IVF0021879 (gene) Melon (IVF77) v1

Overview


Name	IVF0021879
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mic1 domain-containing protein
Location	chr04: 28814406 .. 28816593 (+)
RNA-Seq Expression	IVF0021879
Synteny	IVF0021879

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTGCCTGATTCGGTAAATCACCTGTCTTTTTCCATCGTTTTCTTATTTTTAGAAAAATCGGGGTCAATTCTCCCATCAATTTCTAGGATACATCCCCTAGAAGTCGGAATTTTGAGGAGTCAGATTATAGGTCACAATTTGAAATGTGGGTTGTTATCTCTTAGTGAAATTCTGCTTTGTTATACTGTGATATGAAGCTTTATTGATTATAAATGATTGCTTTCTATGTATATTGTACGTGAATTTTCGCAGTGCTATGGACCAGAAGGATAGAGCAACAGCTTCCTTGCTCAAGCGTGTTTAGTTTCTTGTGCGTCTCAGGTATGTGAAGGGATTGAAAGTGAAACATGGATACCGGAAGACTGGAATGTATTCTTCTTTTAAGTGTAATTCTATAAATTCAGTGAGATATGGTCATTGGATTGTCTTTTTTTTTTTTTGTTAGAATCATAACCTTGGTTGAGGATCGGGTTCTTGTTCCTTAGCCTATGCTTACCTAATTATGTTGATGAATTTGATTCCTACAAATAGAAGAGTAAAGCTAATTTTTACTGCAAAGAAATCAACAATGACACCCTCTCTTTGAAATTTCCGTTCATATTCCCAAAATTATATGCATTTCCTAAAATTTCCGTTTATTAGTTTGGTCTCTTTTGGATTGGAGTCTTTTCTTGAAGTTGAGGACTTCTTTTATGGTCGTGTTTTTTGTTTGCATTTGTTTCTCTCTTTTTTTCTCAATGAAAACTCTGGTTCTTGTAAAAGGGATTAGAAAAAAAAAAAAAAAAAAAAAAAAGAGTTGAAGAGTTTCATTGTGGAATTTTTTTTCAAAATAGCATCAACACTTGTGAGTCTATGACTGGGTTCCGAGACAGAGTTCCAGCTAAAGCCCTTTCCCTAGTTGATATACCTTGTAAAAGCCATTAGTTGAAGTTCTTTAGGCACATTATTTTGTAGTTGCATGAATTTTTATCAATAAGAAACTACACGTTCATTGAGAAACATGAAATAAATGAGAGAAAGAAGGCCATACTTAAAATAAAATAAATTAAACAGCTTGAGAAAGGGTGCTTCAATGACCAGCTATACTGAAAAAAATAGTTACAAATCTCTTTTACAGCTGAAGTTCAAAGAGACACTTCAAACCTCACTAGGATTTGGGATCAAAGCTCCTCACTAGATTTCTGTATCTCCTAAAGAACCTATTATTTAGCTCAATCCGAATGCATTTAAAGGATTTGTAAAGCAAGTAGCTCTACACAAGAACTGCACTTTATCTCTAAGGAACTTCATAAATGAAGGACGCAGAATTCCCTTGTTAGGGGCACTTTGTTTGGTTCCCTTGTTACAAGAGGACTTGTATTCTTGGCTCTTAAGTTGGTTTTATCAAAAAAGGAAAAAAAAGGGAAGTTGGTTTTAGTTTCCCCTCCTAAATATATCTGTTTCTTATATCAAAAAGTTACATTTCATGAACTTCACGTGTTGCTTAGTAGCTAACATACTGTATTGCAATCTGATGGTTCTCAACCAGTCAACCTTCATGCTTGCTGCTTCTATAAAGTCTTGTATTGTTTTGTTTGTTTTTTAACCCTCCATGTTCAGGGTAGCTTAAGGATAGCTTCACTGTCTCACCGATTTGTGAGACAATCTCTTAAATAGGTGGCTATCATTGTTCGAACCCACAACCTCTAAAGTACTTGGGTTTATAGTTTTGACTCTTTTGATTGCTTTGGCCAACCATTGTAGTTTGCTTCTAGAAAATATCAAGTTCCAATATCTGCAACATATGGTTGATACCATTTCGCGCCTTCGTGTTTATGGGACTGTTAAGAACTTTGAAAAAAATAATTTTTTATTGTTTGAATTGTGATTCAAATGATTTAGGAAAGTAAGAGAACATGGAACAGGGGCTGATACTTAATTTGTGTTATTTTCATGCATTATATGTACATATATACATCGTGGTTGGTTTTCCACAACCATTTATTATACATATGTGTGTGTATAGAGTATAATTTTAAAATCAATCAATCAATCAATTGTTTGTGTAGGCAAAACAATATGGGGGTTGTGTTGCGGCGAAGGTTCCAAAAGTTGAACGTGATATGTGTTTGAAAGAATTTATTGCACTAAAGTCTTGCATGCAAAATACGGTATCTATCAATAATTACAATTTATTTTTTAACTGA

mRNA sequence

TGCTGCCTGATTCGGTAAATCACCTGTCTTTTTCCATCGTTTTCTTATTTTTAGAAAAATCGGGGTCAATTCTCCCATCAATTTCTAGGATACATCCCCTAGAAGTCGGAATTTTGAGGAGTCAGATTATAGGTCACAATTTGAAATGTGGGTTGTTATCTCTTAGTGAAATTCTGCTTTGTTATACTGTGATATGAAGCTTTATTGATTATAAATGATTGCTTTCTATGTATATTGTACGTGAATTTTCGCAGTGCTATGGACCAGAAGGATAGAGCAACAGCTTCCTTGCTCAAGCGTGCAAAACAATATGGGGGTTGTGTTGCGGCGAAGGTTCCAAAAGTTGAACGTGATATGTGTTTGAAAGAATTTATTGCACTAAAGTCTTGCATGCAAAATACGGTATCTATCAATAATTACAATTTATTTTTTAACTGA

Coding sequence (CDS)

ATGGACCAGAAGGATAGAGCAACAGCTTCCTTGCTCAAGCGTGCAAAACAATATGGGGGTTGTGTTGCGGCGAAGGTTCCAAAAGTTGAACGTGATATGTGTTTGAAAGAATTTATTGCACTAAAGTCTTGCATGCAAAATACGGTATCTATCAATAATTACAATTTATTTTTTAACTGA

Protein sequence

MDQKDRATASLLKRAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVSINNYNLFFN

Homology

[Close]

BLAST of IVF0021879 vs. ExPASy TrEMBL
Match: A0A1S4DUQ7 (uncharacterized protein LOC107990619 OS=Cucumis melo OX=3656 GN=LOC107990619 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.6e-16
Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MDQKDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 50
          MDQKDRATASLLKR        AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT+
Sbjct: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTL 57

[Close]

BLAST of IVF0021879 vs. ExPASy TrEMBL
Match: A0A0A0LB85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G799640 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MDQKDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 50
          MD+KDRATASLLKR        AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT+
Sbjct: 34 MDRKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTL 90

[Close]

BLAST of IVF0021879 vs. ExPASy TrEMBL
Match: A0A7J6FE85 (Mic1 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_013335 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1   MDQKDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 50
           +D K+R T S LKR        AK+YG CVAAKVP+VERDMCLKEF+ALKSCMQN +
Sbjct: 52  VDMKERKTTSTLKRILVNCGAQAKEYGSCVAAKVPEVERDMCLKEFLALKSCMQNVI 108

[Close]

BLAST of IVF0021879 vs. ExPASy TrEMBL
Match: A0A7J6FJ60 (Mic1 domain-containing protein (Fragment) OS=Cannabis sativa OX=3483 GN=F8388_025046 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1   MDQKDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 50
           +D K+R T S LKR        AK+YG CVAAKVP+VERDMCLKEF+ALKSCMQN +
Sbjct: 55  VDMKERKTTSTLKRILVKCGAQAKEYGSCVAAKVPEVERDMCLKEFLALKSCMQNVI 111

[Close]

BLAST of IVF0021879 vs. ExPASy TrEMBL
Match: A0A7J6I4B1 (Mic1 domain-containing protein (Fragment) OS=Cannabis sativa OX=3483 GN=G4B88_012227 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1   MDQKDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 50
           +D K+R T S LKR        AK+YG CVAAKVP+VERDMCLKEF+ALKSCMQN +
Sbjct: 53  VDMKERKTTSTLKRILVNCGAQAKEYGSCVAAKVPEVERDMCLKEFLALKSCMQNVI 109

[Close]

BLAST of IVF0021879 vs. NCBI nr
Match: XP_016899714.1 (PREDICTED: uncharacterized protein LOC107990619 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 4.36e-23
Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MDQKDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 49
          MDQKDRATASLLKR        AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT+
Sbjct: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTL 57

[Close]

BLAST of IVF0021879 vs. NCBI nr
Match: KAG6580793.1 (hypothetical protein SDJN03_20795, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.6 bits (218), Expect = 1.99e-20
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   MDQKDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 49
           MD+KD+ATASLLKR        AKQYGGCVA+KVPKVERDMCLKEFIALKSCMQNT+
Sbjct: 98  MDRKDKATASLLKRVLVTCASQAKQYGGCVASKVPKVERDMCLKEFIALKSCMQNTL 154

[Close]

BLAST of IVF0021879 vs. NCBI nr
Match: KAE8651130.1 (hypothetical protein Csa_002376 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.62e-19
Identity = 47/56 (83.93%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MDQKDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT 48
          MD+KDRATASLLKR        AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT
Sbjct: 7  MDRKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT 62

[Close]

BLAST of IVF0021879 vs. NCBI nr
Match: ONH95644.1 (hypothetical protein PRUPE_7G082600 [Prunus persica])

HSP 1 Score: 75.5 bits (184), Expect = 2.20e-16
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 4  KDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVSINN 53
          K+R + S LKR        AK+YGGCVAAKVP+VERDMCLKEF+ALKSCMQN V  +N
Sbjct: 2  KERNSTSTLKRILVTCAAQAKEYGGCVAAKVPQVERDMCLKEFLALKSCMQNVVRFHN 59

[Close]

BLAST of IVF0021879 vs. NCBI nr
Match: TQD99061.1 (hypothetical protein C1H46_015328 [Malus baccata])

HSP 1 Score: 74.7 bits (182), Expect = 4.45e-16
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 4  KDRATASLLKR--------AKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVS 50
          K+R + S LKR        AK+YGGCVAAKVP+VERDMCLKEF+ALKSCMQN VS
Sbjct: 2  KERNSTSTLKRILVTCAAQAKEYGGCVAAKVPQVERDMCLKEFLALKSCMQNVVS 56

[Close]

BLAST of IVF0021879 vs. TAIR 10
Match: AT3G12012.1 (conserved peptide upstream open reading frame 20 )

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-11
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1  MDQKDRATASLL--------KRAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 50
          M +K+  TAS L        K+AK YG CVA+KV +VERD+CLKEF+ALKSCMQ+T+
Sbjct: 1  MKEKNSTTASTLGRILATCSKQAKDYGSCVASKVHEVERDICLKEFLALKSCMQHTI 57

The following BLAST results are available for this feature:

BLAST of IVF0021879 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021879 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUQ7	6.6e-16	84.21	uncharacterized protein LOC107990619 OS=Cucumis melo OX=3656 GN=LOC107990619 PE=...	[more]
A0A0A0LB85	1.9e-15	82.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G799640 PE=4 SV=1	[more]
A0A7J6FE85	1.1e-10	64.91	Mic1 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_013335 PE=4 S...	[more]
A0A7J6FJ60	1.1e-10	64.91	Mic1 domain-containing protein (Fragment) OS=Cannabis sativa OX=3483 GN=F8388_02...	[more]
A0A7J6I4B1	1.1e-10	64.91	Mic1 domain-containing protein (Fragment) OS=Cannabis sativa OX=3483 GN=G4B88_01...	[more]

BLAST of IVF0021879 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899714.1	4.36e-23	84.21	PREDICTED: uncharacterized protein LOC107990619 [Cucumis melo]	[more]
KAG6580793.1	1.99e-20	78.95	hypothetical protein SDJN03_20795, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8651130.1	2.62e-19	83.93	hypothetical protein Csa_002376 [Cucumis sativus]	[more]
ONH95644.1	2.20e-16	65.52	hypothetical protein PRUPE_7G082600 [Prunus persica]	[more]
TQD99061.1	4.45e-16	69.09	hypothetical protein C1H46_015328 [Malus baccata]	[more]

BLAST of IVF0021879 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12012.1	1.7e-11	57.89	conserved peptide upstream open reading frame 20	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034595	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 8	PANTHER	PTHR34561	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 8	coord: 13..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021879.2	IVF0021879.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0005739	mitochondrion