IVF0022948 (gene) Melon (IVF77) v1

Overview


Name	IVF0022948
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L24
Location	chr06: 19452428 .. 19455391 (-)
RNA-Seq Expression	IVF0022948
Synteny	IVF0022948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACGTTGTCGTTTTAAAGCGCAACTACACAACTCTTTCTATCCGCCTTCGCTATTTTGCAGTTTGCAATTGCTTATCCATTTGTGAAGCTCTCCAATACTTCTCAGTTCTCAGAGCCAAGCCTACAGCACCAAAAATGGCAGCCATGGCTGCGCTTCAGAGCTCCATGACCGCTCTTTCCCTCTCTTCCAATTCCTTCCTCGGCCAACGCCTTCCACCGCCCATAATTTACGCTGCGCCCGTAAGATTTTCTACTCTTCCCTTCCTTCCTAATTGCTTCCTTATCGTGCTTCATTTTACCCTGTTTTTCTTACCTATTGCCTCTCAATTCCATTCTTGTAACGAATTTCCCTGCTTGGGTGAACTGTGGAGTGAAATTTAGGCAATGGATGATCTTCTTTTTCCCTCTTTCTGTTGTCTATCTGTTATTTAACATTGTGATATTGTTTTATATACTATCTGTAACTATTCCTATTCAAATGAAAGTACATTTCCACATCATTCAAAAAAAAGTAATTGGATCATGTTGCAGGAACCAATGTGCAAGAATAAATCAAATTTAAGAATTTCGTCAAATTTTACGCAAACCACATTTTCCCCCGAACCTTTGAAATTGTTAATTACTTCCCATCCCATAGTTGCTATAGGTTCCAAACGGAAATTGATTTACTTACTGTTCATATTTGAGCTATTTTGTGCTATATCTTGTTGAAGTAATTCGCAGGATAGTTCGTATCTAAGTATCTCTTGTTTAACTTGCAGATAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAAGGTTTAGTATTCTTGCCTCTTAACGACTTCATTCTTTTTCAACTCATTTAAATTTAATGGAAGATAAAATATAGTACGTTCTATCTTGAGTATATTTGGTGGAAAATAAATGAAGACGTGAAACAGCACGTTGGATTGTTGACTTGCTGAGAAAAATGATATACCTGCTGCTACATTGTGATATGATAATGTATTGTGGTCAAAGTAAGCTTGATAATGTATGGTGGTCAAAGTAAGCTTGATAATGTATGGTGGTCAAAGTAAGCTTGATAATGTATGGTGGTCAAAGTAAGCTTGATAATGTATTATGGTCAAAGTAAGCTTAATCCAAGAGTAATTGACATGACCTTCCATTCTAGAAGTGGAAGGTTCGATCCTCTATCCCCACATTGTCGTACTAAAAGGAAAAGATAAAGTATTGTGATTGAATCATTTTAGAAGTCTCTTTCATTAACCATCGTCTAATGGAAATGTAAGCAATATTCCTTCTAAGAGGCTAATTTGTAAGATTTTCAATGGAATTGTAGCTATTTGATGAAGCACTATCAAATTCTTCTTCGACAGTGCTTCAAATTATAGCCAAGCATACAACTTAGGAACTCAAGGACAACATATACCTATAGAATAGATCCTGTTCAAGTGAGATCTTCACCTTTGATATGGAAGTTCTCTTCACCATTAAAAACCTCCTTTCATAGTTAAAAGCACCCCCAAGCATTCTTATACACCCAACTATCAAATATAGGTTTTACAATTATATTAGGGAAATTGCAATCTAAGAATAAGATATTTAAAATGTGTCACACACGTTTTCTATTTTGCAACTATGACACTTTTTAGTGTATGAAGTGGATCGAGTGTATCAAGTGTATATTAATAGTGTCTTGAGTGTATCTCATTAGTTACTAGGTGTGTTGAGTCCGTACTTTCTGAAATTTCACGGGCTGAGCTTGTTTTTTACCTAGTTAATTTGGGCTATGCATCTAATTGTTAAAACTTATTCTGCCAAATTTGCAAGACCTTTATATTATGGTTGTTCTCAAGGCTTCTTACCTGGAATGGTCGTTAAATTCTCCCTTCTAAATGAACTCAGCCACAAAAGTAAACATTTATAGTGATATGTTTGATGTTTCTGTTCTTGCATTTCTTCTATTTGGCATGATATCAAAATTGTGAAGAAATAATTGGTAATTCTACTACTGTTTCTCCCATATTTACTGCTTAAAGTTTTTGCTTACTTATTGGCAGCTTAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCAGTATTACACAAAATGCATGTCAAGGTTGGAGACACAGTGAAAGTTATAGCTGGTCGTGATAAGGGAAAAATTGGAGAAATCACCAAAATTTTTAAACATAATAGCAAAGTGGTAGTGAACGAAATAAATTTGAAGACAAAGCATGTGAAGAGCAGAGAGGAGGAAGAACAAGGACAAATTATTAAGGTTTGTTTCTGCTCTTCATAACAAATTCAAATCATCAACTATTGTCTATACAAAATTAAACTTCATCATCAACCAGCAAACTCCTAGACACTCTCAAGAAAATGAAATTCATCTGGGTGTTTCAAAAAGTGACCAATATTTTAGTGTTAGCTGGATTTATATTTGATTAGTTCACCCCATAGTCCAATTTCTTGTTGTTAACTTTCATCACTTGGTTCGGATATTTCAGATCGAAGCACCCATCCACAGCTCCAATGTGATGCTTTACTCAAAAGAGCAGAATGTAACGAGCCGGGTTGGTCACAAAATTCTTGAAGATGGAAAACGAGTACGTTACCTCATAAAAACTGGGGAAATAATTGACAGCACTGAAAATTGGAAAAAATTGAAGGAAGCGAAGAGCAAAACTGAAGTGGCTACAACTGCCTAAGAATCGGTTTTCAACTGTACCTACCACTGATGTAGTTATGTATCTTGAAGGGTATTTCAATAGCCTGTTATCTTTTTTTTAGCAAATATTTTTGTTGCGTTCTTTTTGTTCATTGATGCATAGTAAAGTGATATCGCGTTGGTAGTTTATTGTTTATCGATAATCTATAACATATTGAGACATATATATATATATATCCTCAATTATTCTAATAGATTCATCAAAAAGATATTAGAAGGAGAAACTTTACCTCTC

mRNA sequence

ATACGTTGTCGTTTTAAAGCGCAACTACACAACTCTTTCTATCCGCCTTCGCTATTTTGCAGTTTGCAATTGCTTATCCATTTGTGAAGCTCTCCAATACTTCTCAGTTCTCAGAGCCAAGCCTACAGCACCAAAAATGGCAGCCATGGCTGCGCTTCAGAGCTCCATGACCGCTCTTTCCCTCTCTTCCAATTCCTTCCTCGGCCAACGCCTTCCACCGCCCATAATTTACGCTGCGCCCATAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAAGCTTAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCAGTATTACACAAAATGCATGTCAAGGTTGGAGACACAGTGAAAGTTATAGCTGGTCGTGATAAGGGAAAAATTGGAGAAATCACCAAAATTTTTAAACATAATAGCAAAGTGGTAGTGAACGAAATAAATTTGAAGACAAAGCATGTGAAGAGCAGAGAGGAGGAAGAACAAGGACAAATTATTAAGATCGAAGCACCCATCCACAGCTCCAATGTGATGCTTTACTCAAAAGAGCAGAATGTAACGAGCCGGGTTGGTCACAAAATTCTTGAAGATGGAAAACGAGTACGTTACCTCATAAAAACTGGGGAAATAATTGACAGCACTGAAAATTGGAAAAAATTGAAGGAAGCGAAGAGCAAAACTGAAGTGGCTACAACTGCCTAAGAATCGGTTTTCAACTGTACCTACCACTGATGTAGTTATGTATCTTGAAGGGTATTTCAATAGCCTGTTATCTTTTTTTTAGCAAATATTTTTGTTGCGTTCTTTTTGTTCATTGATGCATAGTAAAGTGATATCGCGTTGGTAGTTTATTGTTTATCGATAATCTATAACATATTGAGACATATATATATATATATCCTCAATTATTCTAATAGATTCATCAAAAAGATATTAGAAGGAGAAACTTTACCTCTC

Coding sequence (CDS)

ATGGCAGCCATGGCTGCGCTTCAGAGCTCCATGACCGCTCTTTCCCTCTCTTCCAATTCCTTCCTCGGCCAACGCCTTCCACCGCCCATAATTTACGCTGCGCCCATAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAAGCTTAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCAGTATTACACAAAATGCATGTCAAGGTTGGAGACACAGTGAAAGTTATAGCTGGTCGTGATAAGGGAAAAATTGGAGAAATCACCAAAATTTTTAAACATAATAGCAAAGTGGTAGTGAACGAAATAAATTTGAAGACAAAGCATGTGAAGAGCAGAGAGGAGGAAGAACAAGGACAAATTATTAAGATCGAAGCACCCATCCACAGCTCCAATGTGATGCTTTACTCAAAAGAGCAGAATGTAACGAGCCGGGTTGGTCACAAAATTCTTGAAGATGGAAAACGAGTACGTTACCTCATAAAAACTGGGGAAATAATTGACAGCACTGAAAATTGGAAAAAATTGAAGGAAGCGAAGAGCAAAACTGAAGTGGCTACAACTGCCTAA

Protein sequence

MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQGQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKEAKSKTEVATTA

Homology

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BLAST of IVF0022948 vs. ExPASy Swiss-Prot
Match: P11893 (50S ribosomal protein L24, chloroplastic OS=Pisum sativum OX=3888 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.7e-74
Identity = 150/193 (77.72%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 3   AMAALQSSMTALSLSSNSFLGQRLPP----PIIYAAPITSKEKPCLIVMKLKRWERKECK 62
           AMA+LQSSM++LSLSSNSFLGQ L P    P +   P    EK CLIVMKLKRWERKECK
Sbjct: 5   AMASLQSSMSSLSLSSNSFLGQPLSPITLSPFLQGKP---TEKKCLIVMKLKRWERKECK 64

Query: 63  PNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEE 122
           PNSLPVLHK+HVKVGDTVKVI+G +KG+IGEITKIFKHNS V+V +INLKTKHVKS +E 
Sbjct: 65  PNSLPVLHKLHVKVGDTVKVISGHEKGQIGEITKIFKHNSSVIVKDINLKTKHVKSNQEG 124

Query: 123 EQGQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKL 182
           E GQI K+EAPIHSSNVMLYSKE++VTSRVGHK+LE+GKRVRYLIKTGEIIDS ENWKKL
Sbjct: 125 EPGQINKVEAPIHSSNVMLYSKEKDVTSRVGHKVLENGKRVRYLIKTGEIIDSEENWKKL 184

Query: 183 KEAKSKT-EVATT 191
           KEA  KT EVA T
Sbjct: 185 KEANKKTAEVAAT 194

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BLAST of IVF0022948 vs. ExPASy Swiss-Prot
Match: P92959 (50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL24 PE=2 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 3.1e-72
Identity = 142/196 (72.45%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLS-SNSFLGQRLPPPIIYA--APITSKEKPCLIVMKLKRWERKEC 60
           MA M+ALQSS T+LSLS S+SFLGQRL  PI  +  +P+   E PCL++ KLKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 61  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREE 120
           KPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +V+ ++NLKTKH+KSREE
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120

Query: 121 EEQGQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKK 180
            E GQI+KIEAPIHSSNVMLYSKE++V SRVGHK+LEDG++VRYLIKTGE+ID+ E WK 
Sbjct: 121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180

Query: 181 LKEAKSK--TEVATTA 192
           LKEAK K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 196

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BLAST of IVF0022948 vs. ExPASy Swiss-Prot
Match: P27683 (50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL24 PE=1 SV=2)

HSP 1 Score: 265.8 bits (678), Expect = 3.8e-70
Identity = 140/192 (72.92%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSS T+LSLSSNSFLGQRL P        T    PCLIVM++KRWERK+CKPN
Sbjct: 1   MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLP LHKMHVKVGDTVKVI+G +KGKIGEI+KI KHNS V++ ++NLKTKHVKS+EE EQ
Sbjct: 61  SLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEA IHSSNVMLYSKEQ V SRVGHKILEDG++VRYLIKTGEI+D+ + WK+++ 
Sbjct: 121 GQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQN 180

Query: 181 AK-SKTEVATTA 192
            K S+T VA  A
Sbjct: 181 KKESETAVAVAA 192

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BLAST of IVF0022948 vs. ExPASy Swiss-Prot
Match: Q02764 (50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL24 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69
Identity = 137/188 (72.87%), Postives = 151/188 (80.32%), Query Frame = 0


Query: 4   MAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPNSLP 63
           MAALQSS   L   S SF GQR  PP+     + S E PCLI  KLKRWERKECKPNSLP
Sbjct: 1   MAALQSSFAGL---STSFFGQRFSPPLSLPPLVKSTEGPCLIQAKLKRWERKECKPNSLP 60

Query: 64  VLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQGQI 123
           VLHKMHVK+GDTVK+I+G DKGK+GEIT+I KHNSKVVV ++NLKTKHVKSR E+E GQI
Sbjct: 61  VLHKMHVKLGDTVKIISGHDKGKVGEITEIIKHNSKVVVKDVNLKTKHVKSRSEDEPGQI 120

Query: 124 IKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKEAKS 183
           +KIEAPIHSSNVMLYSKEQ V SRVGHK L++GKRVRYLIKTGEIIDS ENWKK  + K 
Sbjct: 121 VKIEAPIHSSNVMLYSKEQKVASRVGHKTLDNGKRVRYLIKTGEIIDSAENWKKAVKEKE 180

Query: 184 KTEVATTA 192
           KT  A  A
Sbjct: 181 KTTEAVAA 185

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BLAST of IVF0022948 vs. ExPASy Swiss-Prot
Match: B1XJS8 (50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplX PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.9e-33
Identity = 67/113 (59.29%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 58  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREE 117
           + +S P  HKMHVK GDTV+VI+GRDKGK+GE+ K    +SKVVV ++N++TKHVK ++E
Sbjct: 4   RKSSTPTRHKMHVKTGDTVQVISGRDKGKVGEVIKTLPKSSKVVVKDVNIRTKHVKPQQE 63

Query: 118 EEQGQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIID 171
            E GQI   EAPIHSSNVM YS+++ V SR+G+++ EDG++VR L KTGE+ID
Sbjct: 64  GESGQIQTFEAPIHSSNVMHYSEKEKVASRIGYQLTEDGRKVRVLKKTGEVID 116

[Close]

BLAST of IVF0022948 vs. ExPASy TrEMBL
Match: A0A5D3BUT2 (50S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00400 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.3e-97
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 AKSKTEVATTA 192
           AKSKTEVATTA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of IVF0022948 vs. ExPASy TrEMBL
Match: A0A1S3BTL8 (50S ribosomal protein L24, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493382 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.3e-97
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 AKSKTEVATTA 192
           AKSKTEVATTA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of IVF0022948 vs. ExPASy TrEMBL
Match: A0A0A0L6H1 (KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G098540 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.0e-94
Identity = 183/191 (95.81%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMTALSLSSNSFLGQRLPPP IYAAPITSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPV+HKMHVK+GDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQ+V SRVGHK+LEDGKRVRYLIKTGEIIDSTENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 AKSKTEVATTA 192
           A SK EVATTA
Sbjct: 181 ANSKAEVATTA 191

[Close]

BLAST of IVF0022948 vs. ExPASy TrEMBL
Match: A0A6J1CNZ8 (50S ribosomal protein L24, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012769 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.0e-89
Identity = 176/191 (92.15%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRLP P IYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNV SRVGHK LE G+RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180

Query: 181 AKSKTEVATTA 192
            KSKTEVA TA
Sbjct: 181 EKSKTEVAATA 191

[Close]

BLAST of IVF0022948 vs. ExPASy TrEMBL
Match: A0A6J1ESD2 (50S ribosomal protein L24, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436064 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.2e-88
Identity = 173/191 (90.58%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAM +LQSSMTALSLSS+SFLGQRL P  I+AAP+TSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMVSLQSSMTALSLSSSSFLGQRLQPSTIFAAPVTSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV V EINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVTVKEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIK+EAPIHSSNVMLYSKE++V SRVGHK LE+GKRVRYLIKTGEIIDST+NWKKLKE
Sbjct: 121 GQIIKVEAPIHSSNVMLYSKEKDVASRVGHKTLENGKRVRYLIKTGEIIDSTDNWKKLKE 180

Query: 181 AKSKTEVATTA 192
            KSKTEVATTA
Sbjct: 181 EKSKTEVATTA 191

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BLAST of IVF0022948 vs. NCBI nr
Match: XP_008452322.1 (PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo] >KAA0046925.1 50S ribosomal protein L24 [Cucumis melo var. makuwa] >TYK03227.1 50S ribosomal protein L24 [Cucumis melo var. makuwa])

HSP 1 Score: 361 bits (926), Expect = 2.32e-125
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 AKSKTEVATTA 191
           AKSKTEVATTA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of IVF0022948 vs. NCBI nr
Match: XP_004149305.1 (50S ribosomal protein L24, chloroplastic [Cucumis sativus] >XP_031739317.1 50S ribosomal protein L24, chloroplastic [Cucumis sativus])

HSP 1 Score: 349 bits (896), Expect = 8.71e-121
Identity = 183/191 (95.81%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMTALSLSSNSFLGQRLPPP IYAAPITSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPV+HKMHVK+GDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQ+V SRVGHK+LEDGKRVRYLIKTGEIIDSTENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 AKSKTEVATTA 191
           A SK EVATTA
Sbjct: 181 ANSKAEVATTA 191

[Close]

BLAST of IVF0022948 vs. NCBI nr
Match: XP_038903308.1 (50S ribosomal protein L24, chloroplastic [Benincasa hispida])

HSP 1 Score: 345 bits (886), Expect = 2.91e-119
Identity = 181/191 (94.76%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMTALSLSSNSFLGQRLPPP IYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+VNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNV SRVGHK LE+GKRVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDSVENWKKLKE 180

Query: 181 AKSKTEVATTA 191
             SKTEVATTA
Sbjct: 181 ENSKTEVATTA 191

[Close]

BLAST of IVF0022948 vs. NCBI nr
Match: XP_022142723.1 (50S ribosomal protein L24, chloroplastic [Momordica charantia])

HSP 1 Score: 335 bits (858), Expect = 5.40e-115
Identity = 176/191 (92.15%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRLP P IYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNV SRVGHK LE G+RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180

Query: 181 AKSKTEVATTA 191
            KSKTEVA TA
Sbjct: 181 EKSKTEVAATA 191

[Close]

BLAST of IVF0022948 vs. NCBI nr
Match: XP_022929523.1 (50S ribosomal protein L24, chloroplastic [Cucurbita moschata])

HSP 1 Score: 330 bits (845), Expect = 5.17e-113
Identity = 173/191 (90.58%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAM +LQSSMTALSLSS+SFLGQRL P  I+AAP+TSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMVSLQSSMTALSLSSSSFLGQRLQPSTIFAAPVTSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV V EINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVTVKEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIK+EAPIHSSNVMLYSKE++V SRVGHK LE+GKRVRYLIKTGEIIDST+NWKKLKE
Sbjct: 121 GQIIKVEAPIHSSNVMLYSKEKDVASRVGHKTLENGKRVRYLIKTGEIIDSTDNWKKLKE 180

Query: 181 AKSKTEVATTA 191
            KSKTEVATTA
Sbjct: 181 EKSKTEVATTA 191

[Close]

BLAST of IVF0022948 vs. TAIR 10
Match: AT5G54600.1 (Translation protein SH3-like family protein )

HSP 1 Score: 272.7 bits (696), Expect = 2.2e-73
Identity = 142/196 (72.45%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLS-SNSFLGQRLPPPIIYA--APITSKEKPCLIVMKLKRWERKEC 60
           MA M+ALQSS T+LSLS S+SFLGQRL  PI  +  +P+   E PCL++ KLKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 61  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREE 120
           KPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +V+ ++NLKTKH+KSREE
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120

Query: 121 EEQGQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKK 180
            E GQI+KIEAPIHSSNVMLYSKE++V SRVGHK+LEDG++VRYLIKTGE+ID+ E WK 
Sbjct: 121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180

Query: 181 LKEAKSK--TEVATTA 192
           LKEAK K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 196

[Close]

BLAST of IVF0022948 vs. TAIR 10
Match: AT5G54600.2 (Translation protein SH3-like family protein )

HSP 1 Score: 235.0 bits (598), Expect = 5.2e-62
Identity = 129/196 (65.82%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 1   MAAMAALQSSMTALSLS-SNSFLGQRLPPPIIYA--APITSKEKPCLIVMKLKRWERKEC 60
           MA M+ALQSS T+LSLS S+SFLGQRL  PI  +  +P+   E PCL++ KLKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 61  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREE 120
           KPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +                 
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTI----------------- 120

Query: 121 EEQGQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKK 180
              GQI+KIEAPIHSSNVMLYSKE++V SRVGHK+LEDG++VRYLIKTGE+ID+ E WK 
Sbjct: 121 --PGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 177

Query: 181 LKEAKSK--TEVATTA 192
           LKEAK K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 177

[Close]

BLAST of IVF0022948 vs. TAIR 10
Match: AT5G23535.1 (KOW domain-containing protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-12
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 73  GDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQGQIIKIEAPIHS 132
           GD V +I G+DKG+ G I ++ +  ++V+V   NL  KH+K   + E G I  +EAP+H+
Sbjct: 18  GDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGGPDHE-GGIFTVEAPLHA 77

Query: 133 SNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTG 167
           SNV +         +VG K LEDG +VR    TG
Sbjct: 78  SNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTG 110

The following BLAST results are available for this feature:

BLAST of IVF0022948 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11893	5.7e-74	77.72	50S ribosomal protein L24, chloroplastic OS=Pisum sativum OX=3888 GN=RPL24 PE=2 ...	[more]
P92959	3.1e-72	72.45	50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
P27683	3.8e-70	72.92	50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL24 P...	[more]
Q02764	1.1e-69	72.87	50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL24 P...	[more]
B1XJS8	4.9e-33	59.29	50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]

BLAST of IVF0022948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUT2	1.3e-97	100.00	50S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BTL8	1.3e-97	100.00	50S ribosomal protein L24, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493382...	[more]
A0A0A0L6H1	4.0e-94	95.81	KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G098540 PE=3 SV...	[more]
A0A6J1CNZ8	1.0e-89	92.15	50S ribosomal protein L24, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1ESD2	3.2e-88	90.58	50S ribosomal protein L24, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of IVF0022948 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452322.1	2.32e-125	100.00	PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo] >KAA0046925.1...	[more]
XP_004149305.1	8.71e-121	95.81	50S ribosomal protein L24, chloroplastic [Cucumis sativus] >XP_031739317.1 50S r...	[more]
XP_038903308.1	2.91e-119	94.76	50S ribosomal protein L24, chloroplastic [Benincasa hispida]	[more]
XP_022142723.1	5.40e-115	92.15	50S ribosomal protein L24, chloroplastic [Momordica charantia]	[more]
XP_022929523.1	5.17e-113	90.58	50S ribosomal protein L24, chloroplastic [Cucurbita moschata]	[more]

BLAST of IVF0022948 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54600.1	2.2e-73	72.45	Translation protein SH3-like family protein	[more]
AT5G54600.2	5.2e-62	65.82	Translation protein SH3-like family protein	[more]
AT5G23535.1	1.3e-12	40.43	KOW domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 69..96 e-value: 5.7E-7 score: 39.2
IPR005824	KOW	PFAM	PF00467	KOW	coord: 72..102 e-value: 8.3E-9 score: 35.1
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 63..168 e-value: 6.4E-34 score: 118.3
IPR003256	Ribosomal protein L24	PFAM	PF17136	ribosomal_L24	coord: 105..169 e-value: 2.6E-22 score: 79.0
IPR003256	Ribosomal protein L24	TIGRFAM	TIGR01079	TIGR01079	coord: 67..169 e-value: 3.2E-35 score: 118.7
IPR003256	Ribosomal protein L24	PANTHER	PTHR12903	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	coord: 4..188
IPR003256	Ribosomal protein L24	HAMAP	MF_01326_B	Ribosomal_L24_B	coord: 68..164 score: 18.878784
None	No IPR available	PANTHER	PTHR12903:SF11	50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC	coord: 4..188
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 73..90
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 73..137 e-value: 1.52404E-26 score: 94.5037
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 66..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022948.1	IVF0022948.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding