Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAATTTCTTTGGACTTTTGCTGTTCAGGAAGTCCTAAAGAAGATCGTGAAATTTGGAGCACAGCAAATTGGGTTAGCATGGGGGTTGAAGAAGAAGAAGCTGTCCAATTTGAGACATTAACAGAAAGAAGTTACATATCGATTCTGGGAGGCTATGGGTGAAAGAACTTCAAGATATTGCCTACGAAGCTGATGATCTACTGAATGAGCTTGTTTATGAAGATCTTCGAAGAACTGCGGAACAAACTGAGGTACGTGATTTTATTTCCATCTCACCATCCAAAAATCCCTTTTTGTTTCGTTGCGAGAAGGCCAAGAAAATGAAGAACACTACTCAAACTTTATACAAACACTATTGTGAGGCAAGTGCTTTAGAACTTGTTGGTGACCAATCCGCCACAGAGACAGAGGTTGCTCCTAAGCAGATTCGAGAAACAACCTCAAATCTCGACTTTGAAGTCGTATGA
mRNA sequence
ATGGCTGAATTTCTTTGGACTTTTGCTGTTCAGGAAGTCCTAAAGAAGATCGTGAAATTTGGAGCACAGCAAATTGGAAAGAAGTTACATATCGATTCTGGGAGGCTATGGGTGAAAGAACTTCAAGATATTGCCTACGAAGCTGATGATCTACTGAATGAGCTTGTTTATGAAGATCTTCGAAGAACTGCGGAACAAACTGAGGTACGTGATTTTATTTCCATCTCACCATCCAAAAATCCCTTTTTGTTTCGTTGCGAGAAGGCCAAGAAAATGAAGAACACTACTCAAACTTTATACAAACACTATTGTGAGGCAAGTGCTTTAGAACTTGTTGGTGACCAATCCGCCACAGAGACAGAGGTTGCTCCTAAGCAGATTCGAGAAACAACCTCAAATCTCGACTTTGAAGTCGTATGA
Coding sequence (CDS)
ATGGCTGAATTTCTTTGGACTTTTGCTGTTCAGGAAGTCCTAAAGAAGATCGTGAAATTTGGAGCACAGCAAATTGGAAAGAAGTTACATATCGATTCTGGGAGGCTATGGGTGAAAGAACTTCAAGATATTGCCTACGAAGCTGATGATCTACTGAATGAGCTTGTTTATGAAGATCTTCGAAGAACTGCGGAACAAACTGAGGTACGTGATTTTATTTCCATCTCACCATCCAAAAATCCCTTTTTGTTTCGTTGCGAGAAGGCCAAGAAAATGAAGAACACTACTCAAACTTTATACAAACACTATTGTGAGGCAAGTGCTTTAGAACTTGTTGGTGACCAATCCGCCACAGAGACAGAGGTTGCTCCTAAGCAGATTCGAGAAACAACCTCAAATCTCGACTTTGAAGTCGTATGA
Protein sequence
MAEFLWTFAVQEVLKKIVKFGAQQIGKKLHIDSGRLWVKELQDIAYEADDLLNELVYEDLRRTAEQTEVRDFISISPSKNPFLFRCEKAKKMKNTTQTLYKHYCEASALELVGDQSATETEVAPKQIRETTSNLDFEVV
Homology
BLAST of IVF0021972 vs. ExPASy TrEMBL
Match:
A0A5A7UFH2 (Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007060 PE=4 SV=1)
HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 130/139 (93.53%), Postives = 130/139 (93.53%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIGKKLHIDSGRLWVKELQDIAYEADDLLNELVYEDL 60
MAEFLWTFAVQEVLKKIVKFGAQQIG LWVKELQDIAYEADDLLNELVYEDL
Sbjct: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG---------LWVKELQDIAYEADDLLNELVYEDL 60
Query: 61 RRTAEQTEVRDFISISPSKNPFLFRCEKAKKMKNTTQTLYKHYCEASALELVGDQSATET 120
RRTAEQTEVRDFISISPSKNPFLFRCEKAKKMKNTTQTLYKHYCEASALELVGDQSATET
Sbjct: 61 RRTAEQTEVRDFISISPSKNPFLFRCEKAKKMKNTTQTLYKHYCEASALELVGDQSATET 120
Query: 121 EVAPKQIRETTSNLDFEVV 140
EVAPKQIRETTSNLDFEVV
Sbjct: 121 EVAPKQIRETTSNLDFEVV 130
BLAST of IVF0021972 vs. ExPASy TrEMBL
Match:
A0A5D3DPY5 (Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007080 PE=4 SV=1)
HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 102/172 (59.30%), Postives = 116/172 (67.44%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG----------------------------KKLHID 60
MAEFLWTFA+Q VLK IVK+GA+QIG K LH D
Sbjct: 1 MAEFLWTFAIQGVLKTIVKYGAEQIGAAWGLEKEASQLKKQLQSAAAILADINRKNLHHD 60
Query: 61 SGRLWVKELQDIAYEADDLLNELVYEDLRR-TAEQT----EVRDFISISPSKNPFLFRCE 120
S RLWV++LQ I YEADDLL+EL+YEDLRR T EQT +VRD ISISPS NPFLFRC+
Sbjct: 61 SVRLWVEDLQQIVYEADDLLDELIYEDLRRQTVEQTRKLRKVRDSISISPSTNPFLFRCK 120
Query: 121 KAKKMKNTTQTLYKHYCEASALELVGDQSAT-ETEVAPKQIRETTSNLDFEV 139
KAKK+KN TQ LYKHYC AS L LV ++S T TE A KQIRE TS L+F+V
Sbjct: 121 KAKKLKNITQALYKHYCAASPLGLVSNESNTIGTEAALKQIREATSMLNFQV 172
BLAST of IVF0021972 vs. ExPASy TrEMBL
Match:
A0A0A0KST5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266890 PE=4 SV=1)
HSP 1 Score: 167.9 bits (424), Expect = 2.9e-38
Identity = 100/170 (58.82%), Postives = 112/170 (65.88%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG----------------------------KKLHID 60
MAEFLWTFAVQEVLKKIV FGA+QI KK H
Sbjct: 1 MAEFLWTFAVQEVLKKIVNFGAEQISLAWGLEKELSHLKKWLLKAQTILADINTKKSHHH 60
Query: 61 SGRLWVKELQDIAYEADDLLNELVYEDLRRTAEQT----EVRDFISISPSKNPFLFRCEK 120
S LWV+EL DI YEADDLL+E+VYE +R+T EQT +VRD SISPSKN FLF +
Sbjct: 61 SVGLWVEELHDIIYEADDLLDEIVYEQIRQTVEQTGKLRKVRD--SISPSKNSFLFGLKM 120
Query: 121 AKKMKNTTQTLYKHYCEASALELVGDQSATETEVAPKQIRETTSNLDFEV 139
AKKMK T+TLY+HYCEAS L LVGD+S TE+E A QIRETTS LDFEV
Sbjct: 121 AKKMKKITKTLYEHYCEASPLGLVGDESTTESEAALNQIRETTSILDFEV 168
BLAST of IVF0021972 vs. ExPASy TrEMBL
Match:
A0A6J1CVR6 (putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC111014685 PE=4 SV=1)
HSP 1 Score: 159.1 bits (401), Expect = 1.4e-35
Identity = 95/170 (55.88%), Postives = 111/170 (65.29%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG----------------------------KKLHID 60
MAEFLWTFAVQEVL+KIVK AQQIG +KLH D
Sbjct: 1 MAEFLWTFAVQEVLRKIVKVAAQQIGLAWGLEKELSKLTKWLLKAETILGDINRRKLHHD 60
Query: 61 SGRLWVKELQDIAYEADDLLNELVYEDLRRTAE---QTEVRDFISISPSKNPFLFRCEKA 120
S RLW+++LQD+ +EA DLL+ELVYEDLRR E +VR SIS S N F FR + A
Sbjct: 61 SVRLWMEDLQDVVHEAHDLLDELVYEDLRRKVEIGKMNKVRG--SISRSYNLFSFRRKMA 120
Query: 121 KKMKNTTQTLYKHYCEASALELVGDQSATETEVAPKQIRETTSNLDFEVV 140
KKMK+ T+TLYKHYCEAS L LVGD+S ++ KQIRETTSNL+FEVV
Sbjct: 121 KKMKDVTETLYKHYCEASPLGLVGDESIETNQIVLKQIRETTSNLNFEVV 168
BLAST of IVF0021972 vs. ExPASy TrEMBL
Match:
A0A6J1CU86 (disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111014619 PE=4 SV=1)
HSP 1 Score: 153.7 bits (387), Expect = 5.7e-34
Identity = 92/170 (54.12%), Postives = 108/170 (63.53%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG----------------------------KKLHID 60
MAEFLWTFAVQEVL+KIVK AQQIG KK H D
Sbjct: 1 MAEFLWTFAVQEVLRKIVKVAAQQIGLARGLEKELSNLTKWLQKAETILRDINRKKSHSD 60
Query: 61 SGRLWVKELQDIAYEADDLLNELVYEDLRRTAE---QTEVRDFISISPSKNPFLFRCEKA 120
S RLWV++LQD+ +EADDLL+ELVYE LRR E +VRD S S S N FLFR + A
Sbjct: 61 SVRLWVEDLQDVVHEADDLLDELVYEHLRRKVEIGKINKVRD--SFSTSHNVFLFRLKMA 120
Query: 121 KKMKNTTQTLYKHYCEASALELVGDQSATETEVAPKQIRETTSNLDFEVV 140
KK+K+ TQ L+KHYCEAS L LVG +S ++ QIR+TTSNL+FEVV
Sbjct: 121 KKIKDITQILHKHYCEASPLGLVGQESTEANQIVLSQIRDTTSNLNFEVV 168
BLAST of IVF0021972 vs. NCBI nr
Match:
KAA0053848.1 (putative disease resistance protein RGA3 [Cucumis melo var. makuwa] >TYK25554.1 putative disease resistance protein RGA3 [Cucumis melo var. makuwa])
HSP 1 Score: 250 bits (638), Expect = 2.80e-83
Identity = 130/139 (93.53%), Postives = 130/139 (93.53%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIGKKLHIDSGRLWVKELQDIAYEADDLLNELVYEDL 60
MAEFLWTFAVQEVLKKIVKFGAQQIG LWVKELQDIAYEADDLLNELVYEDL
Sbjct: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG---------LWVKELQDIAYEADDLLNELVYEDL 60
Query: 61 RRTAEQTEVRDFISISPSKNPFLFRCEKAKKMKNTTQTLYKHYCEASALELVGDQSATET 120
RRTAEQTEVRDFISISPSKNPFLFRCEKAKKMKNTTQTLYKHYCEASALELVGDQSATET
Sbjct: 61 RRTAEQTEVRDFISISPSKNPFLFRCEKAKKMKNTTQTLYKHYCEASALELVGDQSATET 120
Query: 121 EVAPKQIRETTSNLDFEVV 139
EVAPKQIRETTSNLDFEVV
Sbjct: 121 EVAPKQIRETTSNLDFEVV 130
BLAST of IVF0021972 vs. NCBI nr
Match:
XP_038877687.1 (putative disease resistance protein RGA1 [Benincasa hispida] >XP_038877688.1 putative disease resistance protein RGA1 [Benincasa hispida])
HSP 1 Score: 185 bits (469), Expect = 2.76e-51
Identity = 110/170 (64.71%), Postives = 118/170 (69.41%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG----------------------------KKLHID 60
MAEFLWTFAVQEVLKKIVKFGA+QIG KKLHI
Sbjct: 1 MAEFLWTFAVQEVLKKIVKFGAEQIGLAWGLEKEVSQLRNWLLKAETILADINKKKLHIA 60
Query: 61 SGRLWVKELQDIAYEADDLLNELVYEDLRRTAEQT----EVRDFISISPSKNPFLFRCEK 120
S RLWV++LQDI YEADDLL+ELVYE LRR EQT EV D SIS SKNPFLFR +K
Sbjct: 61 SVRLWVEDLQDIVYEADDLLDELVYEHLRRAVEQTGKLREVCD--SISLSKNPFLFRRKK 120
Query: 121 AKKMKNTTQTLYKHYCEASALELVGDQSATETEVAPKQIRETTSNLDFEV 138
AK+MKN TQ LYKHYCEAS L LV D+SATETEV QIRETTS LDF+V
Sbjct: 121 AKQMKNITQALYKHYCEASPLGLVSDESATETEVTLAQIRETTSILDFKV 168
BLAST of IVF0021972 vs. NCBI nr
Match:
TYK25555.1 (putative disease resistance protein RGA3 [Cucumis melo var. makuwa])
HSP 1 Score: 173 bits (439), Expect = 5.77e-51
Identity = 102/172 (59.30%), Postives = 116/172 (67.44%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG----------------------------KKLHID 60
MAEFLWTFA+Q VLK IVK+GA+QIG K LH D
Sbjct: 1 MAEFLWTFAIQGVLKTIVKYGAEQIGAAWGLEKEASQLKKQLQSAAAILADINRKNLHHD 60
Query: 61 SGRLWVKELQDIAYEADDLLNELVYEDLRR-TAEQT----EVRDFISISPSKNPFLFRCE 120
S RLWV++LQ I YEADDLL+EL+YEDLRR T EQT +VRD ISISPS NPFLFRC+
Sbjct: 61 SVRLWVEDLQQIVYEADDLLDELIYEDLRRQTVEQTRKLRKVRDSISISPSTNPFLFRCK 120
Query: 121 KAKKMKNTTQTLYKHYCEASALELVGDQSAT-ETEVAPKQIRETTSNLDFEV 138
KAKK+KN TQ LYKHYC AS L LV ++S T TE A KQIRE TS L+F+V
Sbjct: 121 KAKKLKNITQALYKHYCAASPLGLVSNESNTIGTEAALKQIREATSMLNFQV 172
BLAST of IVF0021972 vs. NCBI nr
Match:
XP_038877689.1 (putative disease resistance protein RGA3 [Benincasa hispida])
HSP 1 Score: 181 bits (458), Expect = 1.35e-49
Identity = 106/171 (61.99%), Postives = 118/171 (69.01%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG----------------------------KKLHID 60
MAEFLWTFAVQE+LKKIVKFGA+QIG KKLH
Sbjct: 1 MAEFLWTFAVQEILKKIVKFGAEQIGVAWGLEKEEFQLKKWLLKAETILADINKKKLHHH 60
Query: 61 SGRLWVKELQDIAYEADDLLNELVYEDLRRTAEQT----EVRDFISISPSKNPFLFRCEK 120
+ RLWV++LQDI YEADDLL+EL YEDLRRT EQT +VRD SISPSKN FLFR +
Sbjct: 61 AVRLWVEDLQDIVYEADDLLDELRYEDLRRTGEQTGKFKKVRD--SISPSKNSFLFRLKM 120
Query: 121 AKKMKNTTQTLYKHYCEASALELVGDQSATETEVAPKQIRETTSNLDFEVV 139
A KMK T L+KHYCEAS L LVG++SATE EVA +QIRETTS LDFEVV
Sbjct: 121 ANKMKKITAALHKHYCEASPLGLVGEESATEIEVALQQIRETTSILDFEVV 169
BLAST of IVF0021972 vs. NCBI nr
Match:
XP_004140442.1 (disease resistance protein RGA2 [Cucumis sativus] >KGN50811.1 hypothetical protein Csa_018865 [Cucumis sativus])
HSP 1 Score: 169 bits (427), Expect = 2.02e-45
Identity = 100/170 (58.82%), Postives = 112/170 (65.88%), Query Frame = 0
Query: 1 MAEFLWTFAVQEVLKKIVKFGAQQIG----------------------------KKLHID 60
MAEFLWTFAVQEVLKKIV FGA+QI KK H
Sbjct: 1 MAEFLWTFAVQEVLKKIVNFGAEQISLAWGLEKELSHLKKWLLKAQTILADINTKKSHHH 60
Query: 61 SGRLWVKELQDIAYEADDLLNELVYEDLRRTAEQT----EVRDFISISPSKNPFLFRCEK 120
S LWV+EL DI YEADDLL+E+VYE +R+T EQT +VRD SISPSKN FLF +
Sbjct: 61 SVGLWVEELHDIIYEADDLLDEIVYEQIRQTVEQTGKLRKVRD--SISPSKNSFLFGLKM 120
Query: 121 AKKMKNTTQTLYKHYCEASALELVGDQSATETEVAPKQIRETTSNLDFEV 138
AKKMK T+TLY+HYCEAS L LVGD+S TE+E A QIRETTS LDFEV
Sbjct: 121 AKKMKKITKTLYEHYCEASPLGLVGDESTTESEAALNQIRETTSILDFEV 168
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UFH2 | 1.3e-62 | 93.53 | Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3DPY5 | 1.2e-39 | 59.30 | Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A0A0KST5 | 2.9e-38 | 58.82 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266890 PE=4 SV=1 | [more] |
A0A6J1CVR6 | 1.4e-35 | 55.88 | putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC11... | [more] |
A0A6J1CU86 | 5.7e-34 | 54.12 | disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
Match Name | E-value | Identity | Description | |
KAA0053848.1 | 2.80e-83 | 93.53 | putative disease resistance protein RGA3 [Cucumis melo var. makuwa] >TYK25554.1 ... | [more] |
XP_038877687.1 | 2.76e-51 | 64.71 | putative disease resistance protein RGA1 [Benincasa hispida] >XP_038877688.1 put... | [more] |
TYK25555.1 | 5.77e-51 | 59.30 | putative disease resistance protein RGA3 [Cucumis melo var. makuwa] | [more] |
XP_038877689.1 | 1.35e-49 | 61.99 | putative disease resistance protein RGA3 [Benincasa hispida] | [more] |
XP_004140442.1 | 2.02e-45 | 58.82 | disease resistance protein RGA2 [Cucumis sativus] >KGN50811.1 hypothetical prote... | [more] |
Match Name | E-value | Identity | Description | |