IVF0022886 (gene) Melon (IVF77) v1

Overview
NameIVF0022886
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr02: 10239886 .. 10240050 (-)
RNA-Seq ExpressionIVF0022886
SyntenyIVF0022886
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACTCTTGTCGCCAATTGCTCGAGAAAGTAAGTAGCAAAGACATGGCTAACGCGCGCAAGGAGGAGTTTGGAGACAAACTGCACCTTGGCGAGATAACTTCCATCACTTGTGTCCGGAAAGGAGAAGAAGTATGGGTATTTGGCATCGAGAGGTTCTAA

mRNA sequence

ATGGCCAACTCTTGTCGCCAATTGCTCGAGAAAGTAAGTAGCAAAGACATGGCTAACGCGCGCAAGGAGGAGTTTGGAGACAAACTGCACCTTGGCGAGATAACTTCCATCACTTGTGTCCGGAAAGGAGAAGAAGTATGGGTATTTGGCATCGAGAGGTTCTAA

Coding sequence (CDS)

ATGGCCAACTCTTGTCGCCAATTGCTCGAGAAAGTAAGTAGCAAAGACATGGCTAACGCGCGCAAGGAGGAGTTTGGAGACAAACTGCACCTTGGCGAGATAACTTCCATCACTTGTGTCCGGAAAGGAGAAGAAGTATGGGTATTTGGCATCGAGAGGTTCTAA

Protein sequence

MANSCRQLLEKVSSKDMANARKEEFGDKLHLGEITSITCVRKGEEVWVFGIERF
Homology
BLAST of IVF0022886 vs. ExPASy TrEMBL
Match: A0A5D3C951 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00010 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 1  MANSCRQLLEKVSSKDMANARKEEFGDKLHLGEITSITCVRKGEEVWVFGIER 54
          MA +CRQLLE+V+SKDMAN  KEEF   LH+ EITSITCV KGE+VWV   ER
Sbjct: 1  MARACRQLLERVTSKDMANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAER 53

BLAST of IVF0022886 vs. ExPASy TrEMBL
Match: A0A5D3DDG5 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00260 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.2e-09
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 10 EKVSSKDMANARKEEFGDKLHLGEITSITCVRKGEEVWVFGIER 54
          +K SSKDMANA KE+FGD+L+L +ITSI CV KGE+VWV+G ER
Sbjct: 38 QKASSKDMANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

BLAST of IVF0022886 vs. ExPASy TrEMBL
Match: A0A5D3BHD0 (LINE-1 reverse transcriptase isogeny OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00010 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 17 MANARKEEFGDKLHLGEITSITCVRKGEEVWVFGIER 54
          MAN RKEEF +KLHLG+ TSI C  KG +VW  G+ER
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGVER 37

BLAST of IVF0022886 vs. ExPASy TrEMBL
Match: A0A5A7V332 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001430 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 17 MANARKEEFGDKLHLGEITSITCVRKGEEVWVFGIER 54
          MAN RKEEF +KLHLG+ TSI C  KG +VW  G+ER
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGVER 37

BLAST of IVF0022886 vs. ExPASy TrEMBL
Match: A0A5D3CY29 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00960 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-05
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 1   MANSCRQLLEKVSSKDMANARKEEFGDKLHLGEITSITCVRKGEEVWVFGIER 54
           + N+   L+E+ SSKD+ N  +EEFGD LH G+ITSI C  +  +VW  G ER
Sbjct: 82  LPNAYCPLVERPSSKDVDNECQEEFGDNLHFGKITSIICTPERGQVWAIGAER 134

BLAST of IVF0022886 vs. NCBI nr
Match: TYK07860.1 (uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.28e-15
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 1  MANSCRQLLEKVSSKDMANARKEEFGDKLHLGEITSITCVRKGEEVWVFGIER 53
          MA +CRQLLE+V+SKDMAN  KEEF   LH+ EITSITCV KGE+VWV   ER
Sbjct: 1  MARACRQLLERVTSKDMANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAER 53

BLAST of IVF0022886 vs. NCBI nr
Match: KAA0026294.1 (cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >TYK21490.1 cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 4.80e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 10 EKVSSKDMANARKEEFGDKLHLGEITSITCVRKGEEVWVFGIER 53
          +K SSKDMANA KE+FGD+L+L +ITSI CV KGE+VWV+G ER
Sbjct: 38 QKASSKDMANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

BLAST of IVF0022886 vs. NCBI nr
Match: TYK21449.1 (hypothetical protein E5676_scaffold609G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 3.23e-08
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 17 MANARKEEFGDKLHLGEITSITCVRKGEEVW 47
          M NA KEEFGDKLHLG ITSI CV KGE+VW
Sbjct: 1  MVNAYKEEFGDKLHLGGITSIICVLKGEQVW 31

BLAST of IVF0022886 vs. NCBI nr
Match: KAA0051792.1 (hypothetical protein E6C27_scaffold60G002010 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.02e-08
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 17 MANARKEEFGDKLHLGEITSITCVRKGEEVW 47
          M NA KEEFGDKLHLG ITSI CV KGE+VW
Sbjct: 1  MVNAYKEEFGDKLHLGGITSIICVLKGEQVW 31

BLAST of IVF0022886 vs. NCBI nr
Match: KAA0032002.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 5.22e-08
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 1   MANSCRQLLEKVSSKDMANARKEEFGDKLHLGEITSITCVRKGEEVWVFGIER 53
           + N+   L+E+ SSKD+ N  +EEFGD LH G+ITSI C  +  +VW  G ER
Sbjct: 82  LPNAYCPLVERPSSKDVDNECQEEFGDNLHFGKITSIICTPERGQVWAIGAER 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C9512.6e-1169.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DDG57.2e-0970.45Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa ... [more]
A0A5D3BHD03.7e-0564.86LINE-1 reverse transcriptase isogeny OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7V3323.7e-0564.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CY296.3e-0549.06Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
TYK07860.11.28e-1569.81uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa][more]
KAA0026294.14.80e-1270.45cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >... [more]
TYK21449.13.23e-0880.65hypothetical protein E5676_scaffold609G001190 [Cucumis melo var. makuwa][more]
KAA0051792.14.02e-0880.65hypothetical protein E6C27_scaffold60G002010 [Cucumis melo var. makuwa][more]
KAA0032002.15.22e-0849.06Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Tran... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022886.1IVF0022886.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane