IVF0020763 (gene) Melon (IVF77) v1

Overview


Name	IVF0020763
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PGG domain-containing protein
Location	chr03: 21662676 .. 21663604 (+)
RNA-Seq Expression	IVF0020763
Synteny	IVF0020763

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGAGTGGTGCCTACATGCATATGTACTGTCTTGTGGCTGCTACGAGGAGATAGTTCTCGGCATCTTCCCATTGCAAACGAAAAAGTACATATCAACAACCTCAACTTGGACTTCATTACTTCACCAAAATCATAAAGCTAGCCACGGCCCTATAAATATAAGTATATGAGAAGGGGGTTTTATAAATTGTAATTCATATAAGAAGTTTGGATATATGTTTAATTAAAGGTCTTCAAAGTTTTCATAATGTCAAAAGCAGGGGCAAAGAATGAAGAGGCAACAGTAGTAGCTATAGATACTGAAACTGAAAACAGAAAGGATGGAGAAGAGATGAACAGTGGTTGGATGAGACCAGGAGATGTTGATTTTGTAATGGTAAGCCCTTCGATTTCTCTGCTCTTTTTGTTTAATTTCTCCTCTGGCCTCTATCCGTTATGAGTGGTTGGATGGAACTTTCATTTGCTTTTCCTCACCTTATTATTTGTCAATTTCACGACAGATTGTCGTAACATTCATTGCAGCCGTGGCATTCCAAGTAGGAACAAACCCACCGGGCAGTGTATGGCAAGAGGACAAGAATGGCTTTACTGCAGGTAAATCAATAATGGCGTCAAAATCACCTTCTGAGTACAAAAATTCATGGCGGGAGTGACATTATGTCTTTCATTTTCGTTGATCCAGTTAAGTGTGATGTTATTCAGATGGTACCTCAAAACTTATTCAGTTAGGAGAATGATTATGTATCTACTGATGATATGTACAATAGCGCCAATGATTTTTTCCTTTTGGGCCTCTGTTAAAGCTTTGACACCTGATGAAAAAATAATGTCTGAGATCACTGCTACCATATGGTCTAGTTTCGGAGTCTATCTTATGAGCCTTCCATTAATTCTACTTTACTACCTACTCAAGAAATTCTTGTGA

mRNA sequence

ATGTGTGAGTGGTGCCTACATGCATATGTACTGTCTTGTGGCTGCTACGAGGAGATAGTTCTCGGCATCTTCCCATTGCAAACGAAAAAGTACATATCAACAACCTCAACTTGGACTTCATTACTTCACCAAAATCATAAAGCTAGCCACGGCCCTATAAATATAAGGGCAAAGAATGAAGAGGCAACAGTAGTAGCTATAGATACTGAAACTGAAAACAGAAAGGATGGAGAAGAGATGAACAGTGGTTGGATGAGACCAGGAGATGTTGATTTTGTAATGATTGTCGTAACATTCATTGCAGCCGTGGCATTCCAAGTAGGAACAAACCCACCGGGCAGTGTATGGCAAGAGGACAAGAATGGCTTTACTGCAGTACAAAAATTCATGGCGGGAGTGACATTATGTCTTTCATTTTCGTTGATCCAGTTAAGTGTGATGTTATTCAGATGGTACCTCAAAACTTATTCAGTTAGGAGAATGATTATGTATCTACTGATGATATGTACAATAGCGCCAATGATTTTTTCCTTTTGGGCCTCTGTTAAAGCTTTGACACCTGATGAAAAAATAATGTCTGAGATCACTGCTACCATATGGTCTAGTTTCGGAGTCTATCTTATGAGCCTTCCATTAATTCTACTTTACTACCTACTCAAGAAATTCTTGTGA

Coding sequence (CDS)

ATGTGTGAGTGGTGCCTACATGCATATGTACTGTCTTGTGGCTGCTACGAGGAGATAGTTCTCGGCATCTTCCCATTGCAAACGAAAAAGTACATATCAACAACCTCAACTTGGACTTCATTACTTCACCAAAATCATAAAGCTAGCCACGGCCCTATAAATATAAGGGCAAAGAATGAAGAGGCAACAGTAGTAGCTATAGATACTGAAACTGAAAACAGAAAGGATGGAGAAGAGATGAACAGTGGTTGGATGAGACCAGGAGATGTTGATTTTGTAATGATTGTCGTAACATTCATTGCAGCCGTGGCATTCCAAGTAGGAACAAACCCACCGGGCAGTGTATGGCAAGAGGACAAGAATGGCTTTACTGCAGTACAAAAATTCATGGCGGGAGTGACATTATGTCTTTCATTTTCGTTGATCCAGTTAAGTGTGATGTTATTCAGATGGTACCTCAAAACTTATTCAGTTAGGAGAATGATTATGTATCTACTGATGATATGTACAATAGCGCCAATGATTTTTTCCTTTTGGGCCTCTGTTAAAGCTTTGACACCTGATGAAAAAATAATGTCTGAGATCACTGCTACCATATGGTCTAGTTTCGGAGTCTATCTTATGAGCCTTCCATTAATTCTACTTTACTACCTACTCAAGAAATTCTTGTGA

Protein sequence

MCEWCLHAYVLSCGCYEEIVLGIFPLQTKKYISTTSTWTSLLHQNHKASHGPINIRAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVWQEDKNGFTAVQKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL

Homology

[Close]

BLAST of IVF0020763 vs. ExPASy TrEMBL
Match: A0A1S3BCY4 (uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.6e-81
Identity = 165/179 (92.18%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 57  AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 116
           AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW
Sbjct: 6   AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 65

Query: 117 QEDKNGFTA------------VQKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMY 176
           QEDKNGFTA             +KFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMY
Sbjct: 66  QEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMY 125

Query: 177 LLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL 224
           LLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL
Sbjct: 126 LLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL 184

[Close]

BLAST of IVF0020763 vs. ExPASy TrEMBL
Match: A0A0A0KIL3 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.6e-70
Identity = 143/179 (79.89%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 57  AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 116
           AKNEEATVV+IDT +EN+KD EE NSGWM+PGDVDFVM+VVTFIAAVAFQVG NPPGSVW
Sbjct: 6   AKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPPGSVW 65

Query: 117 QEDKNGFTA------------VQKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMY 176
           QEDKNGFTA             +KFMAGVTLCL FSLIQL VMLFRWYLK+YSVRRMIMY
Sbjct: 66  QEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRRMIMY 125

Query: 177 LLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL 224
           +LM+CTIAPMI SFWASVKALTPDEK+MSEITATIWS  GVYL+SLP+ILLYYL+K FL
Sbjct: 126 ILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLVKTFL 184

[Close]

BLAST of IVF0020763 vs. ExPASy TrEMBL
Match: A0A5A7VCJ4 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00270 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 57  AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 116
           AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW
Sbjct: 6   AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 65

Query: 117 QEDKNGFTA 126
           QEDKNGFTA
Sbjct: 66  QEDKNGFTA 74

[Close]

BLAST of IVF0020763 vs. ExPASy TrEMBL
Match: A0A1S4DVA8 (uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 64/183 (34.97%), Postives = 106/183 (57.92%), Query Frame = 0


Query: 58  KNEEATVVAIDT-ETENRKDGEEMNSGWMRPG---DVDFVMIVVTFIAAVAFQVGTNPPG 117
           K E+ +V++I+T +T N KD E       + G   D DF+M+  TFIAA+AFQ GTNPPG
Sbjct: 4   KVEDESVLSIETDQTINEKDKENQKKKKKKEGEGRDRDFLMVATTFIAAMAFQAGTNPPG 63

Query: 118 SVWQEDKNGFTAVQK-------------FMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRR 177
            VWQ+D +      K             FM+GVT+C + S +Q  V+L +   K++SV +
Sbjct: 64  GVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACSAMQFIVLLGKSSEKSWSVSK 123

Query: 178 MIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLK 224
             +Y  M   I+ ++ ++W+++KALTP+ + MS +   + ++  + ++ LP+ +  Y+ K
Sbjct: 124 SFIYFTMGSGISAIVVAYWSAIKALTPEAQ-MSHVIVMLKTTLVLSVVVLPISM--YIEK 183

[Close]

BLAST of IVF0020763 vs. ExPASy TrEMBL
Match: A0A0A0KGU1 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363530 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.3e-15
Identity = 66/178 (37.08%), Postives = 96/178 (53.93%), Query Frame = 0


Query: 61  EATVVAIDT--ETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVWQE 120
           E+  + IDT  +T + K+    N+ WMR  D DF+M+V TFIA VAFQ+GTNPPG VWQE
Sbjct: 10  ESVAITIDTTDDTGHEKNKMMNNNNWMRE-DTDFLMVVTTFIATVAFQIGTNPPGGVWQE 69

Query: 121 -DKNGFTAVQK-------------FMAGVTLCLSFSLIQLSVM-LFRWYL--KTYSVRRM 180
            DK G     K             F+  +T C  FS +Q +V+ L +W +  K +S  R 
Sbjct: 70  DDKQGKYFAGKSIMATKSPSDFIGFLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFSRF 129

Query: 181 IMYLLMICTIAPMIFSFWASVKALTPD--EKIMSEITATIWSSFGVYLMSLPLILLYY 218
           I+Y  M   ++ M F++  SV+A TPD  E  +  I+      F + L ++ + L Y+
Sbjct: 130 ILYSTMGLAVSSMGFAYGCSVRAYTPDSEENTLFVISFITMLGFPISLAAISIYLQYF 186

[Close]

BLAST of IVF0020763 vs. NCBI nr
Match: XP_008445521.1 (PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo])

HSP 1 Score: 309 bits (791), Expect = 2.43e-104
Identity = 165/179 (92.18%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 57  AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 116
           AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW
Sbjct: 6   AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 65

Query: 117 QEDKNGFTA------------VQKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMY 176
           QEDKNGFTA             +KFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMY
Sbjct: 66  QEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMY 125

Query: 177 LLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL 223
           LLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL
Sbjct: 126 LLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL 184

[Close]

BLAST of IVF0020763 vs. NCBI nr
Match: XP_004144204.1 (uncharacterized protein LOC101208403 [Cucumis sativus])

HSP 1 Score: 273 bits (698), Expect = 3.48e-90
Identity = 143/179 (79.89%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 57  AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 116
           AKNEEATVV+IDT +EN+KD EE NSGWM+PGDVDFVM+VVTFIAAVAFQVG NPPGSVW
Sbjct: 6   AKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPPGSVW 65

Query: 117 QEDKNGFTA------------VQKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMY 176
           QEDKNGFTA             +KFMAGVTLCL FSLIQL VMLFRWYLK+YSVRRMIMY
Sbjct: 66  QEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRRMIMY 125

Query: 177 LLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL 223
           +LM+CTIAPMI SFWASVKALTPDEK+MSEITATIWS  GVYL+SLP+ILLYYL+K FL
Sbjct: 126 ILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLVKTFL 184

[Close]

BLAST of IVF0020763 vs. NCBI nr
Match: KAE8647228.1 (hypothetical protein Csa_018955 [Cucumis sativus])

HSP 1 Score: 273 bits (698), Expect = 1.51e-87
Identity = 143/179 (79.89%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 57  AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 116
           AKNEEATVV+IDT +EN+KD EE NSGWM+PGDVDFVM+VVTFIAAVAFQVG NPPGSVW
Sbjct: 192 AKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPPGSVW 251

Query: 117 QEDKNGFTA------------VQKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRMIMY 176
           QEDKNGFTA             +KFMAGVTLCL FSLIQL VMLFRWYLK+YSVRRMIMY
Sbjct: 252 QEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRRMIMY 311

Query: 177 LLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKKFL 223
           +LM+CTIAPMI SFWASVKALTPDEK+MSEITATIWS  GVYL+SLP+ILLYYL+K FL
Sbjct: 312 ILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLVKTFL 370

[Close]

BLAST of IVF0020763 vs. NCBI nr
Match: XP_038884181.1 (uncharacterized protein LOC120075089 [Benincasa hispida])

HSP 1 Score: 189 bits (479), Expect = 6.95e-57
Identity = 105/180 (58.33%), Postives = 130/180 (72.22%), Query Frame = 0


Query: 58  KNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVWQ 117
           K+EEAT V+IDTE E+RKD EE N GW+   DVDFVM++VTFIA VAFQ GTNPPG VWQ
Sbjct: 8   KDEEATAVSIDTERESRKDREEANQGWIER-DVDFVMVIVTFIATVAFQAGTNPPGGVWQ 67

Query: 118 EDK--NGFTAVQ--------------KFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVRRM 177
           EDK  NG   +               KFM GVT+CL+FS+IQL VMLF WYLK++S+RR 
Sbjct: 68  EDKKVNGTDYIAGKSIMGTKSPSEYIKFMVGVTVCLAFSVIQLIVMLFNWYLKSWSIRRA 127

Query: 178 IMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLLKK 221
           I+Y+LM+ TI PM+ +FW+S+ ALTP + +M+EI A  WS  GV L+ LP +LLYYL KK
Sbjct: 128 ILYMLMLLTITPMVVAFWSSLLALTPAD-LMTEIKAGFWSVIGVSLIVLPFVLLYYLTKK 185

[Close]

BLAST of IVF0020763 vs. NCBI nr
Match: KAA0064717.1 (ankyrin repeat-containing protein [Cucumis melo var. makuwa] >TYK00737.1 ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 2.09e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 57  AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 116
           AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW
Sbjct: 6   AKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNPPGSVW 65

Query: 117 QEDKNGFTA 125
           QEDKNGFTA
Sbjct: 66  QEDKNGFTA 74

The following BLAST results are available for this feature:

BLAST of IVF0020763 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020763 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BCY4	2.6e-81	92.18	uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=...	[more]
A0A0A0KIL3	1.6e-70	79.89	PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV...	[more]
A0A5A7VCJ4	5.6e-31	100.00	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4DVA8	1.9e-15	34.97	uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=...	[more]
A0A0A0KGU1	7.3e-15	37.08	PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363530 PE=4 SV...	[more]

BLAST of IVF0020763 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445521.1	2.43e-104	92.18	PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo]	[more]
XP_004144204.1	3.48e-90	79.89	uncharacterized protein LOC101208403 [Cucumis sativus]	[more]
KAE8647228.1	1.51e-87	79.89	hypothetical protein Csa_018955 [Cucumis sativus]	[more]
XP_038884181.1	6.95e-57	58.33	uncharacterized protein LOC120075089 [Benincasa hispida]	[more]
KAA0064717.1	2.09e-40	100.00	ankyrin repeat-containing protein [Cucumis melo var. makuwa] >TYK00737.1 ankyrin...	[more]

BLAST of IVF0020763 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026961	PGG domain	PFAM	PF13962	PGG	coord: 91..182 e-value: 2.1E-8 score: 34.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020763.1	IVF0020763.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane