IVF0022108 (gene) Melon (IVF77) v1

Overview
NameIVF0022108
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionBeta-amylase
Locationchr09: 13306720 .. 13306953 (-)
RNA-Seq ExpressionIVF0022108
SyntenyIVF0022108
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCAGTCGTCTCCACGATCGACCACCACACGAAACTTTGTCACAAGTCGTCGCAAGCCTCAAGCATTCAAGTGTGAGTATGAGTCGATCCTCCTTTGTGAGCCGTACGCAAGCTGCACATCCATTTCCATCCAAGTCGATTTCCTCTTTCCGCCGAGCTGTACACATCTGCCTTCTTCCTCACCGAGCCACGTGTGCCAGCCTCTAGCTACCCAAGTCGATTCCCTTTAG

mRNA sequence

ATGCTCCAGTCGTCTCCACGATCGACCACCACACGAAACTTTGTCACAAGTCGTCGCAAGCCTCAAGCATTCAAGTGTGAGTATGAGTCGATCCTCCTTTGTGAGCCGTACGCAAGCTGCACATCCATTTCCATCCAAGTCGATTTCCTCTTTCCGCCGAGCTGTACACATCTGCCTTCTTCCTCACCGAGCCACGTGTGCCAGCCTCTAGCTACCCAAGTCGATTCCCTTTAG

Coding sequence (CDS)

ATGCTCCAGTCGTCTCCACGATCGACCACCACACGAAACTTTGTCACAAGTCGTCGCAAGCCTCAAGCATTCAAGTGTGAGTATGAGTCGATCCTCCTTTGTGAGCCGTACGCAAGCTGCACATCCATTTCCATCCAAGTCGATTTCCTCTTTCCGCCGAGCTGTACACATCTGCCTTCTTCCTCACCGAGCCACGTGTGCCAGCCTCTAGCTACCCAAGTCGATTCCCTTTAG

Protein sequence

MLQSSPRSTTTRNFVTSRRKPQAFKCEYESILLCEPYASCTSISIQVDFLFPPSCTHLPSSSPSHVCQPLATQVDSL
Homology
[Close]
BLAST of IVF0022108 vs. ExPASy TrEMBL
Match: A0A5D3DSU7 (Beta-amylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003180 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.3e-31
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 1  MLQSSPRSTTTRNFVTSRRKPQAFKCEYESILLCEPYASCTSISIQVDFLFPPSCTHLPS 60
          MLQSSP STTTRNFVTSRRKPQAFKCEYESILLCEPYAS TSISIQVDFLFPPSCTHLPS
Sbjct: 1  MLQSSPPSTTTRNFVTSRRKPQAFKCEYESILLCEPYASFTSISIQVDFLFPPSCTHLPS 60

Query: 61 SSPSHVCQPLATQV 75
           SPSHVCQPLATQ+
Sbjct: 61 FSPSHVCQPLATQL 74

[Close]
BLAST of IVF0022108 vs. NCBI nr
Match: TYK26663.1 (peptidyl-prolyl cis-trans isomerase CYP21-1 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 3.67e-39
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 1  MLQSSPRSTTTRNFVTSRRKPQAFKCEYESILLCEPYASCTSISIQVDFLFPPSCTHLPS 60
          MLQSSP STTTRNFVTSRRKPQAFKCEYESILLCEPYAS TSISIQVDFLFPPSCTHLPS
Sbjct: 1  MLQSSPPSTTTRNFVTSRRKPQAFKCEYESILLCEPYASFTSISIQVDFLFPPSCTHLPS 60

Query: 61 SSPSHVCQPLATQV 74
           SPSHVCQPLATQ+
Sbjct: 61 FSPSHVCQPLATQL 74

The following BLAST results are available for this feature:
BLAST of IVF0022108 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022108 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DSU77.3e-3194.59Beta-amylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003180 ... [more]
BLAST of IVF0022108 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK26663.13.67e-3994.59peptidyl-prolyl cis-trans isomerase CYP21-1 [Cucumis melo var. makuwa][more]
BLAST of IVF0022108 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022108.1IVF0022108.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000272 polysaccharide catabolic process
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0006508 proteolysis
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0102229 amylopectin maltohydrolase activity
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0016161 beta-amylase activity
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity