL +GI IG K F+FLAFSSSQLRDNS WMFAS   + A+ IR WMGDFR+I+N A
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 475  KYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGIGKISSKFAKEVATKC 534
            KYAARLGQSF SSTE L V   E E I DI+      ++VFSDGIGKISS FA EVA KC
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKC 188

Query: 535  GFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIKLDVLGHSKYQPCFL 594
              +   PSAFQIRYGGYKGVVAVDP S  KLSLRKSM KF+SDNI +DVL +SKYQP FL
Sbjct: 189  NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248

Query: 595  NRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLK 654
            NRQLITLLSTLGVRD +FE+KQ EAV QL+ ++TDP  A EA+ELM  GE TN +KE+L 
Sbjct: 249  NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308

Query: 655  CGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETMTLEYGQVFVQIS 714
            CGY+PD EPYLSM+LQTFRASKLLEL+TKSRI IP GRAMMGCLDET TL+YGQVF++ +
Sbjct: 309  CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368

Query: 715  GGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAVNVPGLYHMVDCVML 774
             G + N                + GKV +AKNPCLHPGD+R+L AV+VP L+HM +CV+ 
Sbjct: 369  SGVNDN------------DRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV- 428

Query: 775  LTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYTPALPIELDRDVTTE 834
               F     RPHPNECSGSDLDGDIYFV WD  LIPPR +TPMDYTPA    LD DVT E
Sbjct: 429  ---FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIE 488

Query: 835  DIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAVDFPKTGVPAII 894
            +++EYF NY+VN+SLG+IANAH  FADKE  KA SSPC+ELAK FSIAVDFPKTGVPA+I
Sbjct: 489  EVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALI 548

Query: 895  PSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTRDVARRCYDCDM 954
            P  L+VKE+PDFMEK D+ +YESK VIGKL+R +K   P   HI+ FTR+VARR YD DM
Sbjct: 549  PPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDM 608

Query: 955  EVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKSFTRRRDAEAIN 1014
             V+G+EDY  +A   K  YD KLGNL+D+YGIKSEAEI+SG I++M+K+FT++ DA+AI 
Sbjct: 609  IVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIR 668

Query: 1015 LAVRSLRKEARTWFNAREGADS--NSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLS 1074
            LAVRSLRKEAR+ F+     D+    D   AKASAWY+VTYH  +WGCYNEG +R H++S
Sbjct: 669  LAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFIS 720

Query: 1075 FPWCIYDKLMQIKE 1086
            FPWCIY+KL++IK+
Sbjct: 729  FPWCIYEKLLRIKQ 720

[Close]

BLAST of IVF0023048 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 716.1 bits (1847), Expect = 6.3e-205
Identity = 444/1138 (39.02%), Postives = 650/1138 (57.12%), Query Frame = 0


Query: 4    TIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTS---ATQ 63
            T+ IS  P  + AD +  FLE H G  TV+A+++ P  R     R +A VQFT+    ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70

Query: 64   AELIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEK-FRVL- 123
            A+L+ S    +L + +  L+      DI+P+P      L D++L  G   S EK F  L 
Sbjct: 71   AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130

Query: 124  -WEGNVDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQ--LHSPQCQSMKYLLIQV 183
             W+G    +      R++ F +  +   Y++E+ +E+I +      +     +   L+++
Sbjct: 131  KWDGVRCWIL--TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKL 190

Query: 184  LCSGQIFDNPILN-----------FFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGL 243
                ++F    ++           F  E  D  W+RTTDF+ S SIG S+  CL++ NG 
Sbjct: 191  KYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGS 250

Query: 244  ELPTFKQNFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVL--PYEIIFKINALVQ 303
             +        YY E       +D   +F+    + P++++    L  PYEI+F++NALV 
Sbjct: 251  TMLDIFSGLPYYREDTLSLTYVD-GKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVH 310

Query: 304  HGCIPWSLLDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFR---RYS 363
               I  SL   S   L++ +  + +E     L+KL       YDP  F+  Q +   +  
Sbjct: 311  AQKI--SLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKM 370

Query: 364  RHPPNSPVISLDDGLVY-----------VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVD 423
            +H P S    L +  +            +Y  GPE+  +N V+++F++++ +F+RV+FV+
Sbjct: 371  KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430

Query: 424  EEWDKMRSTDLLPRMSSKS----EDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLR 483
            E+W K+ +  L   ++SK     + S+T+IY R+LS+L  GI +G K F+FLAFS+SQLR
Sbjct: 431  EDWSKLPANAL--SVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLR 490

Query: 484  DNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIP 543
             NS+WMFAS   + A  IR WMG FR I++ +K AAR+GQ F +S + L V + + E IP
Sbjct: 491  GNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIP 550

Query: 544  DIEVQHGEVKYVFSDGIGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTI 603
            DIEV      Y FSDGIGKIS  FAK+VA KCG   VPSAFQIRYGGYKGV+AVD  S  
Sbjct: 551  DIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFR 610

Query: 604  KLSLRKSMCKFESDNIKLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQL 663
            KLSLR SM KF+S+N  L+V   ++  PCFLNR++I LLSTLG+ D +FE  Q+  +  L
Sbjct: 611  KLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSML 670

Query: 664  DAILTDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTK 723
              +L D   A   L+ +S   + N+L +ML  GY P  EPYLSMML+    S+L EL+++
Sbjct: 671  GNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSR 730

Query: 724  SRIFIPNGRAMMGCLDETMTLEYGQVFVQI--SGGRHRNLSESFAFNSGQEHCLVIEGKV 783
             RI +P GR ++GC+DE   LEYGQV+V++  +    ++  +S+ F    E   V+ GKV
Sbjct: 731  CRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSY-FRKIDEETSVVIGKV 790

Query: 784  TVAKNPCLHPGDVRVLKAVNVPGLYH--MVDCVMLLTRFCTCLFRPHPNECSGSDLDGDI 843
             V KNPCLHPGD+RVL A+          +DC++    F     RPHPNECSG DLDGD 
Sbjct: 791  VVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCII----FPQKGERPHPNECSGGDLDGDQ 850

Query: 844  YFVCWDTELIPPRQITPMDYTPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAF 903
            +FV WD ++IP     PMDY  + P  +D DVT E+I ++FV+YM++D+LG+I+ AH   
Sbjct: 851  FFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVH 910

Query: 904  ADKEPFKARSSPCVELAKQFSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKN 963
            AD++P KARS  C+ELA   S AVDF KTG PA +P  L  +EFPDF+E+ ++P+Y S++
Sbjct: 911  ADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISES 970

Query: 964  VIGKLFRAVKDIAPTLSHIQPFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGN 1023
            V GKL+RAVK    +L+  +P         YD  +E  GFE + E A  H+  Y +KL +
Sbjct: 971  VFGKLYRAVKS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTS 1030

Query: 1024 LLDYYGIKSEAEILSGSI----MRMSKSFTRRRD-AEAINLAVRSLRKEARTWFNAREGA 1083
            L+ YYG  +E EIL+G +    M +++   R  D  + I L+V+ L KEA  WF   E +
Sbjct: 1031 LMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---EKS 1090

Query: 1084 DSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKR 1092
              +       ASAWYYVTY+       N   ++  +LSFPW + D L+ IK  N +++
Sbjct: 1091 CEDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQ 1121

[Close]

BLAST of IVF0023048 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 685.6 bits (1768), Expect = 9.1e-196
Identity = 425/1134 (37.48%), Postives = 638/1134 (56.26%), Query Frame = 0


Query: 11   PSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG-GRLYAIVQFTSATQAELIVSLANQ- 70
            PS V A+ +  F       G  +A ++    RG   R +  VQF SA  A     LA+  
Sbjct: 19   PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAGLASSG 78

Query: 71   RL-WYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRV--LWEG-NVDLV 130
            RL  +  + L    + VD++P+            L  G +V+   F     W+G   +++
Sbjct: 79   RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138

Query: 131  TFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVLCSGQI---FD 190
                G R+++ +L+++S  Y+LE+ +E++            M  +L+Q+  + +I     
Sbjct: 139  P---GKRRVDLYLEHDSQRYKLEVLFEDMKDCL--GCTLDGMGAILLQLNYAPRIHTAIS 198

Query: 191  NPILNF------FMEVPDD---QWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQNFA 250
             P +N       F    +D    WVR  DFT + S G+ S+L LKL     +    ++  
Sbjct: 199  GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLP 258

Query: 251  YYEEF-EHEFRLIDEDASFSFCRDLAPIVD-SRPHVLPYEIIFKINALVQHGCIPWSLLD 310
            +     E     +D   + S   ++ P+V   R + +PYE++F++N+L+  G I    ++
Sbjct: 259  FSGNLGELTMNSMDGVGASS---NVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVN 318

Query: 311  TSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLDD 370
               ++ ++    + ++      EK+  L+   Y P  F+ ++   YS    ++ ++S + 
Sbjct: 319  ADLFKALQE---LPVDVSRRIFEKMHKLESTCYGPLQFIQQE--AYSMKRSHNVLLSNEG 378

Query: 371  ------GLVYVY---------FC-GPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRS 430
                   L+  Y         FC GPE  V+N V++H S Y  +F+RV+FVDE+W K+ S
Sbjct: 379  EGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSS 438

Query: 431  TDLLPRMSSK--SEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASG 490
              +  R+     S+  KT +Y RILS+LK G  IG K F+FLAFS+SQLR NS+WMFAS 
Sbjct: 439  NAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASN 498

Query: 491  PDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVK 550
              ++A  IR WMG F +I++ +K AAR+GQ F SS +   V   + E+IPDIE+     K
Sbjct: 499  ASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSK 558

Query: 551  YVFSDGIGKISSKFAKEVATKCGFQA--VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSM 610
            Y+FSDGIGKIS +FAK VA   G     +PSAFQIRYGGYKGV+A+DP S+I LSLR SM
Sbjct: 559  YIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSM 618

Query: 611  CKFESDNIKLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPL 670
             KFES++  L++   SK QPC++NR++I+LLSTLG+RDEIF   Q + + + + +LT+  
Sbjct: 619  KKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKE 678

Query: 671  KAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNG 730
             A   L  +  G  T    +ML  GY+P  EPYLSM+L+  + ++L ++RT+ +I +P G
Sbjct: 679  VALSVLGKLG-GSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKG 738

Query: 731  RAMMGCLDETMTLEYGQVFVQI--SGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCL 790
            R ++GCLDET  LEYGQV+++I  +    ++ ++S+ +N   +   V+ GKV + KNPCL
Sbjct: 739  RVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVV-GKVAITKNPCL 798

Query: 791  HPGDVRVLKAVNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELI 850
            HPGD+RVL+A+  P L  MVDC++   R      RPHPNECSG DLDGD+YF+ WD +LI
Sbjct: 799  HPGDIRVLEAIYDPDLVGMVDCLVFPQRG----ERPHPNECSGGDLDGDLYFITWDDKLI 858

Query: 851  PPRQITPMDYTPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARS 910
            P +  TPMDYT   P  +D  VT E+IQ++FV+YM+NDSLG I+ AH   AD+ P KARS
Sbjct: 859  PEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARS 918

Query: 911  SPCVELAKQFSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVK 970
              C++LA   S+AVDF KTG PA +P  L  +E+PDFME+ ++P Y S  V+GKL+R+  
Sbjct: 919  PECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAM 978

Query: 971  DIAPTLSHIQPFTRDVAR--RCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIK 1030
                        +   A+    YD D+EV G +++ + A  +   Y++KL  L++YY  +
Sbjct: 979  GHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAE 1038

Query: 1031 SEAEILSGSIMRMSKSFTRRRD-------AEAINLAVRSLRKEARTWFNAREGADSNSDD 1090
             E EIL+G+I   +K    +RD        + I  AV +L +EAR W      +    +D
Sbjct: 1039 LEDEILTGNI--RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLL----SSRKEED 1098

Query: 1091 LFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRER 1094
                ASAWY VTYH        +  +   + SFPW   D L+ IK ++  +R R
Sbjct: 1099 ASRMASAWYRVTYH-------PDRRRGKRFWSFPWIACDNLLAIKASSQLRRRR 1120

[Close]

BLAST of IVF0023048 vs. ExPASy Swiss-Prot
Match: Q8LHH9 (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 6.0e-147
Identity = 358/998 (35.87%), Postives = 529/998 (53.01%), Query Frame = 0


Query: 143  EYRLELSYENIWQIQLHSPQCQSMKYL----LIQVLCSGQIFDNPILNFFMEVPDDQWVR 202
            + +LE    ++ +++L+   C  +  L    L+    +   F  P+  F +   DD W+R
Sbjct: 214  DVKLEFPVRDVLEVRLYRLDCSLLLRLAAAPLVHYRTADDDFHEPV-PFDLLDDDDPWIR 273

Query: 203  TTDFTSSCSIGQSSSLCLKLPNGLELPTFKQNFAYYEEFEHEFRLIDEDASFSFCRDLA- 262
            TTD T S +IG+     +   +    P   +   Y    E    ++D    +   R L  
Sbjct: 274  TTDITPSGAIGRCGVYRISF-SARFWPKMDRALDYMR--ERRVAIVDCGGGWGPRRGLTV 333

Query: 263  --------PIVD-----SRPHVLPYEIIFKINALVQHGCIPWSLLDTSFYRLVERIITIR 322
                    P+ D          L + ++F +NALV  G I    L   F+ L+ R     
Sbjct: 334  RDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGR---SE 393

Query: 323  IEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHP---------PNSPVISLDDGLVYV 382
                  AL   +  K   +D    L +   R +R+P          ++ V  L       
Sbjct: 394  ENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCSKVGDDHAEVRRLVITPTRA 453

Query: 383  YFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMR-------STDLLPRMSSKSEDS 442
            Y   PEV  SNRVLRH+ +  D FLRV+F+DE    +        +  ++  + S     
Sbjct: 454  YCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQ 513

Query: 443  KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFR 502
            KT +Y+R+  +L  G  +  + + FLAFSS+QLRD S W FA         IR WMG F 
Sbjct: 514  KTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFT 573

Query: 503  HIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGIGKISSKFAK 562
              KN AK+AAR+GQ F S+   +++  +E +   D +V H E  Y+FSDGIGKI+   A 
Sbjct: 574  S-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFD-DVVHNE--YIFSDGIGKITPDLAL 633

Query: 563  EVATKCGF-QAVPSAFQIRYGGYKGVVAV--DPYSTIKLSLRKSMCKFESDNIKLDVLGH 622
            EVA +       PSA+QIR+ G+KGV+AV        +L LR SM KFES+++ L+V+  
Sbjct: 634  EVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSW 693

Query: 623  SKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENT 682
            +K+QP FLNRQ+I LLS+L V D IF + Q   +  L+ IL+D   A E L   S  ++ 
Sbjct: 694  TKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVL-TTSCADDG 753

Query: 683  NILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETMTLEY 742
            N    ML  G++P  EP+L  ML   R+++L +L  K+RIF+P GR +MGCLDE   LE 
Sbjct: 754  NTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQ 813

Query: 743  GQVFVQ--ISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAVNVPG 802
            GQ F++  +       +     F+S  ++  VI G V +AKNPCLHPGDVR+L+AV+VP 
Sbjct: 814  GQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPE 873

Query: 803  LYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPP--RQITPMDYTPA 862
            L+H+VDC++    F     RPH NE SGSDLDGD+YFV WD +LIPP  +   PMDY+P 
Sbjct: 874  LHHLVDCLV----FPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPP 933

Query: 863  LPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIA 922
               +L R V+  DI ++F+  M++++LG I NAH   AD   + A    C+ LA+  + A
Sbjct: 934  EAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATA 993

Query: 923  VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIA--PTLSHIQP 982
            VDFPKTG  AI+P HL  K +PDFM K D  SY+S+ ++G+L+R++++ +    +S    
Sbjct: 994  VDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVSQEVC 1053

Query: 983  FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1042
               D+    YD D+EV G  D+   A+  K +YD +L  LL  Y +++EAE+++G I  +
Sbjct: 1054 TPNDLP---YDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFL 1113

Query: 1043 SKSFTRRRD--AEAINLAVRSLRKEARTWFNA-----REGADSNSDDLF-AKASAWYYVT 1085
             K+ ++++    + +  A  +LRKE ++ F +      E  D   + L+  KASAWY VT
Sbjct: 1114 VKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVT 1173

[Close]

BLAST of IVF0023048 vs. ExPASy TrEMBL
Match: A0A1S3CPY1 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103502906 PE=3 SV=1)

HSP 1 Score: 2226.4 bits (5768), Expect = 0.0e+00
Identity = 1098/1133 (96.91%), Postives = 1101/1133 (97.18%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVL------ 180
            VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQ+       
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  -----CSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                  SGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
            NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL
Sbjct: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
            DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD
Sbjct: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361  DGLVY----------VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVY          VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
            GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK
Sbjct: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780
            TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV
Sbjct: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780

Query: 781  NVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT 840
            NVPGLYHMVDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT
Sbjct: 781  NVPGLYHMVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT 840

Query: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900
            PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS
Sbjct: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900

Query: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960
            IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP
Sbjct: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960

Query: 961  FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020
            FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM
Sbjct: 961  FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020

Query: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC 1080
            SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC
Sbjct: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC 1080

Query: 1081 YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR 1113
            YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR
Sbjct: 1081 YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR 1129

[Close]

BLAST of IVF0023048 vs. ExPASy TrEMBL
Match: A0A5A7VKY3 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00550 PE=3 SV=1)

HSP 1 Score: 2226.4 bits (5768), Expect = 0.0e+00
Identity = 1098/1133 (96.91%), Postives = 1101/1133 (97.18%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVL------ 180
            VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQ+       
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  -----CSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                  SGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
            NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL
Sbjct: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
            DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD
Sbjct: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361  DGLVY----------VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVY          VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
            GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK
Sbjct: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780
            TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV
Sbjct: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780

Query: 781  NVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT 840
            NVPGLYHMVDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT
Sbjct: 781  NVPGLYHMVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT 840

Query: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900
            PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS
Sbjct: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900

Query: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960
            IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP
Sbjct: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960

Query: 961  FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020
            FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM
Sbjct: 961  FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020

Query: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC 1080
            SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC
Sbjct: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC 1080

Query: 1081 YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR 1113
            YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR
Sbjct: 1081 YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR 1129

[Close]

BLAST of IVF0023048 vs. ExPASy TrEMBL
Match: A0A0S1YD00 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=RDR1a PE=2 SV=1)

HSP 1 Score: 2206.8 bits (5717), Expect = 0.0e+00
Identity = 1090/1132 (96.29%), Postives = 1096/1132 (96.82%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMY LKDLLLCFGCQVSSEKFRVLWEGN
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVL------ 180
            VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQ+       
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  -----CSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                  SGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
            NFAYYEEFEHEFRLIDE ASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL
Sbjct: 241  NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
            DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD
Sbjct: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361  DGLVY----------VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVY          VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
            GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK
Sbjct: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780
            TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV
Sbjct: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780

Query: 781  NVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT 840
            NVPGLYHMVDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIPPR+ITPMDYT
Sbjct: 781  NVPGLYHMVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYT 840

Query: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900
            PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS
Sbjct: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900

Query: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960
            IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP
Sbjct: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960

Query: 961  FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020
            FTRDVARRCYDCDMEVEGFEDY EDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM
Sbjct: 961  FTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020

Query: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC 1080
            SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG 
Sbjct: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGY 1080

Query: 1081 YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1112
            YNEGMKRD+YLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFG+VLNLGG
Sbjct: 1081 YNEGMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGG 1128

[Close]

BLAST of IVF0023048 vs. ExPASy TrEMBL
Match: E9NWK6 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1a PE=2 SV=1)

HSP 1 Score: 2098.9 bits (5437), Expect = 0.0e+00
Identity = 1034/1133 (91.26%), Postives = 1066/1133 (94.09%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMY L++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVL------ 180
            VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQ+       
Sbjct: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181  -----CSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                  SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
            NFAYYEEFEHEFRLIDEDA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
            D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361  DGLVY----------VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVY          V+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
            GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780
            T TLEYGQVFVQIS GRHRNLSESFAFN  G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780

Query: 781  VNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDY 840
            VN+PGLYHMVDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIP RQI PMDY
Sbjct: 781  VNIPGLYHMVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDY 840

Query: 841  TPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQF 900
            TPA P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK F
Sbjct: 841  TPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLF 900

Query: 901  SIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQ 960
            S+AVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES  VIGKLFRAVKDIAPTLSHI+
Sbjct: 901  SVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIR 960

Query: 961  PFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMR 1020
             FTRDVARRCYDCDMEVEGFEDY EDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMR
Sbjct: 961  SFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMR 1020

Query: 1021 MSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG 1080
            MSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG
Sbjct: 1021 MSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG 1080

Query: 1081 CYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1112
            CYNEGMKRDHYLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFGHVLNLGG
Sbjct: 1081 CYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1129

[Close]

BLAST of IVF0023048 vs. ExPASy TrEMBL
Match: A0A0A0KSM9 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239140 PE=3 SV=1)

HSP 1 Score: 2078.5 bits (5384), Expect = 0.0e+00
Identity = 1034/1175 (88.00%), Postives = 1066/1175 (90.72%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMY L++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVL------ 180
            VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQ+       
Sbjct: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181  -----CSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                  SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
            NFAYYEEFEHEFRLIDEDA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
            D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361  DGLVY----------VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVY          V+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
            GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780
            T TLEYGQVFVQIS GRHRNLSESFAFN  G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780

Query: 781  VNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDY 840
            VN+PGLYHMVDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIP RQI PMDY
Sbjct: 781  VNIPGLYHMVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDY 840

Query: 841  TPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHT---------------------- 900
            TPA P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHT                      
Sbjct: 841  TPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFXXXXXXXXXXXXXX 900

Query: 901  --------------------AFADKEPFKARSSPCVELAKQFSIAVDFPKTGVPAIIPSH 960
                                AFADKE FKARSSPC+ELAK FS+AVDFPKTGVPAIIPSH
Sbjct: 901  XXXXXXXXXXXXXXXXXXXXAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSH 960

Query: 961  LYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTRDVARRCYDCDMEVE 1020
            LYVKEFPDFMEKPDRPSYES  VIGKLFRAVKDIAPTLSHI+ FTRDVARRCYDCDMEVE
Sbjct: 961  LYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVE 1020

Query: 1021 GFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKSFTRRRDAEAINLAV 1080
            GFEDY EDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMRMSKSFTRRRDAEAINLAV
Sbjct: 1021 GFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAV 1080

Query: 1081 RSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCI 1112
            RSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWC+
Sbjct: 1081 RSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCV 1140

[Close]

BLAST of IVF0023048 vs. NCBI nr
Match: XP_008465250.1 (PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465251.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465253.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465254.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >KAA0067106.1 RNA-dependent RNA polymerase 1 [Cucumis melo var. makuwa] >TYJ97491.1 RNA-dependent RNA polymerase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 2221 bits (5755), Expect = 0.0
Identity = 1098/1133 (96.91%), Postives = 1101/1133 (97.18%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVL------ 180
            VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQ+       
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  -----CSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                  SGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
            NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL
Sbjct: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
            DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD
Sbjct: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361  DGLVYV----------YFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVYV          YFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
            GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK
Sbjct: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780
            TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV
Sbjct: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780

Query: 781  NVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT 840
            NVPGLYHMVDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT
Sbjct: 781  NVPGLYHMVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT 840

Query: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900
            PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS
Sbjct: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900

Query: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960
            IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP
Sbjct: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960

Query: 961  FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020
            FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM
Sbjct: 961  FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020

Query: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC 1080
            SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC
Sbjct: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC 1080

Query: 1081 YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR 1112
            YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR
Sbjct: 1081 YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR 1129

[Close]

BLAST of IVF0023048 vs. NCBI nr
Match: NP_001315397.1 (RNA-dependent RNA polymerase 1 [Cucumis melo] >ALM88236.1 RNA-dependent RNA polymerase 1a [Cucumis melo])

HSP 1 Score: 2201 bits (5703), Expect = 0.0
Identity = 1090/1132 (96.29%), Postives = 1096/1132 (96.82%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMY LKDLLLCFGCQVSSEKFRVLWEGN
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVL------ 180
            VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQ+       
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  -----CSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                  SGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
            NFAYYEEFEHEFRLIDE ASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL
Sbjct: 241  NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
            DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD
Sbjct: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361  DGLVYV----------YFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVYV          YFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
            GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK
Sbjct: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780
            TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV
Sbjct: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAV 780

Query: 781  NVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYT 840
            NVPGLYHMVDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIPPR+ITPMDYT
Sbjct: 781  NVPGLYHMVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYT 840

Query: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900
            PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS
Sbjct: 841  PALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFS 900

Query: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960
            IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP
Sbjct: 901  IAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQP 960

Query: 961  FTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020
            FTRDVARRCYDCDMEVEGFEDY EDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM
Sbjct: 961  FTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRM 1020

Query: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGC 1080
            SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG 
Sbjct: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGY 1080

Query: 1081 YNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1111
            YNEGMKRD+YLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFG+VLNLGG
Sbjct: 1081 YNEGMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGG 1128

[Close]

BLAST of IVF0023048 vs. NCBI nr
Match: NP_001267692.1 (RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_031740799.1 RNA-dependent RNA polymerase 1-like isoform X1 [Cucumis sativus] >XP_031740800.1 RNA-dependent RNA polymerase 1-like isoform X1 [Cucumis sativus] >XP_031740801.1 RNA-dependent RNA polymerase 1-like isoform X1 [Cucumis sativus] >ADU77015.1 RNA-dependent RNA polymerase 1a [Cucumis sativus] >ALM88233.1 RNA-dependent RNA polymerase 1a [Cucumis sativus] >KAE8648062.1 hypothetical protein Csa_005834 [Cucumis sativus])

HSP 1 Score: 2093 bits (5423), Expect = 0.0
Identity = 1034/1133 (91.26%), Postives = 1066/1133 (94.09%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMY L++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVLC----- 180
            VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQ+       
Sbjct: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181  ------SGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                  SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
            NFAYYEEFEHEFRLIDEDA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
            D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361  DGLVYV----------YFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVYV          +FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
            GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780
            T TLEYGQVFVQIS GRHRNLSESFAFN  G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780

Query: 781  VNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDY 840
            VN+PGLYHMVDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIP RQI PMDY
Sbjct: 781  VNIPGLYHMVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDY 840

Query: 841  TPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQF 900
            TPA P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK F
Sbjct: 841  TPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLF 900

Query: 901  SIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQ 960
            S+AVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES  VIGKLFRAVKDIAPTLSHI+
Sbjct: 901  SVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIR 960

Query: 961  PFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMR 1020
             FTRDVARRCYDCDMEVEGFEDY EDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMR
Sbjct: 961  SFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMR 1020

Query: 1021 MSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG 1080
            MSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG
Sbjct: 1021 MSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG 1080

Query: 1081 CYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1111
            CYNEGMKRDHYLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFGHVLNLGG
Sbjct: 1081 CYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1129

[Close]

BLAST of IVF0023048 vs. NCBI nr
Match: XP_038891504.1 (RNA-dependent RNA polymerase 1 isoform X1 [Benincasa hispida] >XP_038891505.1 RNA-dependent RNA polymerase 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 1966 bits (5092), Expect = 0.0
Identity = 975/1135 (85.90%), Postives = 1036/1135 (91.28%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKT+HISGFPS+VTADAVK+FLEG TG GTVYAIKVR PKRGG R+YAIVQFTSATQAE
Sbjct: 1    MGKTVHISGFPSNVTADAVKSFLEGRTGVGTVYAIKVRAPKRGGARVYAIVQFTSATQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LI+SLANQ LWYGSSYLKAR+ EVDIVPKP+TYMY L+DL LCFGCQVSSEKFRVLWEG+
Sbjct: 61   LIISLANQSLWYGSSYLKARAAEVDIVPKPRTYMYTLEDLPLCFGCQVSSEKFRVLWEGD 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVL------ 180
            +DLVTFGIGMRKMNFHLK+NSV+YRLELSYENIWQIQLH PQ +SMKYL+IQ+       
Sbjct: 121  IDLVTFGIGMRKMNFHLKHNSVKYRLELSYENIWQIQLHHPQHRSMKYLIIQLYGAPRIY 180

Query: 181  -----CSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                 CS QIFD+P+ NFFMEVPDDQW+RT DFT SCSIGQSSSLCLKLPN  +LP F+Q
Sbjct: 181  KNVAPCSVQIFDDPLFNFFMEVPDDQWIRTADFTPSCSIGQSSSLCLKLPNRCQLPNFRQ 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
            NFAYYEEFE+EF+L+D DASFSFCRDLAPIVDSRPHVLPYEI+FKINALVQHGCIPW L+
Sbjct: 241  NFAYYEEFENEFQLVDGDASFSFCRDLAPIVDSRPHVLPYEIMFKINALVQHGCIPWPLI 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
            DTSFYRLV+    IRIEFVEHALEKLFHLKEC+Y+PS+F+TEQ+R+YSRHPPNSP ISLD
Sbjct: 301  DTSFYRLVDPR-RIRIEFVEHALEKLFHLKECSYEPSSFITEQYRKYSRHPPNSPAISLD 360

Query: 361  DGLVYV----------YFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
             GLVYV          YFCGPEVNVSNRVLRHF +  DNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  AGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFPQDTDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMS  SEDSKTDIY+RILSVL+NGIVIGDKTFQFLAFSSSQLRDNSLWMFAS P +DAA 
Sbjct: 421  RMSPTSEDSKTDIYKRILSVLRNGIVIGDKTFQFLAFSSSQLRDNSLWMFASRPGLDAAD 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTE LSVA +EREIIPDIE+QHGEVKYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARDEREIIPDIELQHGEVKYVFSDGI 540

Query: 541  GKISSKFAKEVATKCGFQ-AVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNI 600
            GKIS+ FAK+VA KCGFQ + PSAFQIRYGGYKGVVAVDP+S+IKLSLRKSMCKFESDN 
Sbjct: 541  GKISNDFAKKVAAKCGFQGSTPSAFQIRYGGYKGVVAVDPHSSIKLSLRKSMCKFESDNT 600

Query: 601  KLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660
            KLDVLG+SKYQPCFLNRQLITLLSTLGVRDEIFE KQ EAVEQLDAILTDPLKA+EALEL
Sbjct: 601  KLDVLGYSKYQPCFLNRQLITLLSTLGVRDEIFENKQREAVEQLDAILTDPLKAREALEL 660

Query: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720
            M+PGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661  MAPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720

Query: 721  ETMTLEYGQVFVQISGGRHRNLSESFAFN-SGQEHCLVIEGKVTVAKNPCLHPGDVRVLK 780
            ET TLEYGQVFVQIS  R RNLS+SFAFN SG EH LVIEG VTVAKNPCLHPGDVRVLK
Sbjct: 721  ETRTLEYGQVFVQISSARRRNLSDSFAFNMSGPEHRLVIEGNVTVAKNPCLHPGDVRVLK 780

Query: 781  AVNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMD 840
            AVN+P LYH+VDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIPPRQI PMD
Sbjct: 781  AVNIPWLYHLVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMD 840

Query: 841  YTPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQ 900
            YTPA PI+LDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKAR SPCVELAK 
Sbjct: 841  YTPAPPIQLDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARGSPCVELAKL 900

Query: 901  FSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHI 960
            FSIAVDFPKTGVPAIIP HLYVKEFPDFMEKPD+PSYESKNVIGKLFRAVKDIAPTLS+I
Sbjct: 901  FSIAVDFPKTGVPAIIPPHLYVKEFPDFMEKPDKPSYESKNVIGKLFRAVKDIAPTLSYI 960

Query: 961  QPFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIM 1020
            + FTRDVA +CYD DMEVEGFEDY  DAFYHKSNYD KLGNLLDYYGIKSEAEILSGSIM
Sbjct: 961  RSFTRDVAMQCYDSDMEVEGFEDYVGDAFYHKSNYDYKLGNLLDYYGIKSEAEILSGSIM 1020

Query: 1021 RMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREG-ADSNSDDLFAKASAWYYVTYHHSY 1080
            RMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREG ++S+SDDLFAKASAWY+VTYHHSY
Sbjct: 1021 RMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGGSNSDSDDLFAKASAWYHVTYHHSY 1080

Query: 1081 WGCYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1111
            WGCYNE MKRDHYLSFPWC+YDKLMQIKE NLRKRERA RLAT DRFGH LNLGG
Sbjct: 1081 WGCYNEEMKRDHYLSFPWCVYDKLMQIKEKNLRKRERALRLATLDRFGHALNLGG 1130

[Close]

BLAST of IVF0023048 vs. NCBI nr
Match: XP_022943173.1 (RNA-dependent RNA polymerase 1-like isoform X2 [Cucurbita moschata] >XP_022943174.1 RNA-dependent RNA polymerase 1-like isoform X2 [Cucurbita moschata] >XP_022943175.1 RNA-dependent RNA polymerase 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 1830 bits (4740), Expect = 0.0
Identity = 912/1136 (80.28%), Postives = 994/1136 (87.50%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKT+HISGFPSH TAD+VK+FLE  TG GTVYAIKVRPPKRGG R+YAIVQF  A QAE
Sbjct: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LI+SLANQRLWYGSSYLKAR+ +VDIVPKP+TY++ L+DL LCFGCQVSSEKF VLWEG+
Sbjct: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVL------ 180
            V+LVTFG+ MRKMNFHL +N VEYR +LSYENIWQIQLH  Q QSMK LLIQ+       
Sbjct: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180

Query: 181  -----CSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
                  SGQIFD+P+ NFF EVPDDQWVRT DFT S S+GQSSSLCLKLPNG +LP F++
Sbjct: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240

Query: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVL-PYEIIFKINALVQHGCIPWSL 300
            +FAYYEEFE EF+L+D   SFS   DL P+VDSRP+VL PYEIIFK+N LVQ+GCI    
Sbjct: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300

Query: 301  LDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISL 360
            LDT FYRLV+    IR+E+VE+ALEKLFHLKEC Y+PS+FLTEQ+++Y++HP NSP I+L
Sbjct: 301  LDTGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360

Query: 361  DDGLVYV----------YFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLL 420
            DDGLVYV          YFCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361  DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420

Query: 421  PRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480
            PRM+S  E+ KTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421  PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480

Query: 481  YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDG 540
             IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSVA +EREIIPDIEVQHGEVKYVFSDG
Sbjct: 481  VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDG 540

Query: 541  IGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNI 600
            IGKISS FAK VA+KC     PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDN 
Sbjct: 541  IGKISSDFAKRVASKCVLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600

Query: 601  KLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660
            KLDVLG+SKYQPCFLNRQLITLLSTLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601  KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660

Query: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720

Query: 721  ETMTLEYGQVFVQISGGRHRNLSESFAFN-SGQEHCLVIEGKVTVAKNPCLHPGDVRVLK 780
            ET TLEYGQVFVQIS  RHR++S++ AF+ SG E  LVI G VTVAKNPCLHPGDVRVL 
Sbjct: 721  ETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780

Query: 781  AVNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMD 840
            AVNVP LYHMVDCV+   +      RPHPNECSGSDLDGDIYFVCWDTELIPPRQI PMD
Sbjct: 781  AVNVPLLYHMVDCVVFPQKGS----RPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMD 840

Query: 841  YTPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQ 900
            YTPA PI+LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKEPFKARS+PC+ELAK 
Sbjct: 841  YTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKL 900

Query: 901  FSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHI 960
            FSIAVDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYESKNVIGKLFRAVK IAP +S+I
Sbjct: 901  FSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYI 960

Query: 961  QPFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIM 1020
            + FTRDVA RCYD DME EGFEDY EDA YHK+ YD KLGNLLDYYGIKSE+EI SG+IM
Sbjct: 961  RSFTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIM 1020

Query: 1021 RMSKSFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSY 1080
            RMSKSFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSY
Sbjct: 1021 RMSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSY 1080

Query: 1081 WGCYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR 1112
            WG YN+GMKRDHYLSFPWC+Y KLMQ+KENNLR+RE+A+RLAT DRF  VLNL GR
Sbjct: 1081 WGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRVLNLDGR 1131

[Close]

BLAST of IVF0023048 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 1377.5 bits (3564), Expect = 0.0e+00
Identity = 711/1134 (62.70%), Postives = 855/1134 (75.40%), Query Frame = 0


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTI + GFP+ V+A+ VK FLE  TG GTVYAIKVR PK+GG R+YAIVQFTS     
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
            LI++ A +RL+YG SYLKA   E DIVPKP+  ++ +  L + FGCQVS++KF  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVLCSGQIF 180
               V+FGIGMRK++F   +   +YRLELSYENIWQI LHSPQ +S K+L+IQV+ + +IF
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ---DNP------ILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQNF 240
               D P      I++F+ +  D+QW+RTTDFTSS  IGQS++ CL+LP  L +P F++NF
Sbjct: 181  EKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENF 240

Query: 241  AYYEEFEHEFRLIDEDASFSF-CRDLAPIVDSRP-HVLPYEIIFKINALVQHGCIPWSLL 300
            A Y E      LI+  +S+S     L P+VD  P   LP+EI+FK+N LVQ+ C+    L
Sbjct: 241  ANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPAL 300

Query: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRY--SRHPPNSPVIS 360
            D  FYRL+ +    R   ++H LEKLFHL EC Y+P+++L ++++++      P SP IS
Sbjct: 301  DLDFYRLLNQKKYDR-ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTIS 360

Query: 361  LDDGLVY----------VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDL 420
            LDDGLVY          VYF GPEVNVSNRVLRH+SKYI+NFLRVSFVDE+ +K+RS DL
Sbjct: 361  LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDL 420

Query: 421  LPRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDA 480
             PR S++    +T +Y RI SVL++GIVIGDK F+FLAFSSSQLR+NS WMFA    I A
Sbjct: 421  SPRSSTQ---RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITA 480

Query: 481  AYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSD 540
            A+IRAWMGDF HI+N AKYAARLGQSF SS E L+V S+E E+IPD+E+     +YVFSD
Sbjct: 481  AHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSD 540

Query: 541  GIGKISSKFAKEVATKCGF-QAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESD 600
            GIGKIS++FA++VA KCG  +  PSAFQIRYGGYKGVVAVDP S+ KLSLRKSM KFES+
Sbjct: 541  GIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESE 600

Query: 601  NIKLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEAL 660
            N KLDVL  SKYQPC++NRQLITLLSTLGV D +FEKKQ E V++LDAILT PL+A EAL
Sbjct: 601  NTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEAL 660

Query: 661  ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGC 720
             LM+PGENTNILK ++ CGYKPD EP+LSMMLQ FRASKLLELRTK+RIFI  GR+MMGC
Sbjct: 661  GLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGC 720

Query: 721  LDETMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVL 780
            LDET TLEYGQV VQ S               G+    +I G V VAKNPCLHPGDVRVL
Sbjct: 721  LDETRTLEYGQVVVQYSD----------PMRPGRR--FIITGPVVVAKNPCLHPGDVRVL 780

Query: 781  KAVNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPM 840
            +AVNVP L HMVDCV+    F     RPHPNECSGSDLDGDIYFVCWD EL+PPR   PM
Sbjct: 781  QAVNVPALNHMVDCVV----FPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPM 840

Query: 841  DYTPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAK 900
            DYTP     LD DVT E+++EYF NY+VNDSLGIIANAHTAFADKEP KA S PC+ELAK
Sbjct: 841  DYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAK 900

Query: 901  QFSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSH 960
            +FS AVDFPKTGV A+IP HLYVKE+PDFMEKPD+P+YESKNVIGKLFR VK+ AP L  
Sbjct: 901  KFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 960

Query: 961  IQPFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSI 1020
            I+ FT DVA + YD DMEV+GFE+Y ++AFY K+NYD KLGNL+DYYGIK+EAEILSG I
Sbjct: 961  IKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1020

Query: 1021 MRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSY 1080
            MRMSKSFT+RRDAE+I  AVR+LRKE  + FNA E  ++ S    AKASAWY+VTYH SY
Sbjct: 1021 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES----AKASAWYHVTYHSSY 1080

Query: 1081 WGCYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLG 1111
            WG YNEG+ RDH+LSF WC+YDKL++IK+ NL +R+R     T +R  HVL  G
Sbjct: 1081 WGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQ---ETLERLDHVLRFG 1107

[Close]

BLAST of IVF0023048 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 716.1 bits (1847), Expect = 4.4e-206
Identity = 444/1138 (39.02%), Postives = 650/1138 (57.12%), Query Frame = 0


Query: 4    TIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTS---ATQ 63
            T+ IS  P  + AD +  FLE H G  TV+A+++ P  R     R +A VQFT+    ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70

Query: 64   AELIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEK-FRVL- 123
            A+L+ S    +L + +  L+      DI+P+P      L D++L  G   S EK F  L 
Sbjct: 71   AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130

Query: 124  -WEGNVDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQ--LHSPQCQSMKYLLIQV 183
             W+G    +      R++ F +  +   Y++E+ +E+I +      +     +   L+++
Sbjct: 131  KWDGVRCWIL--TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKL 190

Query: 184  LCSGQIFDNPILN-----------FFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGL 243
                ++F    ++           F  E  D  W+RTTDF+ S SIG S+  CL++ NG 
Sbjct: 191  KYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGS 250

Query: 244  ELPTFKQNFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVL--PYEIIFKINALVQ 303
             +        YY E       +D   +F+    + P++++    L  PYEI+F++NALV 
Sbjct: 251  TMLDIFSGLPYYREDTLSLTYVD-GKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVH 310

Query: 304  HGCIPWSLLDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFR---RYS 363
               I  SL   S   L++ +  + +E     L+KL       YDP  F+  Q +   +  
Sbjct: 311  AQKI--SLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKM 370

Query: 364  RHPPNSPVISLDDGLVY-----------VYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVD 423
            +H P S    L +  +            +Y  GPE+  +N V+++F++++ +F+RV+FV+
Sbjct: 371  KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430

Query: 424  EEWDKMRSTDLLPRMSSKS----EDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLR 483
            E+W K+ +  L   ++SK     + S+T+IY R+LS+L  GI +G K F+FLAFS+SQLR
Sbjct: 431  EDWSKLPANAL--SVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLR 490

Query: 484  DNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIP 543
             NS+WMFAS   + A  IR WMG FR I++ +K AAR+GQ F +S + L V + + E IP
Sbjct: 491  GNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIP 550

Query: 544  DIEVQHGEVKYVFSDGIGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTI 603
            DIEV      Y FSDGIGKIS  FAK+VA KCG   VPSAFQIRYGGYKGV+AVD  S  
Sbjct: 551  DIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFR 610

Query: 604  KLSLRKSMCKFESDNIKLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQL 663
            KLSLR SM KF+S+N  L+V   ++  PCFLNR++I LLSTLG+ D +FE  Q+  +  L
Sbjct: 611  KLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSML 670

Query: 664  DAILTDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTK 723
              +L D   A   L+ +S   + N+L +ML  GY P  EPYLSMML+    S+L EL+++
Sbjct: 671  GNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSR 730

Query: 724  SRIFIPNGRAMMGCLDETMTLEYGQVFVQI--SGGRHRNLSESFAFNSGQEHCLVIEGKV 783
             RI +P GR ++GC+DE   LEYGQV+V++  +    ++  +S+ F    E   V+ GKV
Sbjct: 731  CRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSY-FRKIDEETSVVIGKV 790

Query: 784  TVAKNPCLHPGDVRVLKAVNVPGLYH--MVDCVMLLTRFCTCLFRPHPNECSGSDLDGDI 843
             V KNPCLHPGD+RVL A+          +DC++    F     RPHPNECSG DLDGD 
Sbjct: 791  VVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCII----FPQKGERPHPNECSGGDLDGDQ 850

Query: 844  YFVCWDTELIPPRQITPMDYTPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAF 903
            +FV WD ++IP     PMDY  + P  +D DVT E+I ++FV+YM++D+LG+I+ AH   
Sbjct: 851  FFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVH 910

Query: 904  ADKEPFKARSSPCVELAKQFSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKN 963
            AD++P KARS  C+ELA   S AVDF KTG PA +P  L  +EFPDF+E+ ++P+Y S++
Sbjct: 911  ADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISES 970

Query: 964  VIGKLFRAVKDIAPTLSHIQPFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGN 1023
            V GKL+RAVK    +L+  +P         YD  +E  GFE + E A  H+  Y +KL +
Sbjct: 971  VFGKLYRAVKS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTS 1030

Query: 1024 LLDYYGIKSEAEILSGSI----MRMSKSFTRRRD-AEAINLAVRSLRKEARTWFNAREGA 1083
            L+ YYG  +E EIL+G +    M +++   R  D  + I L+V+ L KEA  WF   E +
Sbjct: 1031 LMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---EKS 1090

Query: 1084 DSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCIYDKLMQIKENNLRKR 1092
              +       ASAWYYVTY+       N   ++  +LSFPW + D L+ IK  N +++
Sbjct: 1091 CEDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQ 1121

[Close]

BLAST of IVF0023048 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 511.5 bits (1316), Expect = 1.7e-144
Identity = 372/1074 (34.64%), Postives = 539/1074 (50.19%), Query Frame = 0


Query: 92   TYMYMLKDLLLCFGCQVSSEKFRVLWEG-NVDLV--------------TFGIGMRKMNFH 151
            T  Y L  + L  G  VS + F V W    VD +              +     +    H
Sbjct: 127  TVPYKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMH 186

Query: 152  LKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQVLCSGQI-FDNPILNFFMEVP--- 211
               N  +Y+LEL   +I  ++ +      +  L++Q+  S ++ +     + +  VP   
Sbjct: 187  AVIN-CDYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYRTADDDIYDTVPGDL 246

Query: 212  ---DDQWVRTTDFTSSCSIGQSSSLCLKLPNGLE------LPTFKQNFAYYEEFEHEFRL 271
               DD W+RTTDFT   +IG+  S  + +    E      L  F+      E      R+
Sbjct: 247  LDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRI 306

Query: 272  IDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLLDTSFYRLVERIITI 331
             +E        D    +  +  +  +EI+F +N+++  G      L   F+ L      +
Sbjct: 307  RNEPCFGEPVSDHFFCIHHKEGI-SFEIMFLVNSVLHRGVFNQFQLTERFFDL------L 366

Query: 332  RIEFVEHALEKLFHLKECNYDPSNF------------LTEQFRRYSRHPPNSPVISLDDG 391
            R +  +  +  L HL  C Y    F            + +  +    H  +  +  +   
Sbjct: 367  RNQPKDVNIASLKHL--CTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRL 426

Query: 392  LV---YVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRS-------TDLLPRM 451
            ++     Y   PEV +SNRVLR +    + FLRV+F+DE    + S         ++  +
Sbjct: 427  VITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDL 486

Query: 452  SSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIR 511
            +S S   KT +++R+ S+L +G  +  + + FLAFS++QLRD S W FA       + I+
Sbjct: 487  TSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIK 546

Query: 512  AWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQHGEVKYVFSDGIG 571
             WMG F+  KN AK AAR+G  F S+   + V  +E +  +PDIE ++G   YVFSDGIG
Sbjct: 547  TWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE-RNG---YVFSDGIG 606

Query: 572  KISSKFAKEVATKCGFQA--VPSAFQIRYGGYKGVVAVDPYST--IKLSLRKSMCKFESD 631
             I+   A EV  K        P A+QIRY G+KGVVA  P  +  I+L+LR SM KF S 
Sbjct: 607  TITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSK 666

Query: 632  NIKLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEAL 691
            +  L++   +++QP FLNRQ+ITLLS LGV DEIF   Q   + +L+ IL D   A E L
Sbjct: 667  HTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL 726

Query: 692  ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGC 751
               S  E  N    ML  G+KP  EP+L  ML + R ++L  LR KSRIF+ +GR +MGC
Sbjct: 727  -TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGC 786

Query: 752  LDETMTLEYGQVFVQISGGRHRNL--SESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVR 811
            LDE   LE+GQ F+Q+S     N        F   +    V++G V +AKNPCLHPGDVR
Sbjct: 787  LDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVR 846

Query: 812  VLKAVNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPP--RQ 871
            +L+AV+VP L+HM DC++    F     RPH NE SGSDLDGD+YFV WD +LIPP  + 
Sbjct: 847  ILEAVDVPQLHHMYDCLI----FPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKS 906

Query: 872  ITPMDYTPALPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCV 931
               M Y  A    L R V  +DI ++F   + N+ LG I NAH   AD+  + A    C+
Sbjct: 907  YPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECL 966

Query: 932  ELAKQFSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAP 991
             LA+  + AVDFPKTG    +P HL  K +PDFM K D  +Y+S  ++G+L+R VK++  
Sbjct: 967  LLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYD 1026

Query: 992  TLSHI-QPFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEI 1051
              +      + D +   YD  +E+ GFED   +A+ HK  YD +L  LL  Y ++ E EI
Sbjct: 1027 EDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEI 1086

Query: 1052 LSGSIMRMSKSFTRRRD--AEAINLAVRSLRKEARTWFNA----REGADSNSDDLF--AK 1093
            ++G I  M K  ++++    E +  +  SL+KE R  F       E       ++    K
Sbjct: 1087 VTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKK 1146

[Close]

BLAST of IVF0023048 vs. TAIR 10
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-23
Identity = 161/687 (23.44%), Postives = 260/687 (37.85%), Query Frame = 0


Query: 345 VISLDDGLVYVYFCGPEVN----------VSNRVLRHFSKYI------DNFLRVSFVDEE 404
           ++  D G  + Y C    N          +   +L H   ++      DN L V F D  
Sbjct: 194 MLQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVKFAD-- 253

Query: 405 WDKMRSTDLLPRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWM 464
                       +   S     D Y     + KNGI+IG + +QF  F      +    +
Sbjct: 254 ------------VQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDL 313

Query: 465 FASGPDIDAAYIRAWMGDFRHIKNP------------------------AKYAARLGQSF 524
             S   +   +IR     F  ++NP                        A Y AR     
Sbjct: 314 --STKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLIL 373

Query: 525 GSSTEALSV--ASNEREIIPDIEVQHGEVKYVF---------SDGIGKISSKFAK----- 584
            S T+ L V       + I DI     + K V          SDG G IS   A+     
Sbjct: 374 -SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLN 433

Query: 585 ---------EVATKCGFQAVPSAFQIR--YGGY--KG-----------VVAVDPYSTIKL 644
                    E   +  +Q  P   Q R  Y GY  KG            V V P S IK+
Sbjct: 434 IFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRP-SMIKV 493

Query: 645 SLRKSMCKFESDNIKLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDA 704
           S   S+  F + N    V   +  +   L++ L+ LLS  G+ +E F       +E+  +
Sbjct: 494 SKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKS 553

Query: 705 ILTDPLKAQEALELMSPGENTNILKEMLKCGY---KPDVEPYLSMMLQTFRASKLLELRT 764
           I  +   A  A       ++ N   +M+  G    +P ++ YLS++L+T +     +L+ 
Sbjct: 554 IFYNKRAALNAALNYGEMDDQN-AAQMILVGIPLDEPHLKNYLSILLKTEKN----DLKA 613

Query: 765 KSRIFIPNGRAMMGCLDETMTLEYGQVFVQISGGRHRNLSESFAFNSGQEHCLVIEGKVT 824
             ++ +     +MG +D T  L+  +V V +  G+                   I G+V 
Sbjct: 614 -GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ-------------------ISGEVL 673

Query: 825 VAKNPCLHPGDVRVLKAVNVPGLYHMVDCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFV 884
           V +NP LH GD+ +LKA  V  L   V        F     R   +E +G D DGD+YF+
Sbjct: 674 VYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFI 733

Query: 885 CWDTELI-------PPRQITPMDYTPA--LPIELDRDVTTEDIQEYFV--NYMVNDSLGI 929
             + EL+       P   +TP   + +   P +L  +   E++ E F+   +  ++ +GI
Sbjct: 734 SRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGI 793

[Close]

BLAST of IVF0023048 vs. TAIR 10
Match: AT2G19910.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-19
Identity = 133/552 (24.09%), Postives = 222/552 (40.22%), Query Frame = 0


Query: 543  FQIRYGGY--KGVVAVD---PYSTIKLSLRKSMCKFESDNI--------KLDVLGHSK-Y 602
            F+I Y GY  KG    +   P  T++  +R SM K   D           L+V+  S   
Sbjct: 455  FRIFYNGYAVKGTFLTNKKLPPRTVQ--VRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPP 514

Query: 603  QPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNIL 662
            +   L+R L+ LLS  GV ++ F       +E+   I      A +A       + T   
Sbjct: 515  RKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYT--- 574

Query: 663  KEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETMTLEYGQV 722
             +M+  G   D EPYL   L     ++   L+   R  I     +MG +D T  L+  ++
Sbjct: 575  ADMILVGIPLD-EPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEI 634

Query: 723  FVQISGGRHRNLSESFAFNSGQEHCLVIEGKVTVAKNPCLHPGDVRVLKAVNVPGLYHMV 782
             V +  G+                   I G V V +NP LH GD+ VLKA  V  L   V
Sbjct: 635  CVILHSGQ-------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYV 694

Query: 783  DCVMLLTRFCTCLFRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMD----------- 842
                    F     R   +E +G D DGD+YF+  + +L+      P +           
Sbjct: 695  GNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLL--EHFKPSEPWVSSSKPSKI 754

Query: 843  YTPALPIELDRDVTTEDIQEYFV--NYMVNDSLGIIANAHTAFAD----------KEPFK 902
            Y    P EL  +   E++ + F+   +   D +G+ A+      D          KE ++
Sbjct: 755  YCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYE 814

Query: 903  ARSSPCVELAKQFSIAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFR 962
             R    ++L   +  A+D PK G    +P  L +K FP +ME+  +  + S +++G +F 
Sbjct: 815  -RKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIF- 874

Query: 963  AVKDIAPTLSHIQPFTRDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGI 1022
               D   + +  +P   ++++              YFED    KS+  DK  +  + Y  
Sbjct: 875  ---DTVDSHNAEEPPPSEISKLW------------YFEDEPVPKSHM-DKFTSWYENY-- 934

Query: 1023 KSEAEILSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNS--DDLFAK 1056
            +SE          MS++       +   L    +++  + ++ A    DSN   ++L+ +
Sbjct: 935  RSE----------MSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQ 948

The following BLAST results are available for this feature:

BLAST of IVF0023048 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQV2	0.0e+00	62.70	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1	[more]
Q0DXS3	1.3e-271	64.85	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
O82504	6.3e-205	39.02	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1	[more]
Q7XM31	9.1e-196	37.48	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q8LHH9	6.0e-147	35.87	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of IVF0023048 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPY1	0.0e+00	96.91	RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103502906 PE=3 SV=1	[more]
A0A5A7VKY3	0.0e+00	96.91	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0S1YD00	0.0e+00	96.29	RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=RDR1a PE=2 SV=1	[more]
E9NWK6	0.0e+00	91.26	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1a PE=2 SV=1	[more]
A0A0A0KSM9	0.0e+00	88.00	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239140 PE=3 SV=...	[more]

BLAST of IVF0023048 vs. NCBI nr


Match Name	Identity	Description
XP_008465250.1	96.91	PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465251.1 PREDICT...	[more]
NP_001315397.1	96.29	RNA-dependent RNA polymerase 1 [Cucumis melo] >ALM88236.1 RNA-dependent RNA poly...	[more]
NP_001267692.1	91.26	RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_031740799.1 RNA-depend...	[more]
XP_038891504.1	85.90	RNA-dependent RNA polymerase 1 isoform X1 [Benincasa hispida] >XP_038891505.1 RN...	[more]
XP_022943173.1	80.28	RNA-dependent RNA polymerase 1-like isoform X2 [Cucurbita moschata] >XP_02294317...	[more]

BLAST of IVF0023048 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14790.1	0.0e+00	62.70	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	4.4e-206	39.02	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	1.7e-144	34.64	RNA-dependent RNA polymerase 6	[more]
AT2G19930.1	4.2e-23	23.44	RNA-dependent RNA polymerase family protein	[more]
AT2G19910.1	1.3e-19	24.09	RNA-dependent RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 355..927 e-value: 3.4E-174 score: 580.7
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 2..1099
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..88 e-value: 7.9E-6 score: 27.7
None	No IPR available	PANTHER	PTHR23079:SF44	RNA-DEPENDENT RNA POLYMERASE	coord: 2..1099
None	No IPR available	CDD	cd00590	RRM_SF	coord: 5..73 e-value: 5.60471E-8 score: 48.8405
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 3..89 score: 9.132199
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023048.1	IVF0023048.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0001172	transcription, RNA-templated
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding