IVF0022221 (gene) Melon (IVF77) v1

Overview
NameIVF0022221
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr09: 7253424 .. 7253726 (+)
RNA-Seq ExpressionIVF0022221
SyntenyIVF0022221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACAAAGGGTTACTGCCGATGCACTATCCACCGACATGGTCAACACGTCGACAGTGGAGAACTACCGATGTCTAATAACGACATCGCAAATAGGTTACTGTCGACGTCGTCATGTACATCAGCGTACATGAACCACCGAGGCAGCATCGACAGACCTTCTAACGACGTCGCGTCGATAGAACGATCATTCACTACTACAGAAACAGACTCTCTTGACAGTTCTAAACTTATTCTTGACGGTTTTAAAATCCTCATTGAAGCCAATGCCAAGAAAATCAAAGTTGTTGACAATTGGTAA

mRNA sequence

ATGTTGACAAAGGGTTACTGCCGATGCACTATCCACCGACATGGTCAACACGTCGACAGTGGAGAACTACCGATGTCTAATAACGACATCGCAAATAGGTTACTGTCGACGTCGTCATGTACATCAGCGTACATGAACCACCGAGGCAGCATCGACAGACCTTCTAACGACGTCGCGTCGATAGAACGATCATTCACTACTACAGAAACAGACTCTCTTGACAGTTCTAAACTTATTCTTGACGGTTTTAAAATCCTCATTGAAGCCAATGCCAAGAAAATCAAAGTTGTTGACAATTGGTAA

Coding sequence (CDS)

ATGTTGACAAAGGGTTACTGCCGATGCACTATCCACCGACATGGTCAACACGTCGACAGTGGAGAACTACCGATGTCTAATAACGACATCGCAAATAGGTTACTGTCGACGTCGTCATGTACATCAGCGTACATGAACCACCGAGGCAGCATCGACAGACCTTCTAACGACGTCGCGTCGATAGAACGATCATTCACTACTACAGAAACAGACTCTCTTGACAGTTCTAAACTTATTCTTGACGGTTTTAAAATCCTCATTGAAGCCAATGCCAAGAAAATCAAAGTTGTTGACAATTGGTAA

Protein sequence

MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDNW
Homology
[Close]
BLAST of IVF0022221 vs. ExPASy TrEMBL
Match: A0A5A7TC06 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001200 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.5e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVAS 60
           MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVAS
Sbjct: 1   MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVAS 60

Query: 61  IERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN 100
           IERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN
Sbjct: 61  IERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN 99

[Close]
BLAST of IVF0022221 vs. NCBI nr
Match: KAA0040613.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK05657.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (503), Expect = 5.34e-58
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVAS 60
          MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVAS
Sbjct: 1  MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVAS 60

Query: 61 IERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN 99
          IERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN
Sbjct: 61 IERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN 99

The following BLAST results are available for this feature:
BLAST of IVF0022221 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TC066.5e-48100.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of IVF0022221 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040613.15.34e-58100.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of IVF0022221 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022221.1IVF0022221.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding