IVF0022196 (gene) Melon (IVF77) v1

Overview
NameIVF0022196
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr08: 11284451 .. 11284897 (+)
RNA-Seq ExpressionIVF0022196
SyntenyIVF0022196
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCCTCATATCTGTTTAGTTGGCTTGGCTCTTATTAGAATATGAAACTCATGACCAAATCCAAAGTGTTTACTAGCTTACTCCTTTTGCAAATAGGTAGTAGAGAGACCCATCCCTTTAATGGTGATCGTAGAGGGAGATAGGGAGTTTATCTTTAGTCTGTCAAGTTCCCCCACATGTTCTGTTCTTTATTGGTTGCTGTCTATCATATCCGACAATCAGTTCCTCCACATGAAGCTCGAACGTATTAATGCCACTAGATTTTCTGCTTGCAGTTCAGATGTCAGGCTGAGGTTCATAAAATCCCGGAGCCTGCTGCTTCTTGTGTAATCAGAGTGGAAGAGATTCATATGTTCATATTGTTAGGATCAAGAAGCAACCAGCTGAGTTTTATTTTTTGTTTTCAGAGCTCGAGGGACAGCGGATGATGACGCAGGCACGTAA

mRNA sequence

ATGTCCCCTCATATCTGTTTAGTTGGCTTGAGGGAGATAGGGAGTTTATCTTTAGTCTGTCAAGTTCCCCCACATGTTCTGTTCTTTATTGGTTGCTGTCTATCATATCCGACAATCACTCGAGGGACAGCGGATGATGACGCAGGCACGTAA

Coding sequence (CDS)

ATGTCCCCTCATATCTGTTTAGTTGGCTTGAGGGAGATAGGGAGTTTATCTTTAGTCTGTCAAGTTCCCCCACATGTTCTGTTCTTTATTGGTTGCTGTCTATCATATCCGACAATCACTCGAGGGACAGCGGATGATGACGCAGGCACGTAA

Protein sequence

MSPHICLVGLREIGSLSLVCQVPPHVLFFIGCCLSYPTITRGTADDDAGT
Homology
[Close]
BLAST of IVF0022196 vs. ExPASy TrEMBL
Match: A0A0A0KYT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G425720 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-12
Identity = 45/74 (60.81%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 1  MSPHICLVGL-REIGSLSLVCQVPPHVLFFIGCCLSYPTIT------------------- 51
          MSP ICLVGL REIGSLSLVCQV PHVLFFIGCCLSYPT +                   
Sbjct: 1  MSPDICLVGLAREIGSLSLVCQVSPHVLFFIGCCLSYPTTSSSTSGSNIIMPLDFLLAVQ 60

[Close]
BLAST of IVF0022196 vs. NCBI nr
Match: KGN54683.1 (hypothetical protein Csa_012862 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.09e-16
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1  MSPHICLVGL-REIGSLSLVCQVPPHVLFFIGCCLSYPTITRGTA 44
          MSP ICLVGL REIGSLSLVCQV PHVLFFIGCCLSYPT +  T+
Sbjct: 1  MSPDICLVGLAREIGSLSLVCQVSPHVLFFIGCCLSYPTTSSSTS 45

The following BLAST results are available for this feature:
BLAST of IVF0022196 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022196 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYT02.2e-1260.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G425720 PE=4 SV=1[more]
BLAST of IVF0022196 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54683.11.09e-1682.22hypothetical protein Csa_012862 [Cucumis sativus][more]
BLAST of IVF0022196 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022196.1IVF0022196.1mRNA