IVF0020333 (gene) Melon (IVF77) v1

Overview
NameIVF0020333
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr12: 11527876 .. 11528183 (-)
RNA-Seq ExpressionIVF0020333
SyntenyIVF0020333
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAAGAGAAGCTTACAGAAAGAGAAAGGCAGCGGAGAAAGCGAGGATAGGAAATCAAAAGGGAGACCCAAGTTGTTGAATGATGCGAATATTAGGGCAAAATATATAAATATATAAATATATATATAAAAAGGAAAGAGGAAGAAAAATGGCTTTTGGAGAAAGGTGAAAGCCCAGAAGAGGAAGAGGGAAGAGGGGGAATGAATGGAGAATATGCCATTTGCGAGCTTCGAAGAGGCGGACAGTGAAGTACCAGATCCAACTTCCTTACATCTTATACTTCTTCCTTTTTTTTGCTCTATAA

mRNA sequence

ATGGGGGAAGAGAAGCTTACAGAAAGAGAAAGGCAGCGGAGAAAAGGAAGAGGGAAGAGGGGGAATGAATGGAGAATATGCCATTTGCGAGCTTCGAAGAGGCGGACAGTGAAGTACCAGATCCAACTTCCTTACATCTTATACTTCTTCCTTTTTTTTGCTCTATAA

Coding sequence (CDS)

ATGGGGGAAGAGAAGCTTACAGAAAGAGAAAGGCAGCGGAGAAAAGGAAGAGGGAAGAGGGGGAATGAATGGAGAATATGCCATTTGCGAGCTTCGAAGAGGCGGACAGTGAAGTACCAGATCCAACTTCCTTACATCTTATACTTCTTCCTTTTTTTTGCTCTATAA

Protein sequence

MGEEKLTERERQRRKGRGKRGNEWRICHLRASKRRTVKYQIQLPYILYFFLFFAL
Homology
[Close]
BLAST of IVF0020333 vs. ExPASy TrEMBL
Match: A0A0A0LSN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G163150 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.0e-07
Identity = 35/50 (70.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 1  MGEEKLTERERQRRK------------GRGKRGNEWRICHLRASKRRTVK 39
          MGEEKLTERERQRRK            GRGKRG+EWRICHLR SKRR VK
Sbjct: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 50

[Close]
BLAST of IVF0020333 vs. NCBI nr
Match: KGN64930.1 (hypothetical protein Csa_022830 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 4.70e-11
Identity = 35/50 (70.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 1  MGEEKLTERERQRRK------------GRGKRGNEWRICHLRASKRRTVK 38
          MGEEKLTERERQRRK            GRGKRG+EWRICHLR SKRR VK
Sbjct: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 50

The following BLAST results are available for this feature:
BLAST of IVF0020333 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0020333 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSN79.0e-0770.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G163150 PE=4 SV=1[more]
BLAST of IVF0020333 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64930.14.70e-1170.00hypothetical protein Csa_022830 [Cucumis sativus][more]
BLAST of IVF0020333 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020333.1IVF0020333.1mRNA