IVF0020558 (gene) Melon (IVF77) v1

Overview


Name	IVF0020558
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ALBINO3-like protein 2, chloroplastic
Location	chr05: 13240955 .. 13241895 (-)
RNA-Seq Expression	IVF0020558
Synteny	IVF0020558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACGTCGAAGCTCTGTACTCACCTTCGCCGTCTTCGTCCGTCTCGTTTTTACTCCATCTCTTTCCTTTCTTGTCCTCTGCCCTTTCGACTTCACGAAGCTCACACACTCTCAAGCTCACACCATCAACCATTCACCACTCCCTCCCATCGTTTTGATCCTCATATAAGTTCCGTTAGTGCTCTCACCGCATTCTCCTCTCGGTACTTCTGGACTCGTTCAAACGATGATTCAGAGTTCGAACAAAGTGTTGAATCAAGACACCTCTCGAACGACGATACGGGAATCCTCCAGTCGGGAATTCAAGACTTGGAACTTGGAGGAGTTGTTGAAGAAGTCATTGGTACGACTACGGTGGAGGATTCAATTTTACCCATTCAGCAACTTACTTCGATTCTGGATGGTTTCCATCAGTATACCGGTATGCCCTGGTGAGCATTTCAATACTTCTCATATGATTCTGGAGGAATATTTAGAAGAGTGTACGGAGCGTATGGATTTTGATCTTTTCTATTTCCATTTTGAACATCTTGAATCGTGTTTTGGTCATAGTGTCTTTCTTTTATTTGATATCGGTATATGTCATGGCCTATTTAACGAGCTCTGTCTTTGATTGTCGAGTAGTTTTCTGTTACTTTCCTCAAGCTCTTCTATATAAGAGAGTTTCTATAGCCGCATTGTATTGTCATGGATAACAATAAAATACTCATCCCATTACATTGTTATACTCCGCGTGTGTACTTGAGTTAGATGCACAAAATTTTAATGTTTTCGTTGTCTAACAGTTGGGTCTTTTTGGGGTGAGGAAAGATTGTGGACGGTGGTTTCTAGTAAGATTGACAGCTTCGATTTTGGTTCTCTTGGAAATATTAAAATTTTAATTTACTTCGCTGATCCTTTTGATTTCAGGTGGGCAGTTATTGCTTCATCAACTTTAG

mRNA sequence

ATGGCAACGTCGAAGCTCTGTACTCACCTTCGCCGTCTTCGTCCGTCTCGTTTTTACTCCATCTCTTTCCTTTCTTGTCCTCTGCCCTTTCGACTTCACGAAGCTCACACACTCTCAAGCTCACACCATCAACCATTCACCACTCCCTCCCATCGTTTTGATCCTCATATAAGTTCCGTTAGTGCTCTCACCGCATTCTCCTCTCGGTACTTCTGGACTCGTTCAAACGATGATTCAGAGTTCGAACAAAGTGTTGAATCAAGACACCTCTCGAACGACGATACGGGAATCCTCCAGTCGGGAATTCAAGACTTGGAACTTGGAGGAGTTGTTGAAGAAGTCATTGGTACGACTACGGTGGAGGATTCAATTTTACCCATTCAGCAACTTACTTCGATTCTGGATGGTTTCCATCAGTATACCGGTGGGCAGTTATTGCTTCATCAACTTTAG

Coding sequence (CDS)

ATGGCAACGTCGAAGCTCTGTACTCACCTTCGCCGTCTTCGTCCGTCTCGTTTTTACTCCATCTCTTTCCTTTCTTGTCCTCTGCCCTTTCGACTTCACGAAGCTCACACACTCTCAAGCTCACACCATCAACCATTCACCACTCCCTCCCATCGTTTTGATCCTCATATAAGTTCCGTTAGTGCTCTCACCGCATTCTCCTCTCGGTACTTCTGGACTCGTTCAAACGATGATTCAGAGTTCGAACAAAGTGTTGAATCAAGACACCTCTCGAACGACGATACGGGAATCCTCCAGTCGGGAATTCAAGACTTGGAACTTGGAGGAGTTGTTGAAGAAGTCATTGGTACGACTACGGTGGAGGATTCAATTTTACCCATTCAGCAACTTACTTCGATTCTGGATGGTTTCCATCAGTATACCGGTGGGCAGTTATTGCTTCATCAACTTTAG

Protein sequence

MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSVSALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTVEDSILPIQQLTSILDGFHQYTGGQLLLHQL

Homology

[Close]

BLAST of IVF0020558 vs. ExPASy TrEMBL
Match: A0A5A7UAE5 (ALBINO3-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001390 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.7e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120
           SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV
Sbjct: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120

Query: 121 EDSILPIQQLTSILDGFHQYTG 143
           EDSILPIQQLTSILDGFHQYTG
Sbjct: 121 EDSILPIQQLTSILDGFHQYTG 142

[Close]

BLAST of IVF0020558 vs. ExPASy TrEMBL
Match: A0A1S3B4X9 (ALBINO3-like protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485819 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.7e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120
           SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV
Sbjct: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120

Query: 121 EDSILPIQQLTSILDGFHQYTG 143
           EDSILPIQQLTSILDGFHQYTG
Sbjct: 121 EDSILPIQQLTSILDGFHQYTG 142

[Close]

BLAST of IVF0020558 vs. ExPASy TrEMBL
Match: A0A0A0LJT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094350 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.5e-59
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSIS LS PLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISS+
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISSLSSPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSL 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQ----SVESRHLSNDDTGILQSGIQDLELGGVVEEVIG 120
           SA TAFSSR FWTRSNDDSEF++     VES HLSNDDT     GIQDLELGGVVEEVIG
Sbjct: 61  SAFTAFSSRSFWTRSNDDSEFDRIAHYGVESSHLSNDDT-----GIQDLELGGVVEEVIG 120

Query: 121 TTTVEDSILPIQQLTSILDGFHQYTG 143
            T VE+SILPIQQLTSILDGFHQYTG
Sbjct: 121 ATAVENSILPIQQLTSILDGFHQYTG 141

[Close]

BLAST of IVF0020558 vs. ExPASy TrEMBL
Match: A0A6J1F440 (ALBINO3-like protein 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439944 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 107/143 (74.83%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCT+LRRLRPSRFYS + LS P+  RLHEAHTL SSHH  FT P+HRFD HI+S+
Sbjct: 1   MATSKLCTNLRRLRPSRFYSCASLSYPIASRLHEAHTLPSSHHHSFTRPTHRFDHHITSI 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQ-SVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTT 120
            ALTAFSSR  WTRS+DDSEF++  + +  LS+DDTGI QSGIQDLELGGVVEEVI  T 
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRIDLFASRLSDDDTGI-QSGIQDLELGGVVEEVINATA 120

Query: 121 VEDSILPIQQLTSILDGFHQYTG 143
           VE+SILP QQLTSILDGFHQYTG
Sbjct: 121 VEESILPTQQLTSILDGFHQYTG 142

[Close]

BLAST of IVF0020558 vs. ExPASy TrEMBL
Match: A0A6J1EYX9 (ALBINO3-like protein 2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439944 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 107/143 (74.83%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCT+LRRLRPSRFYS + LS P+  RLHEAHTL SSHH  FT P+HRFD HI+S+
Sbjct: 1   MATSKLCTNLRRLRPSRFYSCASLSYPIASRLHEAHTLPSSHHHSFTRPTHRFDHHITSI 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQ-SVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTT 120
            ALTAFSSR  WTRS+DDSEF++  + +  LS+DDTGI QSGIQDLELGGVVEEVI  T 
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRIDLFASRLSDDDTGI-QSGIQDLELGGVVEEVINATA 120

Query: 121 VEDSILPIQQLTSILDGFHQYTG 143
           VE+SILP QQLTSILDGFHQYTG
Sbjct: 121 VEESILPTQQLTSILDGFHQYTG 142

[Close]

BLAST of IVF0020558 vs. NCBI nr
Match: KAA0051397.1 (ALBINO3-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 284 bits (726), Expect = 2.77e-96
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120
           SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV
Sbjct: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120

Query: 121 EDSILPIQQLTSILDGFHQYTG 142
           EDSILPIQQLTSILDGFHQYTG
Sbjct: 121 EDSILPIQQLTSILDGFHQYTG 142

[Close]

BLAST of IVF0020558 vs. NCBI nr
Match: XP_008441758.1 (PREDICTED: ALBINO3-like protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 284 bits (726), Expect = 1.55e-90
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120
           SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV
Sbjct: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120

Query: 121 EDSILPIQQLTSILDGFHQYTG 142
           EDSILPIQQLTSILDGFHQYTG
Sbjct: 121 EDSILPIQQLTSILDGFHQYTG 142

[Close]

BLAST of IVF0020558 vs. NCBI nr
Match: XP_004138896.1 (ALBINO3-like protein 2, chloroplastic [Cucumis sativus] >KAE8651737.1 hypothetical protein Csa_006628 [Cucumis sativus])

HSP 1 Score: 238 bits (606), Expect = 1.23e-72
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSIS LS PLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISS+
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISSLSSPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSL 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQ----SVESRHLSNDDTGILQSGIQDLELGGVVEEVIG 120
           SA TAFSSR FWTRSNDDSEF++     VES HLSNDDTGI     QDLELGGVVEEVIG
Sbjct: 61  SAFTAFSSRSFWTRSNDDSEFDRIAHYGVESSHLSNDDTGI-----QDLELGGVVEEVIG 120

Query: 121 TTTVEDSILPIQQLTSILDGFHQYTG 142
            T VE+SILPIQQLTSILDGFHQYTG
Sbjct: 121 ATAVENSILPIQQLTSILDGFHQYTG 141

[Close]

BLAST of IVF0020558 vs. NCBI nr
Match: XP_038890165.1 (ALBINO3-like protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 207 bits (528), Expect = 4.62e-61
Identity = 110/146 (75.34%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MA S+LCTHLRRLRPSRFYS + LS P+ FRLHEAHTL S HHQ F+ P+ RFDPH+ S 
Sbjct: 1   MAKSQLCTHLRRLRPSRFYSSASLSYPMAFRLHEAHTLPSPHHQSFSRPTRRFDPHLCST 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQ----SVESRHLSNDDTGILQSGIQDLELGGVVEEVIG 120
           +ALTAFSSR  WTRS+D+SEFEQ     VES  LSNDDTGI  SGIQDLELGGVVEEVIG
Sbjct: 61  AALTAFSSRSLWTRSDDESEFEQIGHFGVESSRLSNDDTGI-HSGIQDLELGGVVEEVIG 120

Query: 121 TTTVEDSILPIQQLTSILDGFHQYTG 142
              VE+SILPIQQLTSILDGFHQYTG
Sbjct: 121 AAVVEESILPIQQLTSILDGFHQYTG 145

[Close]

BLAST of IVF0020558 vs. NCBI nr
Match: KAG6598966.1 (ALBINO3-like protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202 bits (513), Expect = 7.75e-61
Identity = 107/143 (74.83%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCT+LRRLRPSRFYS + LS P+  RLHEAHTL SSHH  FT P+HRFD HI+S+
Sbjct: 1   MATSKLCTNLRRLRPSRFYSCASLSYPIASRLHEAHTLPSSHHHSFTRPTHRFDHHITSI 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQ-SVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTT 120
            ALTAFSSR  WTRS+DDSEF++  + +  LS+DDTGI QSGIQDLELGGVVEEVI  T 
Sbjct: 61  GALTAFSSRSLWTRSDDDSEFQRIDLFASRLSDDDTGI-QSGIQDLELGGVVEEVINATA 120

Query: 121 VEDSILPIQQLTSILDGFHQYTG 142
           VE+SILP QQLTSILDGFHQYTG
Sbjct: 121 VEESILPTQQLTSILDGFHQYTG 142

The following BLAST results are available for this feature:

BLAST of IVF0020558 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAE5	6.7e-73	100.00	ALBINO3-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]
A0A1S3B4X9	6.7e-73	100.00	ALBINO3-like protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485819 PE...	[more]
A0A0A0LJT6	5.5e-59	85.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094350 PE=3 SV=1	[more]
A0A6J1F440	3.4e-48	74.83	ALBINO3-like protein 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1EYX9	3.4e-48	74.83	ALBINO3-like protein 2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of IVF0020558 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051397.1	2.77e-96	100.00	ALBINO3-like protein 2 [Cucumis melo var. makuwa]	[more]
XP_008441758.1	1.55e-90	100.00	PREDICTED: ALBINO3-like protein 2, chloroplastic [Cucumis melo]	[more]
XP_004138896.1	1.23e-72	85.62	ALBINO3-like protein 2, chloroplastic [Cucumis sativus] >KAE8651737.1 hypothetic...	[more]
XP_038890165.1	4.62e-61	75.34	ALBINO3-like protein 2, chloroplastic [Benincasa hispida]	[more]
KAG6598966.1	7.75e-61	74.83	ALBINO3-like protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of IVF0020558 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020558.1	IVF0020558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090150	establishment of protein localization to membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0032977	membrane insertase activity