IVF0023004 (gene) Melon (IVF77) v1

Overview
NameIVF0023004
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein CHROMATIN REMODELING 5 isoform X1
Locationchr12: 8511094 .. 8511402 (-)
RNA-Seq ExpressionIVF0023004
SyntenyIVF0023004
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTTGTTGAGCGATTTCGGTTGCAATATCCCAGCACCGGAGGCTCATTCAGCAAGTCAGTTTTTAGCGGAATGGTTCAAGGCACGTGGGGGGGTCGCCCAGAAATGGGCTTAGGCTATGTTCGTACGTGGGGTGTGGACGTCCGGAGACGAGACGACATGAGTTCCGTCGGTGTTCCGTTTGTGGTGTCGTTAATTCCTGCTCACGTGCGTGTCAGGCTCTTGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTGGAACGATGGCTCGATGACAACGGCGACAGTGGGGACAATGTAG

mRNA sequence

ATGTCCGTTGTTGAGCGATTTCGGTTGCAATATCCCAGCACCGGAGGCTCATTCAGCAAGTCAGTTTTTAGCGGAATGGTTCAAGGCACGTGGGGGGGTCGCCCAGAAATGGGCTTAGGCTATGTTCGTACGTGGGGTGTGGACGTCCGGAGACGAGACGACATGAGTTCCGTCGGTGTTCCGTTTGTGGTGTCGTTAATTCCTGCTCACGTGCGTGTCAGGCTCTTGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTGGAACGATGGCTCGATGACAACGGCGACAGTGGGGACAATGTAG

Coding sequence (CDS)

ATGTCCGTTGTTGAGCGATTTCGGTTGCAATATCCCAGCACCGGAGGCTCATTCAGCAAGTCAGTTTTTAGCGGAATGGTTCAAGGCACGTGGGGGGGTCGCCCAGAAATGGGCTTAGGCTATGTTCGTACGTGGGGTGTGGACGTCCGGAGACGAGACGACATGAGTTCCGTCGGTGTTCCGTTTGTGGTGTCGTTAATTCCTGCTCACGTGCGTGTCAGGCTCTTGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTGGAACGATGGCTCGATGACAACGGCGACAGTGGGGACAATGTAG

Protein sequence

MSVVERFRLQYPSTGGSFSKSVFSGMVQGTWGGRPEMGLGYVRTWGVDVRRRDDMSSVGVPFVVSLIPAHVRVRLLIGNSAIRWIVRRWNDGSMTTATVGTM
Homology
BLAST of IVF0023004 vs. ExPASy TrEMBL
Match: A0A5A7STC6 (Protein CHROMATIN REMODELING 5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00790 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.0e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MSVVERFRLQYPSTGGSFSKSVFSGMVQGTWGGRPEMGLGYVRTWGVDVRRRDDMSSVGV 60
          MSVVERFRLQYPSTGGSFSKSVFSGMVQGTWGGRPEMGLGYVRTWGVDVRRRDDMSSVGV
Sbjct: 1  MSVVERFRLQYPSTGGSFSKSVFSGMVQGTWGGRPEMGLGYVRTWGVDVRRRDDMSSVGV 60

Query: 61 PFVVSLIPAHVRVRLLIGNSAIRWIVRRWNDGSMTTAT 99
          PFVVSLIPAHVRVRLLIGNSAIRWIVRRWNDGSMTTAT
Sbjct: 61 PFVVSLIPAHVRVRLLIGNSAIRWIVRRWNDGSMTTAT 98

BLAST of IVF0023004 vs. ExPASy TrEMBL
Match: A0A5A7UEI9 (Putative magnesium transporter NIPA2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00040 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.3e-06
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 37 MGLGYVRTWGVDVRRRDDMSSVGVPFVVSL 67
          MGLG VRTWGVDVRRRDDMSSVGVPFVV L
Sbjct: 43 MGLGCVRTWGVDVRRRDDMSSVGVPFVVPL 72

BLAST of IVF0023004 vs. ExPASy TrEMBL
Match: A0A5A7SNP7 (Ras-related protein RABH1b-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00840 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.3e-06
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 37 MGLGYVRTWGVDVRRRDDMSSVGVPFVVSL 67
          MGLG VRTWGVDVRRRDDMSSVGVPFVV L
Sbjct: 1  MGLGCVRTWGVDVRRRDDMSSVGVPFVVPL 30

BLAST of IVF0023004 vs. ExPASy TrEMBL
Match: A0A5D3D549 (Putative magnesium transporter NIPA2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9182G00010 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 37 MGLGYVRTWGVDVRRRDDMSSVGVPFVVSL 67
          MGLG VRTWG+DVRRRDDMSSVGVPFVV L
Sbjct: 1  MGLGCVRTWGMDVRRRDDMSSVGVPFVVPL 30

BLAST of IVF0023004 vs. NCBI nr
Match: KAA0032607.1 (protein CHROMATIN REMODELING 5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (510), Expect = 5.95e-64
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MSVVERFRLQYPSTGGSFSKSVFSGMVQGTWGGRPEMGLGYVRTWGVDVRRRDDMSSVGV 60
          MSVVERFRLQYPSTGGSFSKSVFSGMVQGTWGGRPEMGLGYVRTWGVDVRRRDDMSSVGV
Sbjct: 1  MSVVERFRLQYPSTGGSFSKSVFSGMVQGTWGGRPEMGLGYVRTWGVDVRRRDDMSSVGV 60

Query: 61 PFVVSLIPAHVRVRLLIGNSAIRWIVRRWNDGSMTTAT 98
          PFVVSLIPAHVRVRLLIGNSAIRWIVRRWNDGSMTTAT
Sbjct: 61 PFVVSLIPAHVRVRLLIGNSAIRWIVRRWNDGSMTTAT 98

BLAST of IVF0023004 vs. NCBI nr
Match: KAA0032824.1 (ras-related protein RABH1b-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 7.54e-09
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 37 MGLGYVRTWGVDVRRRDDMSSVGVPFVVSL 66
          MGLG VRTWGVDVRRRDDMSSVGVPFVV L
Sbjct: 1  MGLGCVRTWGVDVRRRDDMSSVGVPFVVPL 30

BLAST of IVF0023004 vs. NCBI nr
Match: KAA0053634.1 (putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa] >TYK00803.1 putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 8.53e-09
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 37 MGLGYVRTWGVDVRRRDDMSSVGVPFVVSL 66
          MGLG VRTWGVDVRRRDDMSSVGVPFVV L
Sbjct: 43 MGLGCVRTWGVDVRRRDDMSSVGVPFVVPL 72

BLAST of IVF0023004 vs. NCBI nr
Match: KAA0039079.1 (putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa] >TYK18662.1 putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 9.46e-09
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 37 MGLGYVRTWGVDVRRRDDMSSVGVPFVVSL 66
          MGLG VRTWG+DVRRRDDMSSVGVPFVV L
Sbjct: 1  MGLGCVRTWGMDVRRRDDMSSVGVPFVVPL 30

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7STC66.0e-49100.00Protein CHROMATIN REMODELING 5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A5A7UEI96.3e-0693.33Putative magnesium transporter NIPA2 isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7SNP76.3e-0693.33Ras-related protein RABH1b-like isoform X1 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5D3D5491.4e-0590.00Putative magnesium transporter NIPA2 isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
KAA0032607.15.95e-64100.00protein CHROMATIN REMODELING 5 isoform X1 [Cucumis melo var. makuwa][more]
KAA0032824.17.54e-0993.33ras-related protein RABH1b-like isoform X1 [Cucumis melo var. makuwa][more]
KAA0053634.18.53e-0993.33putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0039079.19.46e-0990.00putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa] >TYK1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023004.1IVF0023004.1mRNA