IVF0022479 (gene) Melon (IVF77) v1

Overview


Name	IVF0022479
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like
Location	chr12: 640506 .. 641166 (-)
RNA-Seq Expression	IVF0022479
Synteny	IVF0022479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAGTGTCTGAATCCGGCGGGGGTGGTGCATCGGAGAGCACGGGGGAGGGTTGTTCATCGGCAACGGGAACGGGAACGGCAGCGGCGGCGGGGGTGGCTCCACCGAGCCGATATGAATCTCAAAAAAGAAGAGATTGGAACACTTTCTTACAATATTTGAAGAACCATAAGCCGCCACTGTGTTTAGCTCGATGCAGTGGTGCTCACGTGATCGAATTCTTGAAGTATTTGGATCAGTTCGGAAAAACGAAGGTCCATGCTTCCCCTGCCCTTACTTCGGTCACCCAAATCCACCTGCCCCCTGCCCCTGCCCCCTCAAACAAGCTTGGGGTAGCCTCGACGCTTTGATCGGCCGCCTCCGTGCCGCTTACGAAGAGAACGGTGGCCGCCCCGAATCCAACCATTTGCCGCACGTGCCGTCAGGATTTATCTCCGTGAGGTTCGCGAAGCTCAGGCTAAAGCCAGAGGAATTCCTTACGAGAAAAAGAAACGGAAAAGACCCGCCCCCACCGCCCCTCCGCCAGAGACTAGTACCTCCACCACCGCCACCACCACCACCGGGGATAATCAGCCTGAAACAACCGCTGGTGGCGGTGGTGACGATCCCGCCGTTGCTCCTCCGCCGTCCACAACCGCCGCTTCCACCTCCGTATAG

mRNA sequence

ATGGATTCAGTGTCTGAATCCGGCGGGGGTGGTGCATCGGAGAGCACGGGGGAGGGTTGTTCATCGGCAACGGGAACGGGAACGGCAGCGGCGGCGGGGGTGGCTCCACCGAGCCGATATGAATCTCAAAAAAGAAGAGATTGGAACACTTTCTTACAATATTTGAAGAACCATAAGCCGCCACTGTGTTTAGCTCGATGCAGTGGTGCTCACGTGATCGAATTCTTGAAGTATTTGGATCAGTTCGGAAAAACGAAGGTCCATGCTTCCCCTGCCCTTACTTCGCCTCGACGCTTTGATCGGCCGCCTCCGTGCCGCTTACGAAGAGAACGGTGGCCGCCCCGAATCCAACCATTTGCCGCACGTGCCGTCAGGATTTATCTCCGTGAGGTTCGCGAAGCTCAGGCTAAAGCCAGAGGAATTCCTTACGAGAAAAAGAAACGGAAAAGACCCGCCCCCACCGCCCCTCCGCCAGAGACTAGTACCTCCACCACCGCCACCACCACCACCGGGGATAATCAGCCTGAAACAACCGCTGGTGGCGGTGGTGACGATCCCGCCGTTGCTCCTCCGCCGTCCACAACCGCCGCTTCCACCTCCGTATAG

Coding sequence (CDS)

ATGGATTCAGTGTCTGAATCCGGCGGGGGTGGTGCATCGGAGAGCACGGGGGAGGGTTGTTCATCGGCAACGGGAACGGGAACGGCAGCGGCGGCGGGGGTGGCTCCACCGAGCCGATATGAATCTCAAAAAAGAAGAGATTGGAACACTTTCTTACAATATTTGAAGAACCATAAGCCGCCACTGTGTTTAGCTCGATGCAGTGGTGCTCACGTGATCGAATTCTTGAAGTATTTGGATCAGTTCGGAAAAACGAAGGTCCATGCTTCCCCTGCCCTTACTTCGCCTCGACGCTTTGATCGGCCGCCTCCGTGCCGCTTACGAAGAGAACGGTGGCCGCCCCGAATCCAACCATTTGCCGCACGTGCCGTCAGGATTTATCTCCGTGAGGTTCGCGAAGCTCAGGCTAAAGCCAGAGGAATTCCTTACGAGAAAAAGAAACGGAAAAGACCCGCCCCCACCGCCCCTCCGCCAGAGACTAGTACCTCCACCACCGCCACCACCACCACCGGGGATAATCAGCCTGAAACAACCGCTGGTGGCGGTGGTGACGATCCCGCCGTTGCTCCTCCGCCGTCCACAACCGCCGCTTCCACCTCCGTATAG

Protein sequence

MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPALTSPRRFDRPPPCRLRRERWPPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV

Homology

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BLAST of IVF0022479 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-37
Identity = 116/215 (53.95%), Postives = 127/215 (59.07%), Query Frame = 0


Query: 14  ESTGEGCSSATGTGT-AAAAGVAPP---SRYESQKRRDWNTFLQYLKNHKPPLCLARCSG 73
           + +G G SSA   G  A AA   PP   SRYESQKRRDWNTFLQYL+NH+PPL LARCSG
Sbjct: 2   DPSGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSG 61

Query: 74  AHVIEFLKYLDQFGKTKVHASP-ALTSPRRFDRPPPCRLRRERW---------------- 133
           AHVIEFL+YLDQFGKTKVHAS  A         P PC L R+ W                
Sbjct: 62  AHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPL-RQAWGSLDALIGRLRAAYEE 121

Query: 134 ---PPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKR---PAPTAPPPETSTSTTA 193
               P   PFAARAVRIYLREVR++QAKARGIPYEKKKRKR     P    P  S+S  A
Sbjct: 122 SGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSSAAA 181

Query: 194 TTTTGDNQPETTAGGGGDDPAVAPP-PSTTAASTS 201
               G    +T +GGG      A P  S TA S S
Sbjct: 182 AAAGGG---DTGSGGGAAATTTAQPGGSGTAPSAS 212

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BLAST of IVF0022479 vs. ExPASy Swiss-Prot
Match: A2Y3I2 (Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.5e-37
Identity = 109/208 (52.40%), Postives = 124/208 (59.62%), Query Frame = 0


Query: 30  AAAGVAPPSRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHA 89
           AAAG+   SRYESQKRRDWNTFLQYL+NHKPPL L RCSGAHVIEFLKYLDQFGKTKVHA
Sbjct: 61  AAAGL---SRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHA 120

Query: 90  SPALTSPRRFDRPPPCRL-RRERW-------------------PPRIQPFAARAVRIYLR 149
                     + P PC    R+ W                    P   PFAARAVRIYLR
Sbjct: 121 DGCAYFGEP-NPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLR 180

Query: 150 EVREAQAKARGIPYEKKKRK--------RPAPTAPPPETSTSTTATTTTG-----DNQPE 201
           EVREAQAKARGIPYEKK+++         P   APPP  +    AT T+G     D+  E
Sbjct: 181 EVREAQAKARGIPYEKKRKRGAAAAAAAPPVVVAPPPVVTAPDDATGTSGGAGEDDDDDE 240

[Close]

BLAST of IVF0022479 vs. ExPASy Swiss-Prot
Match: Q5W659 (Protein G1-like9 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L9 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.5e-37
Identity = 109/208 (52.40%), Postives = 124/208 (59.62%), Query Frame = 0


Query: 30  AAAGVAPPSRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHA 89
           AAAG+   SRYESQKRRDWNTFLQYL+NHKPPL L RCSGAHVIEFLKYLDQFGKTKVHA
Sbjct: 61  AAAGL---SRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHA 120

Query: 90  SPALTSPRRFDRPPPCRL-RRERW-------------------PPRIQPFAARAVRIYLR 149
                     + P PC    R+ W                    P   PFAARAVRIYLR
Sbjct: 121 DGCAYFGEP-NPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLR 180

Query: 150 EVREAQAKARGIPYEKKKRK--------RPAPTAPPPETSTSTTATTTTG-----DNQPE 201
           EVREAQAKARGIPYEKK+++         P   APPP  +    AT T+G     D+  E
Sbjct: 181 EVREAQAKARGIPYEKKRKRGAAAAAAAPPVVVAPPPVVTAPDDATGTSGGAGEDDDDDE 240

[Close]

BLAST of IVF0022479 vs. ExPASy Swiss-Prot
Match: B8AH02 (Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.5e-37
Identity = 107/218 (49.08%), Postives = 123/218 (56.42%), Query Frame = 0


Query: 7   SGGGGASESTGEGCSSATGTGTAAAAGVA---PPSRYESQKRRDWNTFLQYLKNHKPPLC 66
           +GGGG     G G SS+ G  ++A  G A    PSRYE+QKRRDWNTF QYL+NH+PPL 
Sbjct: 38  AGGGGGGGGDGAGGSSSAGASSSAGGGAATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLG 97

Query: 67  LARCSGAHVIEFLKYLDQFGKTKVH--ASPALTSPRRFDRPPPCRLRRERW--------- 126
           LA+CSGAHV+EFL+YLDQFGKTKVH  A P    P     P PC L R+ W         
Sbjct: 98  LAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHPNP-PAPCPCPL-RQAWGSLDALVGR 157

Query: 127 ----------PPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPETST 186
                      P   PFA RAVR+YLREVRE QA+ARG+ YEKKKRK+P           
Sbjct: 158 LRAAFEENGGRPESNPFAVRAVRLYLREVREHQARARGVSYEKKKRKKP----------- 217

Query: 187 STTATTTTGDNQPETTAGGGG---DDPAVAPPPSTTAA 198
                      QP  T+GGGG     P   PPPS  AA
Sbjct: 218 -----------QPADTSGGGGHPHPPPPPPPPPSAGAA 231

[Close]

BLAST of IVF0022479 vs. ExPASy Swiss-Prot
Match: Q0DZF3 (Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.5e-37
Identity = 107/218 (49.08%), Postives = 123/218 (56.42%), Query Frame = 0


Query: 7   SGGGGASESTGEGCSSATGTGTAAAAGVA---PPSRYESQKRRDWNTFLQYLKNHKPPLC 66
           +GGGG     G G SS+ G  ++A  G A    PSRYE+QKRRDWNTF QYL+NH+PPL 
Sbjct: 38  AGGGGGGGGDGAGGSSSAGASSSAGGGAATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLG 97

Query: 67  LARCSGAHVIEFLKYLDQFGKTKVH--ASPALTSPRRFDRPPPCRLRRERW--------- 126
           LA+CSGAHV+EFL+YLDQFGKTKVH  A P    P     P PC L R+ W         
Sbjct: 98  LAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHPNP-PAPCPCPL-RQAWGSLDALVGR 157

Query: 127 ----------PPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPETST 186
                      P   PFA RAVR+YLREVRE QA+ARG+ YEKKKRK+P           
Sbjct: 158 LRAAFEENGGRPESNPFAVRAVRLYLREVREHQARARGVSYEKKKRKKP----------- 217

Query: 187 STTATTTTGDNQPETTAGGGG---DDPAVAPPPSTTAA 198
                      QP  T+GGGG     P   PPPS  AA
Sbjct: 218 -----------QPADTSGGGGHPHPPPPPPPPPSAGAA 231

[Close]

BLAST of IVF0022479 vs. ExPASy TrEMBL
Match: A0A5A7UVV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00670 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.3e-83
Identity = 181/221 (81.90%), Postives = 183/221 (82.81%), Query Frame = 0


Query: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60
           MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPA-LTSPRRFDRPPPCRLRRERW------- 120
           PLCLARCSGAHVIEFLKYLDQFGKTKVHASP           P PC L ++ W       
Sbjct: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPL-KQAWGSLDALI 120

Query: 121 ------------PPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET 180
                        P   PFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET
Sbjct: 121 GRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET 180

Query: 181 STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 202
           STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV
Sbjct: 181 STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 220

[Close]

BLAST of IVF0022479 vs. ExPASy TrEMBL
Match: A0A1S3C5Y5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo OX=3656 GN=LOC103497051 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.3e-83
Identity = 181/221 (81.90%), Postives = 183/221 (82.81%), Query Frame = 0


Query: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60
           MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPA-LTSPRRFDRPPPCRLRRERW------- 120
           PLCLARCSGAHVIEFLKYLDQFGKTKVHASP           P PC L ++ W       
Sbjct: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPL-KQAWGSLDALI 120

Query: 121 ------------PPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET 180
                        P   PFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET
Sbjct: 121 GRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET 180

Query: 181 STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 202
           STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV
Sbjct: 181 STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 220

[Close]

BLAST of IVF0022479 vs. ExPASy TrEMBL
Match: A0A6J1GCE7 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN=LOC111452872 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.0e-51
Identity = 141/227 (62.11%), Postives = 152/227 (66.96%), Query Frame = 0


Query: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60
           MDSV+ESGGGG+SE TGEG S+      AAAA  APPSRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVTESGGGGSSEPTGEGSSAGGSAPLAAAAAAAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHAS--PALTSPRRFDRPPPCRLRRERW------ 120
           PL LARCSGAHVIEFLKYLDQFGKTKVH S  P    P     P PC L ++ W      
Sbjct: 61  PLSLARCSGAHVIEFLKYLDQFGKTKVHGSGCPYFGHPNP-PAPCPCPL-KQAWGSLDAL 120

Query: 121 -------------PPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAP--TAPP 180
                         P   PFAARAVRIYLREVREAQAKARGIPYEKKKRKR A   + PP
Sbjct: 121 IGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRAAANVSVPP 180

Query: 181 P---ETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 202
           P     + S+++ T   D QPETTA G   D     PPSTTAAST+V
Sbjct: 181 PTDVSLAGSSSSATVGADIQPETTAAG---DQTGDAPPSTTAASTTV 222

[Close]

BLAST of IVF0022479 vs. ExPASy TrEMBL
Match: A0A6J1KEN4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=LOC111493161 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.8e-50
Identity = 143/227 (63.00%), Postives = 154/227 (67.84%), Query Frame = 0


Query: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60
           MDSV+ESGGGG+SE TGEG SSA G+   AA   APPSRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVTESGGGGSSEPTGEG-SSAGGSAPLAA---APPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHAS--PALTSPRRFDRPPPCRLRRERW------ 120
           PL LARCSGAHVIEFLKYLDQFGKTKVH S  P    P     P PC L ++ W      
Sbjct: 61  PLSLARCSGAHVIEFLKYLDQFGKTKVHGSGCPYFGHPNP-PAPCPCPL-KQAWGSLDAL 120

Query: 121 -------------PPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAP--TAPP 180
                         P   PFAARAVRIYLREVREAQAKARGIPYEKKKRKR A   + PP
Sbjct: 121 IGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRAATNVSVPP 180

Query: 181 P---ETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 202
           P     + S+++ T  GD QPETTA G   D     PPSTTAAST+V
Sbjct: 181 PTDVSLAGSSSSATVGGDIQPETTASG---DQTGDAPPSTTAASTTV 218

[Close]

BLAST of IVF0022479 vs. ExPASy TrEMBL
Match: A0A0A0M0W2 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G533430 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 4.7e-45
Identity = 132/224 (58.93%), Postives = 137/224 (61.16%), Query Frame = 0


Query: 1   MDSVSES-GGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHK 60
           MDSVSES GGGGASEST EGCSSATG G     G APPSRYESQKRRDWNTFLQYLKNHK
Sbjct: 1   MDSVSESGGGGGASESTAEGCSSATGGG----GGGAPPSRYESQKRRDWNTFLQYLKNHK 60

Query: 61  PPLCLARCSGAHVIEFLKYLDQFGKTKVHASPA-LTSPRRFDRPPPCRLRRERW------ 120
           PPLCLARCSGAHVIEFLKYLDQFGKTKVHASP           P PC L ++ W      
Sbjct: 61  PPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPL-KQAWGSLDAL 120

Query: 121 -------------PPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPE 180
                         P   PFAARAVRIYLRE                   R  P  PPP 
Sbjct: 121 IGRLRAAYEENGGRPESNPFAARAVRIYLRE-------------------RLVPPPPPPP 180

Query: 181 TSTSTTATTTTGDNQPETTA--GGGGDDPAVAPPPSTTAASTSV 202
              S          QP+TTA  GGGGDDPA+ PPPSTTAAST+V
Sbjct: 181 QIISLK------QPQPKTTAGGGGGGDDPALPPPPSTTAASTTV 194

[Close]

BLAST of IVF0022479 vs. NCBI nr
Match: KAA0060022.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo var. makuwa])

HSP 1 Score: 315 bits (806), Expect = 1.85e-106
Identity = 181/221 (81.90%), Postives = 183/221 (82.81%), Query Frame = 0


Query: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60
           MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPA-LTSPRRFDRPPPCRLRRERWP------ 120
           PLCLARCSGAHVIEFLKYLDQFGKTKVHASP           P PC L+ + W       
Sbjct: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLK-QAWGSLDALI 120

Query: 121 -------------PRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET 180
                        P   PFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET
Sbjct: 121 GRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET 180

Query: 181 STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 201
           STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV
Sbjct: 181 STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 220

[Close]

BLAST of IVF0022479 vs. NCBI nr
Match: XP_008457336.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo])

HSP 1 Score: 315 bits (806), Expect = 2.53e-106
Identity = 181/221 (81.90%), Postives = 183/221 (82.81%), Query Frame = 0


Query: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60
           MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPA-LTSPRRFDRPPPCRLRRERWP------ 120
           PLCLARCSGAHVIEFLKYLDQFGKTKVHASP           P PC L+ + W       
Sbjct: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLK-QAWGSLDALI 120

Query: 121 -------------PRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET 180
                        P   PFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET
Sbjct: 121 GRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPET 180

Query: 181 STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 201
           STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV
Sbjct: 181 STSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 220

[Close]

BLAST of IVF0022479 vs. NCBI nr
Match: XP_011648517.2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Cucumis sativus] >KAE8653290.1 hypothetical protein Csa_023261 [Cucumis sativus])

HSP 1 Score: 270 bits (690), Expect = 8.92e-89
Identity = 165/224 (73.66%), Postives = 170/224 (75.89%), Query Frame = 0


Query: 1   MDSVSESGGGG-ASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHK 60
           MDSVSESGGGG ASEST EGCSSATG G    A VAPPSRYESQKRRDWNTFLQYLKNHK
Sbjct: 1   MDSVSESGGGGGASESTAEGCSSATGGGGGGGAAVAPPSRYESQKRRDWNTFLQYLKNHK 60

Query: 61  PPLCLARCSGAHVIEFLKYLDQFGKTKVHASPA-LTSPRRFDRPPPCRLRRERWP----- 120
           PPLCLARCSGAHVIEFLKYLDQFGKTKVHASP           P PC L+ + W      
Sbjct: 61  PPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLK-QAWGSLDAL 120

Query: 121 --------------PRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPE 180
                         P   PFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPP 
Sbjct: 121 IGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPA 180

Query: 181 TSTSTTATTTTGDNQPETTAGGGG--DDPAVAPPPSTTAASTSV 201
             TST+ATTT  DNQPETTAGGGG  DDPA+ PPPSTTAAST+V
Sbjct: 181 -ETSTSATTTPADNQPETTAGGGGGGDDPALPPPPSTTAASTTV 222

[Close]

BLAST of IVF0022479 vs. NCBI nr
Match: XP_038893975.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Benincasa hispida])

HSP 1 Score: 236 bits (603), Expect = 1.59e-75
Identity = 155/230 (67.39%), Postives = 162/230 (70.43%), Query Frame = 0


Query: 1   MDSVSESGGGGASES-TGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHK 60
           MDSVSE GGGGASE  T EG S   G G+A  A  APPSRYESQKRRDWNTFLQYLKNHK
Sbjct: 1   MDSVSEPGGGGASEGGTAEGSSGGGGGGSAPTA--APPSRYESQKRRDWNTFLQYLKNHK 60

Query: 61  PPLCLARCSGAHVIEFLKYLDQFGKTKVHASPA-LTSPRRFDRPPPCRLRRERWP----- 120
           PPLCLARCSGAHVIEFLKYLDQFGKTKVHASP           P PC L+ + W      
Sbjct: 61  PPLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLK-QAWGSLDAL 120

Query: 121 --------------PRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTA--PP 180
                         P   PFAARAVRIYLREVREAQAKARGIPYEKKKRKRPA +A  PP
Sbjct: 121 IGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAASASAPP 180

Query: 181 P------ETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 201
           P      ETSTST A    GD+Q ETT+GGGGDDP  APPPSTTAAST+V
Sbjct: 181 PDPQVVSETSTSTAAA---GDHQAETTSGGGGDDPTGAPPPSTTAASTTV 224

[Close]

BLAST of IVF0022479 vs. NCBI nr
Match: XP_022949557.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita moschata] >XP_022949558.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita moschata])

HSP 1 Score: 209 bits (532), Expect = 8.85e-65
Identity = 141/227 (62.11%), Postives = 152/227 (66.96%), Query Frame = 0


Query: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60
           MDSV+ESGGGG+SE TGEG S+      AAAA  APPSRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVTESGGGGSSEPTGEGSSAGGSAPLAAAAAAAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHAS--PALTSPRRFDRPPPCRLRRERWP----- 120
           PL LARCSGAHVIEFLKYLDQFGKTKVH S  P    P     P PC L+ + W      
Sbjct: 61  PLSLARCSGAHVIEFLKYLDQFGKTKVHGSGCPYFGHPNP-PAPCPCPLK-QAWGSLDAL 120

Query: 121 --------------PRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAP--TAPP 180
                         P   PFAARAVRIYLREVREAQAKARGIPYEKKKRKR A   + PP
Sbjct: 121 IGRLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRAAANVSVPP 180

Query: 181 P---ETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 201
           P     + S+++ T   D QPETTA G   D     PPSTTAAST+V
Sbjct: 181 PTDVSLAGSSSSATVGADIQPETTAAG---DQTGDAPPSTTAASTTV 222

[Close]

BLAST of IVF0022479 vs. TAIR 10
Match: AT5G58500.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-37
Identity = 96/178 (53.93%), Postives = 111/178 (62.36%), Query Frame = 0


Query: 29  AAAAGVAPPSRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVH 88
           AAA+  + PSRYESQKRRDWNTFLQYL+NHKPPL L+RCSGAHV+EFLKYLDQFGKTKVH
Sbjct: 9   AAASSSSSPSRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVH 68

Query: 89  ASPALTSPRRFDRPPP-----CRLRRERWP--------------------PRIQPFAARA 148
           A    T+   F +P P     C L ++ W                     P   PFAA+A
Sbjct: 69  A----TACPFFGQPNPPSQCTCPL-KQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKA 128

Query: 149 VRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPETSTSTTATTTTGDNQPETTAGG 182
           VRIYL+EVR+ QAKARGIPY+KKKRKRP           + TAT   GD      +GG
Sbjct: 129 VRIYLKEVRQTQAKARGIPYDKKKRKRP----------HTDTATPIAGDGDDAEGSGG 171

[Close]

BLAST of IVF0022479 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-37
Identity = 102/178 (57.30%), Postives = 107/178 (60.11%), Query Frame = 0


Query: 35  APPSRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASPALT 94
           A PSRYESQKRRDWNTFLQYLKNHKPPL L+RCSGAHVIEFLKYLDQFGKTKVH + A  
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA-ACP 86

Query: 95  SPRRFDRPPPC----------------RLR----RERWPPRIQPFAARAVRIYLREVREA 154
                  P PC                RLR         P   PFAARAVRIYLREVRE+
Sbjct: 87  YFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRES 146

Query: 155 QAKARGIPYEKKKRKRPAPTAPPPETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPP 193
           QAKARGIPYEKKKRKRP    P   T     A++   D  P      G    A A PP
Sbjct: 147 QAKARGIPYEKKKRKRP----PTVTTVRVDVASSRQSDGDP---CNVGAPSVAEAVPP 196

[Close]

BLAST of IVF0022479 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-36
Identity = 86/167 (51.50%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 21  SSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLD 80
           +S++ + ++  +G    SRYE+QKRRDWNTF QYL+NH+PPL L+RCSGAHV+EFL+YLD
Sbjct: 30  TSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLD 89

Query: 81  QFGKTKVHA--SPALTSPRRFDRPPPCRL-RRERW-------------------PPRIQP 140
           QFGKTKVH    P    P   + P PC    R+ W                    P   P
Sbjct: 90  QFGKTKVHTHLCPFFGHP---NPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNP 149

Query: 141 FAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPETSTSTT 166
           F ARAVR+YLREVR++QAKARGI YEKKKRKRP P  PP + + S++
Sbjct: 150 FGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQPAISSS 193

[Close]

BLAST of IVF0022479 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-33
Identity = 88/183 (48.09%), Postives = 112/183 (61.20%), Query Frame = 0


Query: 12  ASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAH 71
           +S  TG     AT   +++++  A  SRYE+QKRRDWNTF QYL+NH+PPL L+RCSGAH
Sbjct: 27  SSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 86

Query: 72  VIEFLKYLDQFGKTKVHASPA-LTSPRRFDRPPPCRLRRERW------------------ 131
           V+EFL+YLDQFGKTKVH +            P PC L R+ W                  
Sbjct: 87  VLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPL-RQAWGSLDALIGRLRAAFEENG 146

Query: 132 -PPRIQPFAARAVRIYLREVREAQAKARGIPYEKKKRKRPAPTAPPPETSTSTTATTTTG 175
             P   PF ARAVR+YLREVR+ Q+KARG+ YEKKKRKRP P       S+ST++++   
Sbjct: 147 GKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLP-------SSSTSSSSAVA 201

[Close]

BLAST of IVF0022479 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-32
Identity = 80/152 (52.63%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 34  VAPP--SRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVH--- 93
           + PP  SRYE+QKRRDWNTF QYL+NH+PPL L  CSGAHV+EFL+YLDQFGKTKVH   
Sbjct: 18  LTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQN 77

Query: 94  -ASPALTSPRRFDRPPPCRLRRERW-------------------PPRIQPFAARAVRIYL 153
            A   L +P     P PC L R+ W                   PP   PF +RAVR++L
Sbjct: 78  CAFFGLPNP---PAPCPCPL-RQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFL 137

Query: 154 REVREAQAKARGIPYEKKKRK--RPAPTAPPP 159
           REVR+ QAKARG+ YEKK+++  R  P   PP
Sbjct: 138 REVRDFQAKARGVSYEKKRKRVNRQKPQTQPP 165

The following BLAST results are available for this feature:

BLAST of IVF0022479 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2XED8	2.6e-37	53.95	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
A2Y3I2	3.5e-37	52.40	Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1	[more]
Q5W659	3.5e-37	52.40	Protein G1-like9 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L9 PE=1 SV=1	[more]
B8AH02	4.5e-37	49.08	Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1	[more]
Q0DZF3	4.5e-37	49.08	Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1	[more]

BLAST of IVF0022479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVV8	4.3e-83	81.90	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C5Y5	4.3e-83	81.90	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1GCE7	2.0e-51	62.11	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KEN4	4.8e-50	63.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0M0W2	4.7e-45	58.93	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G533430 PE=3 S...	[more]

BLAST of IVF0022479 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060022.1	1.85e-106	81.90	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo var. makuwa]	[more]
XP_008457336.1	2.53e-106	81.90	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo]	[more]
XP_011648517.2	8.92e-89	73.66	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Cucumis sativus] >KAE8653290.1 hypot...	[more]
XP_038893975.1	1.59e-75	67.39	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Benincasa hispida]	[more]
XP_022949557.1	8.85e-65	62.11	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita moschata] >XP_0229495...	[more]

BLAST of IVF0022479 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58500.1	1.2e-37	53.93	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.6e-37	57.30	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.3e-36	51.50	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.4e-33	48.09	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.2e-32	52.63	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 37..93 e-value: 5.8E-28 score: 97.6
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 39..147 score: 47.110287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR31165:SF18	PROTEIN G1-LIKE8	coord: 5..109
None	No IPR available	PANTHER	PTHR31165:SF18	PROTEIN G1-LIKE8	coord: 113..198
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 113..198
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 5..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022479.1	IVF0022479.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus