IVF0021074 (gene) Melon (IVF77) v1

Overview


Name	IVF0021074
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr11: 18149351 .. 18149780 (-)
RNA-Seq Expression	IVF0021074
Synteny	IVF0021074

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCGGCTCACGGCTGGAGGTAGGCATGGCTCGACTGATGGATGCAGGCACGACTCGGTGCGGTCTTGCGTACACGGACGGCTTGGCTGATGGATGCGGGCACGGATGCAGCTGTTCAGGTCGGGTGCACGTGCGGCTCGGGCTTTAGCGATCTCTGACGGACGACGGCAGACGAAGCGGCAGTGCTTTAGGCGACGACGAAATGGCTCGCGTTGAAGGAAATCTAACGAAGAGGCGTGACGACAGGTGTGGCTTGGGTAATGAAACCGGACGACGAATGAAGGGGATCGACGACAGCGAACGACTAGGGCTACGACGGGGCAGAAACGGACGATGGAAAGCTTGGCTACCTACGACGGTCCTGTTGCTCGGCGGAAGGGTGAGCGGAGAAGACCGACCGCGATGTTCGGTGGCTGAAGGCGAATAG

mRNA sequence

ATGGCGCGGCTCACGGCTGGAGGTAGGCATGGCTCGACTGATGGATGCAGGCACGACTCGCGATCTCTGACGGACGACGGCAGACGAAGCGGCAGTGCTTTAGGCGACGACGAAATGGCTCGCGTTGAAGGAAATCTAACGAAGAGGCGTGACGACAGGTGTGGCTTGGGTAATGAAACCGGACGACGAATGAAGGGGATCGACGACAGCGAACGACTAGGGCTACGACGGGGCAGAAACGGACGATGGAAAGCTTGGCTACCTACGACGGTCCTGTTGCTCGGCGGAAGGGTGAGCGGAGAAGACCGACCGCGATGTTCGGTGGCTGAAGGCGAATAG

Coding sequence (CDS)

ATGGCGCGGCTCACGGCTGGAGGTAGGCATGGCTCGACTGATGGATGCAGGCACGACTCGCGATCTCTGACGGACGACGGCAGACGAAGCGGCAGTGCTTTAGGCGACGACGAAATGGCTCGCGTTGAAGGAAATCTAACGAAGAGGCGTGACGACAGGTGTGGCTTGGGTAATGAAACCGGACGACGAATGAAGGGGATCGACGACAGCGAACGACTAGGGCTACGACGGGGCAGAAACGGACGATGGAAAGCTTGGCTACCTACGACGGTCCTGTTGCTCGGCGGAAGGGTGAGCGGAGAAGACCGACCGCGATGTTCGGTGGCTGAAGGCGAATAG

Protein sequence

MARLTAGGRHGSTDGCRHDSRSLTDDGRRSGSALGDDEMARVEGNLTKRRDDRCGLGNETGRRMKGIDDSERLGLRRGRNGRWKAWLPTTVLLLGGRVSGEDRPRCSVAEGE

Homology

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BLAST of IVF0021074 vs. NCBI nr
Match: KAA0034015.1 (hypothetical protein E6C27_scaffold400G00840 [Cucumis melo var. makuwa] >TYK02812.1 hypothetical protein E5676_scaffold1418G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 9.78e-05
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 21  RSLTDDGRRSGSALGDDEMARVEGNLTKRRDDRCGLGN 58
           RS T+D RRSGSALGDDE AR EGN  KRRDD  GLG+
Sbjct: 121 RSSTNDDRRSGSALGDDETARDEGNPMKRRDDWRGLGS 158

The following BLAST results are available for this feature:

BLAST of IVF0021074 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021074 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021074 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034015.1	9.78e-05	73.68	hypothetical protein E6C27_scaffold400G00840 [Cucumis melo var. makuwa] >TYK0281...	[more]

BLAST of IVF0021074 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021074.1	IVF0021074.1	mRNA