IVF0020924 (gene) Melon (IVF77) v1

Overview


Name	IVF0020924
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr10: 14658355 .. 14658633 (-)
RNA-Seq Expression	IVF0020924
Synteny	IVF0020924

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCATTAAAGATTATGATTGCACTATCGCATACTACCCTAGGAAAGTCAATGTCATAGCTGACGCATTAAGTAGAAAAAGCCTCAGCCCAAGGAACAAAGGGAGGATGGCTCTATTAAAAAAGCTAAGAGGCTTCAAAGTGGTACTAAATGCAGGAACATTTGGAAACCCGATGGCACGTTTTCAGGTGAAGCCCACGCTTGAAGAGGAAATTGTTAGATTGCAACCTGAAGACCCTGAGCTGAGGAAGATAGCCGAAAAAAGAGAGATGTGA

mRNA sequence

ATGAAGCTCATTAAAGATTATGATTGCACTATCGCATACTACCCTAGGAAAGTCAATGTCATAGCTGACGCATTAAGTAGAAAAAGCCTCAGCCCAAGGAACAAAGGGAGGATGGCTCTATTAAAAAAGCTAAGAGGCTTCAAAGTGGTACTAAATGCAGGAACATTTGGAAACCCGATGGCACGTTTTCAGGTGAAGCCCACGCTTGAAGAGGAAATTGTTAGATTGCAACCTGAAGACCCTGAGCTGAGGAAGATAGCCGAAAAAAGAGAGATGTGA

Coding sequence (CDS)

ATGAAGCTCATTAAAGATTATGATTGCACTATCGCATACTACCCTAGGAAAGTCAATGTCATAGCTGACGCATTAAGTAGAAAAAGCCTCAGCCCAAGGAACAAAGGGAGGATGGCTCTATTAAAAAAGCTAAGAGGCTTCAAAGTGGTACTAAATGCAGGAACATTTGGAAACCCGATGGCACGTTTTCAGGTGAAGCCCACGCTTGAAGAGGAAATTGTTAGATTGCAACCTGAAGACCCTGAGCTGAGGAAGATAGCCGAAAAAAGAGAGATGTGA

Protein sequence

MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPMARFQVKPTLEEEIVRLQPEDPELRKIAEKREM

Homology

[Close]

BLAST of IVF0020924 vs. ExPASy TrEMBL
Match: A0A5A7VIK8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
          MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60

Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM 93
          ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM
Sbjct: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM 92

[Close]

BLAST of IVF0020924 vs. ExPASy TrEMBL
Match: A0A5D3DMM3 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001300 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-20
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1   MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
           M+LIKDYDCTI Y+  K NV ADALSRKS S  NKG++ALL +LR  K +LNA   GN +
Sbjct: 40  MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99

Query: 61  ARFQVKPTLEEEIVRLQPEDPELRKIAEK 90
           ARFQ K TLE+EI + QPEDP LRK+ E+
Sbjct: 100 ARFQDKTTLEDEIFKSQPEDPVLRKLTEE 128

[Close]

BLAST of IVF0020924 vs. ExPASy TrEMBL
Match: A0A5A7SZR3 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001060 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.3e-20
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
          MKLIKDY  TIAY+ +K NV+AD  SRKSL+  N+G +ALL++LRGFK +LNAG   N M
Sbjct: 1  MKLIKDYGYTIAYHSKKANVVADTSSRKSLNTTNRGSLALLRELRGFKGILNAGKSKNLM 60

Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEK 90
          AR QVK T EEEIVR Q +DPE RK+AE+
Sbjct: 61 ARSQVKLTHEEEIVRSQLKDPEFRKMAEE 89

[Close]

BLAST of IVF0020924 vs. ExPASy TrEMBL
Match: A0A5A7SUU4 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1   MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
           M+LIKD+DCTI Y+  K NV+AD LSRKS    + GR+ALL++LR +K  +++G+ G+ +
Sbjct: 15  MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVGSFV 74

Query: 61  ARFQVKPTLEEEIVRLQPEDPELRKIAEK 90
           ARFQVKP +EEEIVR Q EDP LR++ E+
Sbjct: 75  ARFQVKPIIEEEIVRTQFEDPTLRRLIEE 103

[Close]

BLAST of IVF0020924 vs. ExPASy TrEMBL
Match: A0A5A7UWA6 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001920 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-18
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
          MKLIKDYDCTI Y+  K N+IADALS K  SPRN+GRMALL++L+GFK +L A T GN M
Sbjct: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60

Query: 61 ARFQVKPTL 70
          ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69

[Close]

BLAST of IVF0020924 vs. NCBI nr
Match: KAA0067194.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (455), Expect = 9.81e-57
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
          MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60

Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM 92
          ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM
Sbjct: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM 92

[Close]

BLAST of IVF0020924 vs. NCBI nr
Match: KAA0036590.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 9.85e-27
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
          MKLIKDY  TIAY+ +K NV+AD  SRKSL+  N+G +ALL++LRGFK +LNAG   N M
Sbjct: 1  MKLIKDYGYTIAYHSKKANVVADTSSRKSLNTTNRGSLALLRELRGFKGILNAGKSKNLM 60

Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAE 88
          AR QVK T EEEIVR Q +DPE RK+AE
Sbjct: 61 ARSQVKLTHEEEIVRSQLKDPEFRKMAE 88

[Close]

BLAST of IVF0020924 vs. NCBI nr
Match: KAA0059914.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 2.52e-26
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1   MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
           M+LIKDYDCTI Y+  K NV ADALSRKS S  NKG++ALL +LR  K +LNA   GN +
Sbjct: 40  MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99

Query: 61  ARFQVKPTLEEEIVRLQPEDPELRKIAE 88
           ARFQ K TLE+EI + QPEDP LRK+ E
Sbjct: 100 ARFQDKTTLEDEIFKSQPEDPVLRKLTE 127

[Close]

BLAST of IVF0020924 vs. NCBI nr
Match: KAA0058456.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 1.32e-25
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
          MKLIKDYDCTI Y+  K N+IADALS K  SPRN+GRMALL++L+GFK +L A T GN M
Sbjct: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60

Query: 61 ARFQVKPTL 69
          ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69

[Close]

BLAST of IVF0020924 vs. NCBI nr
Match: KAA0035002.1 (polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (250), Expect = 1.49e-23
Identity = 50/88 (56.82%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1   MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
           M+LIKD+DCTI Y+  K NV+AD LSRKS    + GR+ALL++LR +K  +++G+ G+ +
Sbjct: 15  MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVGSFV 74

Query: 61  ARFQVKPTLEEEIVRLQPEDPELRKIAE 88
           ARFQVKP +EEEIVR Q EDP LR++ E
Sbjct: 75  ARFQVKPIIEEEIVRTQFEDPTLRRLIE 102

The following BLAST results are available for this feature:

BLAST of IVF0020924 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020924 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIK8	1.7e-42	100.00	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE...	[more]
A0A5D3DMM3	4.1e-20	62.92	CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G...	[more]
A0A5A7SZR3	5.3e-20	64.04	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001060 P...	[more]
A0A5A7SUU4	1.0e-18	56.18	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE...	[more]
A0A5A7UWA6	2.9e-18	72.46	CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G...	[more]

BLAST of IVF0020924 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067194.1	9.81e-57	100.00	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036590.1	9.85e-27	64.77	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0059914.1	2.52e-26	63.64	CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [...	[more]
KAA0058456.1	1.32e-25	72.46	CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [...	[more]
KAA0035002.1	1.49e-23	56.82	polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var...	[more]

BLAST of IVF0020924 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020924.1	IVF0020924.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding